Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007404.1

Orthogroup ID

OG0005425

Physical Location & Seq

Genomic Coordinates Reverse (-)

37624 .. 38121

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007404.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgtctcttataactgacgaggtgagagccaaggctgatgagttctaccaaggtgatgctatctgccaggagaagtcaaagttcttgctcacagagaagggtctccccaatgggcttctgcccatgaaggacatggtggaatgtggctacatcaaagagactggctttgtttggctcaagcagaagaagagcaccacccacaagtttgagaaggttgggaggctggcgagctatgcaactgagatcacagccactgttgtgaaaggcaagatcagtaagctgactggagtcaagaccaaggagctcttggtctgggtgtcactcagtgacatctatttggatgaccccccaactggaaagatcaccttcaagtctcctacagggctattcaggacatttcctgcctcggctttcgagcttgatggacctgatggtggcaaggcaatggaggtcaatgaggaggaggtcaaggacgtccccggagctgtggaggtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

165

Amino Acids

18.18

Weight (kDa)

5.58

Isoelectric Point (pI)

28.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09310 AT1G56580
fragaria_vesca	FvH4_5g26660 FvH4_6g07820 FvH4_6g07830
malus_domestica	MD04G1191700.v1.1 MD13G1256800.v1.1
prunus_persica	Prupe.6G310300_v2.0.a1
pyrus_communis	pycom04g16930 pycom12g19090
rosa_chinensis	RchiOBHm_Chr3g0457531
rosa_laevigata	RLG00000025213 RLG00000025215
rosa_multiflora	Rmu_sc0007404.1_g000007 Rmu_sc0007404.1_g000011
rosa_roxburghii	Rroxscaffold_6G00421760 Rroxscaffold_6G00421790
rosa_rugosa	Rorug03G0020800 Rorug03G0021100
rosa_samantha	Rh3AG081500 Rh3AG081700 Rh3BG083700 Rh3BG083900 Rh3CG083900 Rh3CG084100 Rh3DG085300 Rh3DG085400
rosa_wichuraiana	Rw3G007000 Rw3G007010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
AatII	GACGTC	1 cut(s)	477
AcyI	GRCGYC	1 cut(s)	474
AdeI	CACNNNGTG	1 cut(s)	326
AfiI	CCNNNNNNNGG	2 cut(s)	353, 434
AgsI	TTSAA	1 cut(s)	370
AjnI	CCWGG	1 cut(s)	66
AleI	CACNNNNGTG	1 cut(s)	257
AluBI	AGCT	5 cut(s)	231, 280, 304, 418, 485
AluI	AGCT	5 cut(s)	231, 280, 304, 418, 485
Alw21I	GWGCWC	2 cut(s)	194, 306
Alw26I	GTCTC	4 cut(s)	9, 107, 152, 378
AlwNI	CAGNNNCTG	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	425
AsuC2I	CCSGG	1 cut(s)	480
AsuHPI	GGTGA	3 cut(s)	34, 65, 355
AvaII	GGWCC	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	306
Bbv12I	GWGCWC	2 cut(s)	194, 306
BccI	CCATC	2 cut(s)	416, 425
BciT130I	CCWGG	1 cut(s)	68
BcnI	CCSGG	1 cut(s)	480
BcoDI	GTCTC	4 cut(s)	9, 107, 152, 378
BfaI	CTAG	1 cut(s)	496
BfmI	CTRYAG	1 cut(s)	378
Bme1390I	CCNGG	2 cut(s)	68, 480
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	425
BmrFI	CCNGG	2 cut(s)	68, 480
BmsI	GCATC	1 cut(s)	46
BoxI	GACNNNNGTC	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	5 cut(s)	30, 49, 297, 405, 478
Bsc4I	CCNNNNNNNGG	2 cut(s)	353, 434
Bse1I	ACTGG	3 cut(s)	166, 289, 358
Bse3DI	GCAATG	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	5 cut(s)	30, 49, 297, 405, 478
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	2 cut(s)	353, 434
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	2 cut(s)	231, 337
BseNI	ACTGG	3 cut(s)	166, 289, 358
BseRI	GAGGAG	2 cut(s)	473, 476
BsiHKAI	GWGCWC	2 cut(s)	194, 306
BsiSI	CCGG	1 cut(s)	480
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	2 cut(s)	353, 434
BsmAI	GTCTC	4 cut(s)	9, 107, 152, 378
BsmFI	GGGAC	1 cut(s)	461
Bso31I	GGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	194, 306
Bsp143I	GATC	3 cut(s)	243, 270, 360
BspCNI	CTCAG	2 cut(s)	232, 336
BspQI	GCTCTTC	1 cut(s)	182
BspTNI	GGTCTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	450
BsrI	ACTGG	3 cut(s)	166, 289, 358
BssECI	CCNNGG	5 cut(s)	30, 49, 297, 405, 478
BssMI	GATC	3 cut(s)	243, 270, 360
BssNI	GRCGYC	1 cut(s)	474
BssT1I	CCWWGG	3 cut(s)	30, 49, 297
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	1 cut(s)	182
BstACI	GRCGYC	1 cut(s)	474
BstC8I	GCNNGC	2 cut(s)	225, 229
BstDEI	CTNAG	2 cut(s)	240, 323
BstF5I	GGATG	1 cut(s)	346
BstKTI	GATC	3 cut(s)	246, 273, 363
BstMAI	GTCTC	4 cut(s)	9, 107, 152, 378
BstMBI	GATC	3 cut(s)	243, 270, 360
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	1 cut(s)	68
BstPAI	GACNNNNGTC	1 cut(s)	287
BstSCI	CCNGG	2 cut(s)	66, 478
BstSFI	CTRYAG	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	346
BtsIMutI	CAGTG	2 cut(s)	252, 331
Cac8I	GCNNGC	2 cut(s)	225, 229
CaiI	CAGNNNCTG	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	425
CviAII	CATG	2 cut(s)	124, 133
DdeI	CTNAG	2 cut(s)	240, 323
DpnI	GATC	3 cut(s)	245, 272, 362
DpnII	GATC	3 cut(s)	243, 270, 360
DraIII	CACNNNGTG	1 cut(s)	326
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	3 cut(s)	30, 49, 297
Eco24I	GRGCYC	1 cut(s)	306
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	425
Eco53kI	GAGCTC	1 cut(s)	304
EcoICRI	GAGCTC	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	66
EcoT14I	CCWWGG	3 cut(s)	30, 49, 297
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	3 cut(s)	30, 49, 297
FaeI	CATG	2 cut(s)	127, 136
FaiI	YATR	4 cut(s)	11, 125, 134, 234
FalI	AAGNNNNNCTT	4 cut(s)	290, 322, 350, 382
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	2 cut(s)	123, 132
FokI	GGATG	1 cut(s)	353
FriOI	GRGCYC	1 cut(s)	306
FspBI	CTAG	1 cut(s)	496
GsuI	CTGGAG	1 cut(s)	306
HapII	CCGG	1 cut(s)	480
Hin1I	GRCGYC	1 cut(s)	474
Hin1II	CATG	2 cut(s)	127, 136
HinfI	GANTC	1 cut(s)	288
HpaII	CCGG	1 cut(s)	480
HphI	GGTGA	3 cut(s)	34, 65, 355
Hpy188III	TCNNGA	2 cut(s)	292, 391
HpyAV	CCTTC	4 cut(s)	91, 121, 205, 376
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	2 cut(s)	240, 323
HpySE526I	ACGT	1 cut(s)	474
Hsp92I	GRCGYC	1 cut(s)	474
Hsp92II	CATG	2 cut(s)	127, 136
Kzo9I	GATC	3 cut(s)	243, 270, 360
LguI	GCTCTTC	1 cut(s)	182
LmnI	GCTCC	2 cut(s)	301, 482
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	496
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	2 cut(s)	318, 326
MalI	GATC	3 cut(s)	245, 272, 362
MboI	GATC	3 cut(s)	243, 270, 360
MboII	GAAGA	2 cut(s)	196, 199
MhlI	GDGCHC	2 cut(s)	194, 306
MlyI	GAGTC	1 cut(s)	297
MnlI	CCTC	8 cut(s)	13, 213, 415, 442, 451, 454, 457, 484
MslI	CAYNNNNRTG	1 cut(s)	257
MspI	CCGG	1 cut(s)	480
MspR9I	CCNGG	2 cut(s)	68, 480
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	233
NciI	CCSGG	1 cut(s)	480
NdeII	GATC	3 cut(s)	243, 270, 360
NlaIII	CATG	2 cut(s)	127, 136
NmeAIII	GCCGAG	1 cut(s)	386
NmuCI	GTSAC	2 cut(s)	318, 326
OliI	CACNNNNGTG	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	182
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
PshAI	GACNNNNGTC	1 cut(s)	287
PsiI	TTATAA	1 cut(s)	11
Psp124BI	GAGCTC	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	425
PstNI	CAGNNNCTG	1 cut(s)	254
RseI	CAYNNNNRTG	1 cut(s)	257
SacI	GAGCTC	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	182
Sau3AI	GATC	3 cut(s)	243, 270, 360
Sau96I	GGNCC	1 cut(s)	425
SchI	GAGTC	1 cut(s)	297
ScrFI	CCNGG	2 cut(s)	68, 480
SduI	GDGCHC	2 cut(s)	194, 306
SfaNI	GCATC	1 cut(s)	46
SfcI	CTRYAG	1 cut(s)	378
SinI	GGWCC	1 cut(s)	425
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SspMI	CTAG	1 cut(s)	496
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	2 cut(s)	66, 478
StyI	CCWWGG	3 cut(s)	30, 49, 297
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	1 cut(s)	414
TscAI	CASTG	2 cut(s)	259, 331
TseFI	GTSAC	2 cut(s)	318, 326
Tsp45I	GTSAC	2 cut(s)	318, 326
TspDTI	ATGAA	1 cut(s)	140
TspRI	CASTG	2 cut(s)	259, 331
VpaK11BI	GGWCC	1 cut(s)	425
XcmI	CCANNNNNNNNNTGG	2 cut(s)	130, 304
XspI	CTAG	1 cut(s)	496
ZraI	GACGTC	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.