AT1G09320

agenet domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
3009890 .. 3012407
2518 bp
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UTR
Exon/CDS
Intron
AT1G09320.1

Sequence Viewer

Length: 1554 bp
ATGTTGCGGCCTCGCCGATCTCTTGGGGTTTCATCTCCGGCGAAGCAGAGGAAGAAAGCTGCTCCTAAGAATTCCATGGCTACGAGAGCGAATCGAAAGCGTCTCCCTTCTTACCTCAAACCTGGCTCCGCCGTAGAAATCAGCTCCGACGAGATTGGATTCCGCGGCTCGTGGTACATGGGAAAAGTAATCACCATCCCATCTTCCTCAGATAAGGATTCCGTTAAATGCCAAGTCGAGTATACGACGCTCTTCTTCGATAAAGAGGGGACGAAGCCACTGAAGGAAGTTGTCGACATGAGTCAGCTTCGTCCTCCGGCCCCGCCAATGTCTGAGATAGAGAAGAAGAAGAAGATCGTGGTTGGGGAAGAGGTCGACGCGTTTTACAATGACGGTTGGTGGGAAGGGGATGTGACTGAGGTTCTGGATGATGGGAAATTCAGTGTTTTCTTTAGGAGCTCTAAGGAACAGATTCGGTTTAGGAAAGATGAGTTACGGTTTCATAGGGAATGGGTTGATGGAGCTTGGAAGCCTCCATTAGAGGAAACAGAAGAAGAGGAAGATGAATCAGAGGAAGACAAATTAGACGACTCAGAAGACGAGGAGGATATTTTAGCCCGAGTGGATCTAGAAACTACCAGAGCAATCGCGAAACAAATGTTTTCCAGTGGCACTGTTGTCGAGGTTAGCAGCGATGAGGAAGGTTTCCAGGGGTGTTGGTTTGCAGCTAAAGTTGTTGAACCCGTTGGCGAAGACAAATTTCTTGTTGAGTACCGAGACTTGAGAGAAAAAGATGGTATAGAGCCTTTGAAAGAAGAAACCGATTTTCTGCACATAAGGCCGCCACCACCAAGGGATGAGGATATTGATTTTGCTGTTGGTGACAAGATTAATGCATTTTACAATGACGGCTGGTGGGTAGGTGTTGTCATAGATGGTATGAAGCATGGAACGGTTGGTATATATTTTAGGCAATCACAAGAGAAGATGCGGTTTGGAAGGCAGGGGCTTCGTCTGCATAAAGATTGGGTTGACGGGACCTGGCAGCTACCACTGAAAGGAGGGAAGATAAAGAGGGAAAAGACTGTTTCATGTAACCGGAACGTGAGACCCAAGAAAGCAACTGAGAAGCAAGCGTTCAGCATTGGAACTCCGATCGAGGTTAGCCCTGAGGAAGAAGGATTTGAAGATTCTTGGTTTCTTGCAAAACTTATTGAATACAGAGGAAAGGACAAATGCCTTGTAGAATATGATAATCTGAAAGCTGAAGATGGGAAAGAGCCTTTGAGAGAAGAGGTTAATGTTTCACGGATAAGGCCTCTGCCACTAGAGAGTGTCATGGTTAGTCCATTTGAGAGGCATGACAAAGTTAATGCTTTGTATAATGATGGATGGTGGGTTGGGGTGATTAGAAAGGTTCTTGCAAAGTCATCTTACCTGGTTCTCTTTAAAAATACTCAAGAGCTGCTAAAATTTCATCACTCTCAACTAAGGCTACATCAGGAATGGATTGATGGAAAGTGGATAACATCTTTTAAGTCTCAGAAGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

517

Amino Acids

59.71

Weight (kDa)

5.56

Isoelectric Point (pI)

52.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 42 - 108 3e-17 Agenet domain
Agenet PF05641 224 - 284 1.6e-20 Agenet domain
Agenet PF05641 383 - 442 5.3e-18 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 242, 294, 375
AccII CGCG 3 cut(s) 165, 380, 650
AciI CCGC 7 cut(s) 7, 129, 163, 165, 323, 842, 991
AclWI GGATC 1 cut(s) 633
AcsI RAATTY 4 cut(s) 70, 437, 758, 1472
AcuI CTGAAG 2 cut(s) 302, 1287
AfaI GTAC 2 cut(s) 176, 773
AfiI CCNNNNNNNGG 1 cut(s) 1058
AflIII ACRYGT 1 cut(s) 378
AgsI TTSAA 4 cut(s) 740, 811, 1187, 1217
AjnI CCWGG 4 cut(s) 121, 708, 1040, 1437
AluBI AGCT 9 cut(s) 59, 144, 307, 459, 524, 728, 1048, 1265, 1465
AluI AGCT 9 cut(s) 59, 144, 307, 459, 524, 728, 1048, 1265, 1465
Alw21I GWGCWC 1 cut(s) 461
Alw26I GTCTC 4 cut(s) 107, 771, 1102, 1545
AlwI GGATC 1 cut(s) 633
Ama87I CYCGRG 1 cut(s) 618
AoxI GGCC 4 cut(s) 8, 318, 839, 1316
ApeKI GCWGC 5 cut(s) 59, 690, 725, 1045, 1465
ApoI RAATTY 4 cut(s) 70, 437, 758, 1472
AseI ATTAAT 1 cut(s) 891
Asp700I GAANNNNTTC 1 cut(s) 471
AspS9I GGNCC 2 cut(s) 319, 1038
AsuHPI GGTGA 3 cut(s) 184, 893, 1417
AvaI CYCGRG 1 cut(s) 618
AvaII GGWCC 1 cut(s) 1038
AxyI CCTNAGG 1 cut(s) 1170
BanII GRGCYC 1 cut(s) 461
BauI CACGAG 1 cut(s) 169
BbsI GAAGAC 3 cut(s) 582, 603, 759
Bbv12I GWGCWC 1 cut(s) 461
BbvI GCAGC 5 cut(s) 46, 702, 737, 1057, 1452
BceAI ACGGC 2 cut(s) 116, 925
BcgI CGANNNNNNTGC 4 cut(s) 661, 695, 992, 1026
BciT130I CCWGG 4 cut(s) 123, 710, 1042, 1439
BcoDI GTCTC 4 cut(s) 107, 771, 1102, 1545
BfaI CTAG 2 cut(s) 629, 1328
BisI GCNGC 8 cut(s) 8, 60, 166, 691, 726, 842, 1046, 1466
BlsI GCNGC 8 cut(s) 9, 61, 167, 692, 727, 843, 1047, 1467
Bme1390I CCNGG 4 cut(s) 123, 710, 1042, 1439
Bme18I GGWCC 1 cut(s) 1038
BmeT110I CYCGRG 1 cut(s) 618
BmgT120I GGNCC 2 cut(s) 319, 1038
BmiI GGNNCC 3 cut(s) 127, 321, 1039
BmrFI CCNGG 4 cut(s) 123, 710, 1042, 1439
BmsI GCATC 1 cut(s) 978
BoxI GACNNNNGTC 1 cut(s) 300
BpiI GAAGAC 3 cut(s) 582, 603, 759
BpuEI CTTGAG 2 cut(s) 802, 1443
BsaI GGTCTC 1 cut(s) 1102
BsaJI CCNNGG 4 cut(s) 75, 163, 709, 851
BsaWI WCCGGW 1 cut(s) 1098
Bsc4I CCNNNNNNNGG 1 cut(s) 1058
Bse1I ACTGG 1 cut(s) 666
Bse21I CCTNAGG 1 cut(s) 1170
BseBI CCWGG 4 cut(s) 123, 710, 1042, 1439
BseDI CCNNGG 4 cut(s) 75, 163, 709, 851
BseGI GGATG 5 cut(s) 195, 415, 433, 862, 1397
BseLI CCNNNNNNNGG 1 cut(s) 1058
BseMII CTCAG 6 cut(s) 222, 324, 408, 606, 1116, 1161
BseNI ACTGG 1 cut(s) 666
BseRI GAGGAG 1 cut(s) 617
BseXI GCAGC 5 cut(s) 46, 702, 737, 1057, 1452
BsgI GTGCAG 1 cut(s) 815
Bsh1236I CGCG 3 cut(s) 165, 380, 650
Bsh1285I CGRYCG 1 cut(s) 1158
BshFI GGCC 4 cut(s) 10, 320, 841, 1318
BsiEI CGRYCG 1 cut(s) 1158
BsiHKAI GWGCWC 1 cut(s) 461
BsiHKCI CYCGRG 1 cut(s) 618
BsiSI CCGG 3 cut(s) 38, 317, 1099
BslFI GGGAC 2 cut(s) 283, 1051
BslI CCNNNNNNNGG 1 cut(s) 1058
BsmAI GTCTC 4 cut(s) 107, 771, 1102, 1545
BsmBI CGTCTC 1 cut(s) 107
BsmFI GGGAC 2 cut(s) 283, 1051
BsnI GGCC 4 cut(s) 10, 320, 841, 1318
Bso31I GGTCTC 1 cut(s) 1102
BsoBI CYCGRG 1 cut(s) 618
Bsp1286I GDGCHC 1 cut(s) 461
Bsp143I GATC 4 cut(s) 17, 354, 625, 1155
Bsp19I CCATGG 1 cut(s) 75
Bsp68I TCGCGA 1 cut(s) 650
BspACI CCGC 7 cut(s) 7, 129, 163, 165, 323, 842, 991
BspANI GGCC 4 cut(s) 10, 320, 841, 1318
BspCNI CTCAG 6 cut(s) 221, 325, 409, 605, 1117, 1162
BspFNI CGCG 3 cut(s) 165, 380, 650
BspLI GGNNCC 3 cut(s) 127, 321, 1039
BspPI GGATC 1 cut(s) 633
BspQI GCTCTTC 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 1102
BsrI ACTGG 1 cut(s) 666
BssECI CCNNGG 4 cut(s) 75, 163, 709, 851
BssMI GATC 4 cut(s) 17, 354, 625, 1155
BssNAI GTATAC 1 cut(s) 243
BssSI CACGAG 1 cut(s) 169
BssT1I CCWWGG 2 cut(s) 75, 851
Bst1107I GTATAC 1 cut(s) 243
Bst2BI CACGAG 1 cut(s) 169
Bst2UI CCWGG 4 cut(s) 123, 710, 1042, 1439
Bst4CI ACNGT 5 cut(s) 395, 498, 676, 955, 1087
Bst6I CTCTTC 4 cut(s) 257, 363, 549, 1287
BstC8I GCNNGC 1 cut(s) 1134
BstDSI CCRYGG 2 cut(s) 75, 163
BstF5I GGATG 5 cut(s) 195, 415, 433, 862, 1397
BstFNI CGCG 3 cut(s) 165, 380, 650
BstKTI GATC 4 cut(s) 20, 357, 628, 1158
BstMAI GTCTC 4 cut(s) 107, 771, 1102, 1545
BstMBI GATC 4 cut(s) 17, 354, 625, 1155
BstMCI CGRYCG 1 cut(s) 1158
BstMWI GCNNNNNNNGC 3 cut(s) 86, 838, 1015
BstNI CCWGG 4 cut(s) 123, 710, 1042, 1439
BstPAI GACNNNNGTC 1 cut(s) 300
BstSCI CCNGG 4 cut(s) 121, 708, 1040, 1437
BstUI CGCG 3 cut(s) 165, 380, 650
BstV1I GCAGC 5 cut(s) 46, 702, 737, 1057, 1452
BstV2I GAAGAC 3 cut(s) 582, 603, 759
BstX2I RGATCY 1 cut(s) 625
BstYI RGATCY 1 cut(s) 625
BstZ17I GTATAC 1 cut(s) 243
Bsu36I CCTNAGG 1 cut(s) 1170
BsuRI GGCC 4 cut(s) 10, 320, 841, 1318
BtgI CCRYGG 2 cut(s) 75, 163
BtgZI GCGATG 1 cut(s) 708
BtsCI GGATG 5 cut(s) 195, 415, 433, 862, 1397
BtsIMutI CAGTG 5 cut(s) 278, 448, 672, 673, 1052
BtuMI TCGCGA 1 cut(s) 650
Cac8I GCNNGC 1 cut(s) 1134
Cfr13I GGNCC 2 cut(s) 319, 1038
Cfr42I CCGCGG 1 cut(s) 166
CseI GACGC 3 cut(s) 89, 256, 386
CsiI ACCWGGT 1 cut(s) 1437
Csp6I GTAC 2 cut(s) 175, 772
CviAII CATG 7 cut(s) 76, 178, 298, 947, 1092, 1339, 1361
CviQI GTAC 2 cut(s) 175, 772
DpnI GATC 4 cut(s) 19, 356, 627, 1157
DpnII GATC 4 cut(s) 17, 354, 625, 1155
DraI TTTAAA 1 cut(s) 1450
Eam1104I CTCTTC 4 cut(s) 257, 363, 549, 1287
EarI CTCTTC 4 cut(s) 257, 363, 549, 1287
EciI GGCGGA 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 459
Eco130I CCWWGG 2 cut(s) 75, 851
Eco147I AGGCCT 1 cut(s) 1318
Eco24I GRGCYC 1 cut(s) 461
Eco31I GGTCTC 1 cut(s) 1102
Eco47I GGWCC 1 cut(s) 1038
Eco53kI GAGCTC 1 cut(s) 459
Eco57I CTGAAG 2 cut(s) 302, 1287
Eco81I CCTNAGG 1 cut(s) 1170
Eco88I CYCGRG 1 cut(s) 618
EcoICRI GAGCTC 1 cut(s) 459
EcoO109I RGGNCCY 1 cut(s) 1038
EcoRI GAATTC 1 cut(s) 70
EcoRII CCWGG 4 cut(s) 121, 708, 1040, 1437
EcoT14I CCWWGG 2 cut(s) 75, 851
EcoT22I ATGCAT 1 cut(s) 898
EcoT38I GRGCYC 1 cut(s) 461
ErhI CCWWGG 2 cut(s) 75, 851
Esp3I CGTCTC 1 cut(s) 107
FaeI CATG 7 cut(s) 79, 181, 301, 950, 1095, 1342, 1364
FaqI GGGAC 2 cut(s) 283, 1051
FatI CATG 7 cut(s) 75, 177, 297, 946, 1091, 1338, 1360
FauI CCCGC 1 cut(s) 330
FblI GTMKAC 3 cut(s) 242, 294, 375
Fnu4HI GCNGC 8 cut(s) 8, 60, 166, 691, 726, 842, 1046, 1466
FokI GGATG 5 cut(s) 182, 422, 440, 869, 1404
FriOI GRGCYC 1 cut(s) 461
Fsp4HI GCNGC 8 cut(s) 8, 60, 166, 691, 726, 842, 1046, 1466
FspBI CTAG 2 cut(s) 629, 1328
GluI GCNGC 8 cut(s) 8, 60, 166, 691, 726, 842, 1046, 1466
HaeIII GGCC 4 cut(s) 10, 320, 841, 1318
HapII CCGG 3 cut(s) 38, 317, 1099
HgaI GACGC 3 cut(s) 89, 256, 386
Hin1II CATG 7 cut(s) 79, 181, 301, 950, 1095, 1342, 1364
HincII GTYRAC 3 cut(s) 295, 376, 1033
HindII GTYRAC 3 cut(s) 295, 376, 1033
HinfI GANTC 8 cut(s) 91, 159, 218, 301, 472, 566, 590, 1190
HpaII CCGG 3 cut(s) 38, 317, 1099
HphI GGTGA 3 cut(s) 184, 893, 1417
Hpy166II GTNNAC 4 cut(s) 243, 295, 376, 1033
Hpy188I TCNGA 8 cut(s) 148, 211, 334, 571, 595, 1155, 1260, 1545
Hpy188III TCNNGA 5 cut(s) 425, 629, 649, 1460, 1502
Hpy8I GTNNAC 4 cut(s) 243, 295, 376, 1033
Hpy99I CGWCG 3 cut(s) 152, 250, 380
HpyAV CCTTC 7 cut(s) 117, 277, 398, 695, 993, 1172, 1540
HpyCH4III ACNGT 5 cut(s) 395, 498, 676, 955, 1087
HpyCH4IV ACGT 1 cut(s) 1104
HpyCH4V TGCA 6 cut(s) 725, 832, 896, 1018, 1205, 1424
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 838, 1015
HpySE526I ACGT 1 cut(s) 1104
Hsp92II CATG 7 cut(s) 79, 181, 301, 950, 1095, 1342, 1364
KspI CCGCGG 1 cut(s) 166
Kzo9I GATC 4 cut(s) 17, 354, 625, 1155
LguI GCTCTTC 1 cut(s) 257
LmnI GCTCC 5 cut(s) 67, 131, 149, 456, 521
Lsp1109I GCAGC 5 cut(s) 46, 702, 737, 1057, 1452
LweI GCATC 1 cut(s) 978
MabI ACCWGGT 1 cut(s) 1437
MaeI CTAG 2 cut(s) 629, 1328
MaeII ACGT 1 cut(s) 1104
MaeIII GTNAC 4 cut(s) 412, 492, 881, 1094
MalI GATC 4 cut(s) 19, 356, 627, 1157
MboI GATC 4 cut(s) 17, 354, 625, 1155
MflI RGATCY 1 cut(s) 625
MhlI GDGCHC 1 cut(s) 461
MluCI AATT 5 cut(s) 70, 437, 581, 758, 1472
MluI ACGCGT 1 cut(s) 378
MlyI GAGTC 2 cut(s) 310, 584
MmeI TCCRAC 1 cut(s) 171
Mph1103I ATGCAT 1 cut(s) 898
MroXI GAANNNNTTC 1 cut(s) 471
MseI TTAA 6 cut(s) 225, 891, 1299, 1371, 1449, 1536
MspA1I CMGCKG 1 cut(s) 165
MspI CCGG 3 cut(s) 38, 317, 1099
MspR9I CCNGG 4 cut(s) 123, 710, 1042, 1439
MvaI CCWGG 4 cut(s) 123, 710, 1042, 1439
MvnI CGCG 3 cut(s) 165, 380, 650
MwoI GCNNNNNNNGC 3 cut(s) 86, 838, 1015
NcoI CCATGG 1 cut(s) 75
NdeII GATC 4 cut(s) 17, 354, 625, 1155
NlaIII CATG 7 cut(s) 79, 181, 301, 950, 1095, 1342, 1364
NlaIV GGNNCC 3 cut(s) 127, 321, 1039
NmuCI GTSAC 2 cut(s) 412, 881
NruI TCGCGA 1 cut(s) 650
NsiI ATGCAT 1 cut(s) 898
PceI AGGCCT 1 cut(s) 1318
PciSI GCTCTTC 1 cut(s) 257
PdmI GAANNNNTTC 1 cut(s) 471
PfeI GAWTC 6 cut(s) 91, 159, 218, 472, 566, 1190
PkrI GCNGC 8 cut(s) 9, 61, 167, 692, 727, 843, 1047, 1467
Ple19I CGATCG 1 cut(s) 1158
PleI GAGTC 2 cut(s) 309, 584
PpsI GAGTC 2 cut(s) 309, 584
PpuMI RGGWCCY 1 cut(s) 1038
PshAI GACNNNNGTC 1 cut(s) 300
PshBI ATTAAT 1 cut(s) 891
Psp124BI GAGCTC 1 cut(s) 461
Psp5II RGGWCCY 1 cut(s) 1038
Psp6I CCWGG 4 cut(s) 121, 708, 1040, 1437
PspGI CCWGG 4 cut(s) 121, 708, 1040, 1437
PspN4I GGNNCC 3 cut(s) 127, 321, 1039
PspPI GGNCC 2 cut(s) 319, 1038
PspPPI RGGWCCY 1 cut(s) 1038
PsuI RGATCY 1 cut(s) 625
PvuI CGATCG 1 cut(s) 1158
RruI TCGCGA 1 cut(s) 650
RsaI GTAC 2 cut(s) 176, 773
RsaNI GTAC 2 cut(s) 175, 772
SacI GAGCTC 1 cut(s) 461
SacII CCGCGG 1 cut(s) 166
SalI GTCGAC 2 cut(s) 293, 374
SapI GCTCTTC 1 cut(s) 257
SaqAI TTAA 6 cut(s) 225, 891, 1299, 1371, 1449, 1536
SatI GCNGC 8 cut(s) 8, 60, 166, 691, 726, 842, 1046, 1466
Sau3AI GATC 4 cut(s) 17, 354, 625, 1155
Sau96I GGNCC 2 cut(s) 319, 1038
SchI GAGTC 2 cut(s) 310, 584
ScrFI CCNGG 4 cut(s) 123, 710, 1042, 1439
SduI GDGCHC 1 cut(s) 461
SexAI ACCWGGT 1 cut(s) 1437
SfaNI GCATC 1 cut(s) 978
Sfr303I CCGCGG 1 cut(s) 166
SgrBI CCGCGG 1 cut(s) 166
SinI GGWCC 1 cut(s) 1038
SmlI CTYRAG 2 cut(s) 781, 1458
SmoI CTYRAG 2 cut(s) 781, 1458
Sse9I AATT 5 cut(s) 70, 437, 581, 758, 1472
SseBI AGGCCT 1 cut(s) 1318
SsiI CCGC 7 cut(s) 7, 129, 163, 165, 323, 842, 991
SspMI CTAG 2 cut(s) 629, 1328
SstI GAGCTC 1 cut(s) 461
StuI AGGCCT 1 cut(s) 1318
StyD4I CCNGG 4 cut(s) 121, 708, 1040, 1437
StyI CCWWGG 2 cut(s) 75, 851
TaaI ACNGT 5 cut(s) 395, 498, 676, 955, 1087
TaiI ACGT 1 cut(s) 1107
TaqI TCGA 7 cut(s) 94, 237, 258, 294, 375, 681, 1158
TasI AATT 5 cut(s) 70, 437, 581, 758, 1472
TauI GCSGC 3 cut(s) 10, 168, 844
TfiI GAWTC 6 cut(s) 91, 159, 218, 472, 566, 1190
Tru1I TTAA 6 cut(s) 225, 891, 1299, 1371, 1449, 1536
Tru9I TTAA 6 cut(s) 225, 891, 1299, 1371, 1449, 1536
TscAI CASTG 5 cut(s) 285, 448, 673, 679, 1059
TseFI GTSAC 2 cut(s) 412, 881
TseI GCWGC 5 cut(s) 59, 690, 725, 1045, 1465
Tsp45I GTSAC 2 cut(s) 412, 881
TspDTI ATGAA 6 cut(s) 21, 491, 579, 956, 1080, 1466
TspGWI ACGGA 2 cut(s) 211, 1324
TspRI CASTG 5 cut(s) 285, 448, 673, 679, 1059
VpaK11BI GGWCC 1 cut(s) 1038
VspI ATTAAT 1 cut(s) 891
XapI RAATTY 4 cut(s) 70, 437, 758, 1472
XbaI TCTAGA 1 cut(s) 628
XmiI GTMKAC 3 cut(s) 242, 294, 375
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 2 cut(s) 629, 1328
Zsp2I ATGCAT 1 cut(s) 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.