Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007598

Physical Location & Seq

Genomic Coordinates Forward (+)

36195109 .. 36197212

Gene Structure 2104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1304600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCGGACGCCACCCACTTCGAGGTAGGCGACGAGGTGGAGGTCACCTCCCCAATCCACAACATGCGCGGCACCACATTCCCGGCGAAAATCGTCGCCAAGTCCAGAACGAAATCGAAATTCAAAGTCGAGTACAACAGAGTGAAGGCCCGGATCGATCGCAAGATCAGCGGCGGCCACAAGGGCGGCAAGGCGGCGCTGAGGGAAGAGGTCGACGCGGCTCTCCTCCGGCCTCCTCCGCCGCGACAGAGCGACTACCGGTTCAAATTGGGCGACGTGGTGGACGCCTTCTTTTGCGGCGGGTGGTGGGAGGGCGTCGTGGTCAGTGATGTTTTGGTGGACAACACGCTTGGGGTTTACTTCCGGTTCGCCAAGGAGAAGTTTGAGTTCGAGCCCGAGGAGCTGCGGCTTCACCGAGAGTGGGTAAAGGGGTCCTGGGTCCCACCTCTTCAACAAGGAGATGTCTTAGATGCCAAAGAACCAAAGACTGGGATGAATGAGGAATTGATAGAAGGAACAACGGTTGAGGTTTGCACTGATGAAGACGGATTTCAAGGCGCTTGGTTTGCTGCAAATATTGTCAAGGTAATGGAAAAGGACAAGTTTTTCATTCGATACAAGACAATAAAGACAGATGATAACAAGGAGTTGTTGACGGAAGAGGTCGATGCAAAGCACATAAGGCCTCGTCCTCCAAAAGTGGTTGCGGCTGAAAGTTTCAGTCTGACGGAAGACGTTGATGCTTTCTATAATGATGGCTGGTGGGAAGGTGTGATTCGCAAGGTCCTTCCCGGGCGAAGGTACAAAGTTTACTTCAAAGGTACAGATGATGAACTGATGTTTCAGCACTCTGATTTGAGGCCACGCCAAGATTGGATGGATAGAACATGGGTTATGGCTTCTCAGGCATTGAAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet

Protein Analysis

307

Amino Acids

35.23

Weight (kDa)

6.05

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	10 - 81	1.5e-07	Agenet domain
Agenet	PF05641	172 - 232	2.6e-21	Agenet domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09320
fragaria_vesca	FvH4_7g33450 FvH4_7g33450
malus_domestica	MD01G1232500.v1.1 MD07G1304600.v1.1 MD07G1304800.v1.1
prunus_persica	Prupe.2G323100_v2.0.a1
pyrus_communis	pycom01g24100 pycom07g27740 pycom07g27770
rosa_chinensis	RchiOBHm_Chr1g0383531
rosa_laevigata	RLG00000009721 RLG00000026102
rosa_multiflora	Rmu_sc0000255.1_g000047 Rmu_sc0012471.1_g000016
rosa_roxburghii	Rroxscaffold_4G00277300
rosa_rugosa	Rorug01G0441700 Rorug01G0441800
rosa_samantha	Rh1AG467300 Rh1BG424900 Rh1CG437600 Rh1DG457700 Rh7BG260300
rosa_wichuraiana	Rw1G040510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	3 cut(s)	69, 218, 244
AclWI	GGATC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	119
AcyI	GRCGYC	3 cut(s)	9, 285, 315
AfaI	GTAC	3 cut(s)	134, 803, 823
AfiI	CCNNNNNNNGG	4 cut(s)	22, 421, 488, 798
AgeI	ACCGGT	1 cut(s)	258
AgsI	TTSAA	6 cut(s)	124, 265, 452, 554, 817, 913
AjiI	CACGTC	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	434
AluBI	AGCT	1 cut(s)	403
AluI	AGCT	1 cut(s)	403
AlwI	GGATC	1 cut(s)	161
Ama87I	CYCGRG	2 cut(s)	395, 791
AoxI	GGCC	5 cut(s)	147, 175, 230, 683, 860
ApeKI	GCWGC	2 cut(s)	403, 569
ApoI	RAATTY	1 cut(s)	119
AsiGI	ACCGGT	1 cut(s)	258
AspLEI	GCGC	3 cut(s)	69, 199, 560
AspS9I	GGNCC	4 cut(s)	148, 432, 439, 784
AsuC2I	CCSGG	4 cut(s)	83, 151, 792, 793
AsuHPI	GGTGA	2 cut(s)	37, 404
AvaI	CYCGRG	2 cut(s)	395, 791
AvaII	GGWCC	3 cut(s)	432, 439, 784
BanI	GGYRCC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	396
BbsI	GAAGAC	2 cut(s)	549, 738
BbvCI	CCTCAGC	1 cut(s)	200
BbvI	GCAGC	2 cut(s)	390, 556
BccI	CCATC	2 cut(s)	749, 871
BciT130I	CCWGG	1 cut(s)	436
BcnI	CCSGG	4 cut(s)	83, 151, 792, 793
BfoI	RGCGCY	2 cut(s)	200, 561
BglI	GCCNNNNNGGC	1 cut(s)	183
Bme1390I	CCNGG	5 cut(s)	83, 151, 436, 792, 793
Bme18I	GGWCC	3 cut(s)	432, 439, 784
BmeT110I	CYCGRG	2 cut(s)	395, 791
BmgBI	CACGTC	1 cut(s)	277
BmgT120I	GGNCC	4 cut(s)	148, 432, 439, 784
BmiI	GGNNCC	4 cut(s)	73, 433, 440, 441
BmrFI	CCNGG	5 cut(s)	83, 151, 436, 792, 793
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	3 cut(s)	460, 658, 730
BmuI	ACTGGG	1 cut(s)	498
BpiI	GAAGAC	2 cut(s)	549, 738
BplI	GAGNNNNNCTC	2 cut(s)	32, 64
Bpu10I	CCTNAGC	1 cut(s)	200
BpuMI	CCSGG	4 cut(s)	83, 151, 792, 793
Bsa29I	ATCGAT	1 cut(s)	156
BsaHI	GRCGYC	3 cut(s)	9, 285, 315
BsaJI	CCNNGG	4 cut(s)	372, 396, 435, 791
BsaWI	WCCGGW	2 cut(s)	258, 363
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 421, 488, 798
Bse118I	RCCGGY	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	436
BseCI	ATCGAT	1 cut(s)	156
BseDI	CCNNGG	4 cut(s)	372, 396, 435, 791
BseGI	GGATG	2 cut(s)	498, 882
BseLI	CCNNNNNNNGG	4 cut(s)	22, 421, 488, 798
BseMII	CTCAG	2 cut(s)	191, 917
BseNI	ACTGG	1 cut(s)	493
BseRI	GAGGAG	3 cut(s)	215, 225, 413
BseXI	GCAGC	2 cut(s)	390, 556
Bsh1236I	CGCG	3 cut(s)	69, 218, 244
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	5 cut(s)	149, 177, 232, 685, 862
BshNI	GGYRCC	1 cut(s)	71
BshTI	ACCGGT	1 cut(s)	258
BshVI	ATCGAT	1 cut(s)	156
BsiEI	CGRYCG	1 cut(s)	160
BsiHKCI	CYCGRG	2 cut(s)	395, 791
BsiSI	CCGG	6 cut(s)	83, 151, 229, 259, 364, 792
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	4 cut(s)	22, 421, 488, 798
BsmFI	GGGAC	1 cut(s)	425
BsnI	GGCC	5 cut(s)	149, 177, 232, 685, 862
BsoBI	CYCGRG	2 cut(s)	395, 791
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	3 cut(s)	153, 157, 165
BspANI	GGCC	5 cut(s)	149, 177, 232, 685, 862
BspCNI	CTCAG	2 cut(s)	192, 916
BspDI	ATCGAT	1 cut(s)	156
BspFNI	CGCG	3 cut(s)	69, 218, 244
BspLI	GGNNCC	4 cut(s)	73, 433, 440, 441
BspPI	GGATC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	493
BssAI	RCCGGY	1 cut(s)	258
BssECI	CCNNGG	4 cut(s)	372, 396, 435, 791
BssMI	GATC	3 cut(s)	153, 157, 165
BssNI	GRCGYC	3 cut(s)	9, 285, 315
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	436
Bst4CI	ACNGT	1 cut(s)	523
Bst6I	CTCTTC	3 cut(s)	201, 453, 654
BstACI	GRCGYC	3 cut(s)	9, 285, 315
BstDEI	CTNAG	3 cut(s)	200, 466, 903
BstEII	GGTNACC	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	498, 882
BstFNI	CGCG	3 cut(s)	69, 218, 244
BstH2I	RGCGCY	2 cut(s)	200, 561
BstHHI	GCGC	3 cut(s)	69, 199, 560
BstKTI	GATC	3 cut(s)	156, 160, 168
BstMBI	GATC	3 cut(s)	153, 157, 165
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	7 cut(s)	168, 183, 238, 400, 566, 682, 905
BstNI	CCWGG	1 cut(s)	436
BstNSI	RCATGY	1 cut(s)	67
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	5 cut(s)	81, 149, 434, 790, 791
BstUI	CGCG	3 cut(s)	69, 218, 244
BstV1I	GCAGC	2 cut(s)	390, 556
BstV2I	GAAGAC	2 cut(s)	549, 738
Bsu15I	ATCGAT	1 cut(s)	156
BsuRI	GGCC	5 cut(s)	149, 177, 232, 685, 862
BsuTUI	ATCGAT	1 cut(s)	156
BtrI	CACGTC	1 cut(s)	277
BtsCI	GGATG	2 cut(s)	498, 882
BtsIMutI	CAGTG	2 cut(s)	331, 534
CfoI	GCGC	3 cut(s)	69, 199, 560
Cfr10I	RCCGGY	1 cut(s)	258
Cfr13I	GGNCC	4 cut(s)	148, 432, 439, 784
Cfr9I	CCCGGG	1 cut(s)	791
ClaI	ATCGAT	1 cut(s)	156
CseI	GACGC	4 cut(s)	17, 224, 293, 304
Csp6I	GTAC	3 cut(s)	133, 802, 822
CspAI	ACCGGT	1 cut(s)	258
CviAII	CATG	2 cut(s)	64, 888
CviQI	GTAC	3 cut(s)	133, 802, 822
DdeI	CTNAG	3 cut(s)	200, 466, 903
DpnI	GATC	3 cut(s)	155, 159, 167
DpnII	GATC	3 cut(s)	153, 157, 165
EaeI	YGGCCR	1 cut(s)	175
Eam1104I	CTCTTC	3 cut(s)	201, 453, 654
EarI	CTCTTC	3 cut(s)	201, 453, 654
EciI	GGCGGA	2 cut(s)	20, 228
Eco130I	CCWWGG	1 cut(s)	372
Eco147I	AGGCCT	1 cut(s)	685
Eco24I	GRGCYC	1 cut(s)	396
Eco47I	GGWCC	3 cut(s)	432, 439, 784
Eco88I	CYCGRG	2 cut(s)	395, 791
Eco91I	GGTNACC	1 cut(s)	43
EcoO109I	RGGNCCY	3 cut(s)	432, 439, 784
EcoO65I	GGTNACC	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	372
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	2 cut(s)	67, 891
FaiI	YATR	5 cut(s)	65, 680, 750, 889, 896
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	2 cut(s)	63, 887
FauI	CCCGC	1 cut(s)	293
FblI	GTMKAC	1 cut(s)	213
FokI	GGATG	2 cut(s)	505, 889
FriOI	GRGCYC	1 cut(s)	396
GlaI	GCGC	3 cut(s)	68, 198, 559
HaeII	RGCGCY	2 cut(s)	200, 561
HaeIII	GGCC	5 cut(s)	149, 177, 232, 685, 862
HapII	CCGG	6 cut(s)	83, 151, 229, 259, 364, 792
HgaI	GACGC	4 cut(s)	17, 224, 293, 304
HhaI	GCGC	3 cut(s)	69, 199, 560
Hin1I	GRCGYC	3 cut(s)	9, 285, 315
Hin1II	CATG	2 cut(s)	67, 891
Hin6I	GCGC	3 cut(s)	67, 197, 558
HinP1I	GCGC	3 cut(s)	67, 197, 558
HincII	GTYRAC	2 cut(s)	214, 654
HindII	GTYRAC	2 cut(s)	214, 654
HinfI	GANTC	1 cut(s)	775
HpaII	CCGG	6 cut(s)	83, 151, 229, 259, 364, 792
HphI	GGTGA	2 cut(s)	37, 404
Hpy166II	GTNNAC	6 cut(s)	214, 283, 340, 358, 654, 811
Hpy188I	TCNGA	2 cut(s)	726, 853
Hpy188III	TCNNGA	1 cut(s)	105
Hpy8I	GTNNAC	6 cut(s)	214, 283, 340, 358, 654, 811
Hpy99I	CGWCG	5 cut(s)	35, 98, 218, 278, 320
HpyAV	CCTTC	6 cut(s)	139, 298, 506, 761, 792, 797
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4IV	ACGT	2 cut(s)	276, 735
HpyCH4V	TGCA	3 cut(s)	534, 572, 671
HpyF10VI	GCNNNNNNNGC	7 cut(s)	168, 183, 238, 400, 566, 682, 905
HpyF3I	CTNAG	3 cut(s)	200, 466, 903
HpySE526I	ACGT	2 cut(s)	276, 735
Hsp92I	GRCGYC	3 cut(s)	9, 285, 315
Hsp92II	CATG	2 cut(s)	67, 891
HspAI	GCGC	3 cut(s)	67, 197, 558
KflI	GGGWCCC	1 cut(s)	439
Kzo9I	GATC	3 cut(s)	153, 157, 165
LmnI	GCTCC	1 cut(s)	400
Lsp1109I	GCAGC	2 cut(s)	390, 556
LweI	GCATC	3 cut(s)	460, 658, 730
MaeII	ACGT	2 cut(s)	276, 735
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	3 cut(s)	155, 159, 167
MboI	GATC	3 cut(s)	153, 157, 165
MboII	GAAGA	5 cut(s)	218, 440, 554, 671, 743
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	3 cut(s)	119, 266, 503
MspA1I	CMGCKG	1 cut(s)	171
MspI	CCGG	6 cut(s)	83, 151, 229, 259, 364, 792
MspR9I	CCNGG	5 cut(s)	83, 151, 436, 792, 793
MvaI	CCWGG	1 cut(s)	436
MvnI	CGCG	3 cut(s)	69, 218, 244
MwoI	GCNNNNNNNGC	7 cut(s)	168, 183, 238, 400, 566, 682, 905
NciI	CCSGG	4 cut(s)	83, 151, 792, 793
NdeII	GATC	3 cut(s)	153, 157, 165
NlaIII	CATG	2 cut(s)	67, 891
NlaIV	GGNNCC	4 cut(s)	73, 433, 440, 441
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	67
PceI	AGGCCT	1 cut(s)	685
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	775
PflMI	CCANNNNNTGG	1 cut(s)	488
PinAI	ACCGGT	1 cut(s)	258
Ple19I	CGATCG	1 cut(s)	160
PpuMI	RGGWCCY	3 cut(s)	432, 439, 784
Psp5II	RGGWCCY	3 cut(s)	432, 439, 784
Psp6I	CCWGG	1 cut(s)	434
PspEI	GGTNACC	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	434
PspN4I	GGNNCC	4 cut(s)	73, 433, 440, 441
PspPI	GGNCC	4 cut(s)	148, 432, 439, 784
PspPPI	RGGWCCY	3 cut(s)	432, 439, 784
PvuI	CGATCG	1 cut(s)	160
RsaI	GTAC	3 cut(s)	134, 803, 823
RsaNI	GTAC	3 cut(s)	133, 802, 822
SalI	GTCGAC	1 cut(s)	212
Sau3AI	GATC	3 cut(s)	153, 157, 165
Sau96I	GGNCC	4 cut(s)	148, 432, 439, 784
ScrFI	CCNGG	5 cut(s)	83, 151, 436, 792, 793
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	3 cut(s)	460, 658, 730
SinI	GGWCC	3 cut(s)	432, 439, 784
SmaI	CCCGGG	1 cut(s)	793
Sse9I	AATT	3 cut(s)	119, 266, 503
SseBI	AGGCCT	1 cut(s)	685
SspI	AATATT	1 cut(s)	577
StuI	AGGCCT	1 cut(s)	685
StyD4I	CCNGG	5 cut(s)	81, 149, 434, 790, 791
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	523
TaiI	ACGT	2 cut(s)	279, 738
TaqI	TCGA	8 cut(s)	21, 116, 129, 156, 213, 390, 613, 666
TasI	AATT	3 cut(s)	119, 266, 503
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	775
TscAI	CASTG	2 cut(s)	331, 541
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	2 cut(s)	403, 569
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	4 cut(s)	509, 555, 598, 846
TspGWI	ACGGA	3 cut(s)	561, 671, 743
TspMI	CCCGGG	1 cut(s)	791
TspRI	CASTG	2 cut(s)	331, 541
Van91I	CCANNNNNTGG	1 cut(s)	488
VpaK11BI	GGWCC	3 cut(s)	432, 439, 784
XapI	RAATTY	1 cut(s)	119
XceI	RCATGY	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	870
XmaI	CCCGGG	1 cut(s)	791
XmiI	GTMKAC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.