Rh1DG457700

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0007598
Physical Location & Seq
Forward (+)
66255648 .. 66257548
1901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG457700.1

Sequence Viewer

Length: 915 bp
ATGGCTGCTGATGACTCATCCGAATTCCAGATAGGAACCTACGTGGAGGTCACGAGCCCAGTCCACTCCATGCGCGGCTCGCTTTTCCCGGCCAAAATCGTCGCCGCATCCGCCGATCGCGCCAAATTCACCGTCGAATACGACCGATTCAAGACCAAGCTCTACCGCAATGTCACCGGAAAAAGGTCGCTGCGGGACGAGTTCCACGTGGCGCTCCTCAGGCCGCCGCAGCCGCGGGAAGAGGGCTACGCCTTCAAGCGAAACGACGCCGTCGACGCTTTCATGGCCGGCGGGTGGTGGGAAGGAGTGATCACTGAGGAGCTGGGCGGCGCGCGTTTCGAGGTGTTTTTCCGGTTTGTGAAGCAGAGAGTTGAGTTTGAGGCGGATGAGCTGAGGCTTCATAGGGAGTGGGTCAGAGGGGTTTGGGTTCCTCCTCTGAGAGAAGAAGAGGGGGATGTGTCAAATACCAAGGACGAAAAGGCACAGATGAAGGAAGAAATTGGAGAAGGGACAGAAGTTGAGGTTTCCAATGATGAAGATGGATTTCAAGGCTCCTGGTTTGCGGCAAGCGTTGTCCAAGTAGTGGGGAAGGACAGATTTCTCATTCAGTATAAGAGCTTGAAAACGGATGATGGTAAAGAGTTCTTAACAGAAGAGATTGATGCACAACACATAAGGCCTTGTCCACCTGAAACTGTTATGGTTGATTGTTACAGTATGAATGAAGAGGTTGAAGCTTACTGGAATGATGGATGGTGGGAAGGTAAGATATGTAAGGTGCTGCTTGGGGGAAGGTACAAAGTTTACTTCGTGGGTACTGATGATAAAATGGTGTTTGACCACTCTGATTTAAGGCCACGTCAAGTTTGGATAGATCGAACTTGGGTTATGGCTTCTCAGGCACTCACGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

304

Amino Acids

35.1

Weight (kDa)

4.94

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 170 - 230 2.9e-21 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 583
AccI GTMKAC 1 cut(s) 273
AccII CGCG 5 cut(s) 75, 120, 235, 332, 334
AcoI YGGCCR 2 cut(s) 90, 285
AcsI RAATTY 2 cut(s) 23, 125
AcvI CACGTG 1 cut(s) 208
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 912
AfaI GTAC 2 cut(s) 797, 817
AfiI CCNNNNNNNGG 3 cut(s) 183, 294, 583
AgsI TTSAA 5 cut(s) 151, 256, 548, 622, 734
AjiI CACGTC 1 cut(s) 860
AjnI CCWGG 1 cut(s) 554
AluBI AGCT 5 cut(s) 160, 322, 391, 618, 737
AluI AGCT 5 cut(s) 160, 322, 391, 618, 737
AoxI GGCC 5 cut(s) 90, 221, 285, 677, 854
ApeKI GCWGC 4 cut(s) 5, 190, 229, 781
ApoI RAATTY 2 cut(s) 23, 125
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
AspLEI GCGC 5 cut(s) 75, 122, 214, 332, 334
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 2 cut(s) 121, 166
AxyI CCTNAGG 1 cut(s) 218
BanII GRGCYC 1 cut(s) 59
BauI CACGAG 1 cut(s) 52
BbrPI CACGTG 1 cut(s) 208
BbvCI CCTCAGC 1 cut(s) 392
BbvI GCAGC 3 cut(s) 177, 241, 768
BccI CCATC 4 cut(s) 533, 626, 743, 747
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 556
BclI TGATCA 1 cut(s) 309
BcnI CCSGG 1 cut(s) 89
BfoI RGCGCY 1 cut(s) 215
Bme1390I CCNGG 2 cut(s) 89, 556
BmgBI CACGTC 1 cut(s) 860
BmiI GGNNCC 3 cut(s) 37, 429, 553
BmrFI CCNGG 2 cut(s) 89, 556
BmrI ACTGGG 1 cut(s) 53
BmsI GCATC 2 cut(s) 116, 652
BmuI ACTGGG 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 392
BpuMI CCSGG 1 cut(s) 89
BsaAI YACGTR 2 cut(s) 43, 208
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 233, 468
BsaWI WCCGGW 2 cut(s) 176, 351
Bsc4I CCNNNNNNNGG 3 cut(s) 183, 294, 583
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 2 cut(s) 59, 746
Bse21I CCTNAGG 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 175
BseBI CCWGG 1 cut(s) 556
BseDI CCNNGG 2 cut(s) 233, 468
BseGI GGATG 6 cut(s) 17, 107, 391, 460, 634, 758
BseLI CCNNNNNNNGG 3 cut(s) 183, 294, 583
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 5 cut(s) 232, 306, 383, 428, 911
BseNI ACTGG 2 cut(s) 59, 746
BsePI GCGCGC 1 cut(s) 330
BseRI GAGGAG 3 cut(s) 206, 332, 423
BseXI GCAGC 3 cut(s) 177, 241, 768
BseYI CCCAGC 1 cut(s) 322
Bsh1236I CGCG 5 cut(s) 75, 120, 235, 332, 334
Bsh1285I CGRYCG 2 cut(s) 118, 145
BshFI GGCC 5 cut(s) 92, 223, 287, 679, 856
BsiEI CGRYCG 2 cut(s) 118, 145
BsiSI CCGG 4 cut(s) 89, 177, 288, 352
BslFI GGGAC 2 cut(s) 209, 523
BslI CCNNNNNNNGG 3 cut(s) 183, 294, 583
BsmFI GGGAC 2 cut(s) 209, 523
BsnI GGCC 5 cut(s) 92, 223, 287, 679, 856
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 3 cut(s) 115, 309, 874
BspANI GGCC 5 cut(s) 92, 223, 287, 679, 856
BspCNI CTCAG 5 cut(s) 231, 307, 384, 429, 910
BspFNI CGCG 5 cut(s) 75, 120, 235, 332, 334
BspLI GGNNCC 3 cut(s) 37, 429, 553
BsrDI GCAATG 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 2 cut(s) 59, 746
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 2 cut(s) 233, 468
BssHII GCGCGC 1 cut(s) 330
BssMI GATC 3 cut(s) 115, 309, 874
BssNI GRCGYC 1 cut(s) 267
BssSI CACGAG 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 468
Bst2BI CACGAG 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 556
Bst4CI ACNGT 3 cut(s) 133, 697, 716
Bst6I CTCTTC 4 cut(s) 234, 441, 648, 720
BstACI GRCGYC 1 cut(s) 267
BstBAI YACGTR 2 cut(s) 43, 208
BstC8I GCNNGC 4 cut(s) 80, 289, 332, 568
BstDEI CTNAG 5 cut(s) 218, 315, 392, 437, 897
BstDSI CCRYGG 1 cut(s) 233
BstF5I GGATG 6 cut(s) 17, 107, 391, 460, 634, 758
BstFNI CGCG 5 cut(s) 75, 120, 235, 332, 334
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 5 cut(s) 75, 122, 214, 332, 334
BstKTI GATC 3 cut(s) 118, 312, 877
BstMBI GATC 3 cut(s) 115, 309, 874
BstMCI CGRYCG 2 cut(s) 118, 145
BstMWI GCNNNNNNNGC 9 cut(s) 79, 110, 119, 220, 229, 232, 275, 284, 899
BstNI CCWGG 1 cut(s) 556
BstSCI CCNGG 2 cut(s) 87, 554
BstUI CGCG 5 cut(s) 75, 120, 235, 332, 334
BstV1I GCAGC 3 cut(s) 177, 241, 768
Bsu36I CCTNAGG 1 cut(s) 218
BsuRI GGCC 5 cut(s) 92, 223, 287, 679, 856
BtgI CCRYGG 1 cut(s) 233
BtrI CACGTC 1 cut(s) 860
BtsCI GGATG 6 cut(s) 17, 107, 391, 460, 634, 758
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 4 cut(s) 80, 289, 332, 568
CfoI GCGC 5 cut(s) 75, 122, 214, 332, 334
Cfr10I RCCGGY 1 cut(s) 287
Cfr42I CCGCGG 1 cut(s) 236
CseI GACGC 2 cut(s) 275, 284
Csp6I GTAC 2 cut(s) 796, 816
CviAII CATG 2 cut(s) 70, 283
CviQI GTAC 2 cut(s) 796, 816
DdeI CTNAG 5 cut(s) 218, 315, 392, 437, 897
DpnI GATC 3 cut(s) 117, 311, 876
DpnII GATC 3 cut(s) 115, 309, 874
DraIII CACNNNGTG 1 cut(s) 912
EaeI YGGCCR 2 cut(s) 90, 285
Eam1104I CTCTTC 4 cut(s) 234, 441, 648, 720
EarI CTCTTC 4 cut(s) 234, 441, 648, 720
EciI GGCGGA 2 cut(s) 100, 398
Eco130I CCWWGG 1 cut(s) 468
Eco147I AGGCCT 1 cut(s) 679
Eco24I GRGCYC 1 cut(s) 59
Eco72I CACGTG 1 cut(s) 208
Eco81I CCTNAGG 1 cut(s) 218
EcoRI GAATTC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 554
EcoT14I CCWWGG 1 cut(s) 468
EcoT38I GRGCYC 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 2 cut(s) 73, 286
FaiI YATR 9 cut(s) 71, 284, 402, 612, 674, 701, 719, 772, 890
FaqI GGGAC 2 cut(s) 209, 523
FatI CATG 2 cut(s) 69, 282
FauI CCCGC 3 cut(s) 186, 228, 284
FbaI TGATCA 1 cut(s) 309
FblI GTMKAC 1 cut(s) 273
FokI GGATG 6 cut(s) 4, 94, 398, 467, 641, 765
FriOI GRGCYC 1 cut(s) 59
GlaI GCGC 5 cut(s) 74, 121, 213, 331, 333
GsaI CCCAGC 1 cut(s) 326
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 5 cut(s) 92, 223, 287, 679, 856
HapII CCGG 4 cut(s) 89, 177, 288, 352
HgaI GACGC 2 cut(s) 275, 284
HhaI GCGC 5 cut(s) 75, 122, 214, 332, 334
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 2 cut(s) 73, 286
Hin6I GCGC 5 cut(s) 73, 120, 212, 330, 332
HinP1I GCGC 5 cut(s) 73, 120, 212, 330, 332
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 735
HinfI GANTC 2 cut(s) 14, 147
HpaII CCGG 4 cut(s) 89, 177, 288, 352
HphI GGTGA 2 cut(s) 121, 166
Hpy166II GTNNAC 4 cut(s) 64, 274, 686, 805
Hpy188I TCNGA 4 cut(s) 22, 416, 438, 847
Hpy188III TCNNGA 3 cut(s) 28, 52, 151
Hpy8I GTNNAC 4 cut(s) 64, 274, 686, 805
Hpy99I CGWCG 5 cut(s) 104, 137, 269, 275, 278
HpyAV CCTTC 7 cut(s) 262, 296, 484, 500, 583, 755, 786
HpyCH4III ACNGT 3 cut(s) 133, 697, 716
HpyCH4IV ACGT 3 cut(s) 42, 207, 859
HpyCH4V TGCA 1 cut(s) 665
HpyF10VI GCNNNNNNNGC 9 cut(s) 79, 110, 119, 220, 229, 232, 275, 284, 899
HpyF3I CTNAG 5 cut(s) 218, 315, 392, 437, 897
HpySE526I ACGT 3 cut(s) 42, 207, 859
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 2 cut(s) 73, 286
HspAI GCGC 5 cut(s) 73, 120, 212, 330, 332
KroI GCCGGC 1 cut(s) 287
KroNI GCCGGC 1 cut(s) 289
Ksp22I TGATCA 1 cut(s) 309
KspI CCGCGG 1 cut(s) 236
Kzo9I GATC 3 cut(s) 115, 309, 874
LmnI GCTCC 3 cut(s) 219, 319, 557
Lsp1109I GCAGC 3 cut(s) 177, 241, 768
LweI GCATC 2 cut(s) 116, 652
MaeII ACGT 3 cut(s) 42, 207, 859
MaeIII GTNAC 3 cut(s) 49, 172, 710
MalI GATC 3 cut(s) 117, 311, 876
MboI GATC 3 cut(s) 115, 309, 874
MboII GAAGA 7 cut(s) 251, 455, 458, 506, 548, 665, 737
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 3 cut(s) 23, 125, 498
MlyI GAGTC 1 cut(s) 8
MroNI GCCGGC 1 cut(s) 287
MseI TTAA 2 cut(s) 647, 851
MspA1I CMGCKG 1 cut(s) 235
MspI CCGG 4 cut(s) 89, 177, 288, 352
MspR9I CCNGG 2 cut(s) 89, 556
MvaI CCWGG 1 cut(s) 556
MvnI CGCG 5 cut(s) 75, 120, 235, 332, 334
MwoI GCNNNNNNNGC 9 cut(s) 79, 110, 119, 220, 229, 232, 275, 284, 899
NaeI GCCGGC 1 cut(s) 289
NciI CCSGG 1 cut(s) 89
NdeII GATC 3 cut(s) 115, 309, 874
NgoMIV GCCGGC 1 cut(s) 287
NlaIII CATG 2 cut(s) 73, 286
NlaIV GGNNCC 3 cut(s) 37, 429, 553
NmuCI GTSAC 2 cut(s) 49, 172
PauI GCGCGC 1 cut(s) 330
PceI AGGCCT 1 cut(s) 679
PcsI WCGNNNNNNNCGW 2 cut(s) 204, 270
PdiI GCCGGC 1 cut(s) 289
PfeI GAWTC 1 cut(s) 147
PflFI GACNNNGTC 1 cut(s) 269
PflMI CCANNNNNTGG 1 cut(s) 583
Ple19I CGATCG 1 cut(s) 118
PleI GAGTC 1 cut(s) 8
PmaCI CACGTG 1 cut(s) 208
PmlI CACGTG 1 cut(s) 208
PpsI GAGTC 1 cut(s) 8
Ppu21I YACGTR 2 cut(s) 43, 208
Psp6I CCWGG 1 cut(s) 554
PspCI CACGTG 1 cut(s) 208
PspFI CCCAGC 1 cut(s) 322
PspGI CCWGG 1 cut(s) 554
PspN4I GGNNCC 3 cut(s) 37, 429, 553
PsyI GACNNNGTC 1 cut(s) 269
PteI GCGCGC 1 cut(s) 330
PvuI CGATCG 1 cut(s) 118
RsaI GTAC 2 cut(s) 797, 817
RsaNI GTAC 2 cut(s) 796, 816
SacII CCGCGG 1 cut(s) 236
SalI GTCGAC 1 cut(s) 272
SaqAI TTAA 2 cut(s) 647, 851
Sau3AI GATC 3 cut(s) 115, 309, 874
SchI GAGTC 1 cut(s) 8
ScrFI CCNGG 2 cut(s) 89, 556
SduI GDGCHC 1 cut(s) 59
SfaNI GCATC 2 cut(s) 116, 652
Sfr303I CCGCGG 1 cut(s) 236
SgrBI CCGCGG 1 cut(s) 236
SgrDI CGTCGACG 1 cut(s) 272
Sse9I AATT 3 cut(s) 23, 125, 498
SseBI AGGCCT 1 cut(s) 679
StuI AGGCCT 1 cut(s) 679
StyD4I CCNGG 2 cut(s) 87, 554
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 3 cut(s) 133, 697, 716
TaiI ACGT 3 cut(s) 45, 210, 862
TaqI TCGA 4 cut(s) 135, 273, 339, 877
TaqII GACCGA 1 cut(s) 159
TasI AATT 3 cut(s) 23, 125, 498
TauI GCSGC 7 cut(s) 78, 107, 226, 229, 235, 330, 566
TfiI GAWTC 1 cut(s) 147
Tru1I TTAA 2 cut(s) 647, 851
Tru9I TTAA 2 cut(s) 647, 851
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 2 cut(s) 49, 172
TseI GCWGC 4 cut(s) 5, 190, 229, 781
Tsp45I GTSAC 2 cut(s) 49, 172
TspDTI ATGAA 6 cut(s) 271, 389, 503, 549, 734, 738
TspGWI ACGGA 1 cut(s) 641
TspRI CASTG 1 cut(s) 319
Tth111I GACNNNGTC 1 cut(s) 269
Van91I CCANNNNNTGG 1 cut(s) 583
XapI RAATTY 2 cut(s) 23, 125
XcmI CCANNNNNNNNNTGG 1 cut(s) 864
XmiI GTMKAC 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.