Rh7BG260300

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0007598
Physical Location & Seq
Reverse (-)
23754975 .. 23755193
219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG260300.1

Sequence Viewer

Length: 219 bp
ATGACCTCCCAGAAGATATCCTCCTCCACATTCTCCGATCGCGCCAAATTCACCGTCGAATACGACAGATTCAAGACCAAGCTCTACCGCAATGTCACCGGAAAAAAGTCGGTGCTGGACGAGTTCCACGTGGCGCTCCTCAGGCCGCCGCCGCCTCAGGAAGAGGACTACGCCTTCAAGAGAAACGACGCCATCAACGCTTTCATGGGCGGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

72

Amino Acids

8.33

Weight (kDa)

9.63

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 204
Acc36I ACCTGC 1 cut(s) 204
AccII CGCG 1 cut(s) 42
AciI CCGC 5 cut(s) 88, 146, 149, 152, 210
AcsI RAATTY 1 cut(s) 47
AcvI CACGTG 1 cut(s) 130
AcyI GRCGYC 1 cut(s) 189
AgsI TTSAA 2 cut(s) 73, 178
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
AoxI GGCC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 47
ArsI GACNNNNNNTTYG 2 cut(s) 39, 71
AspLEI GCGC 2 cut(s) 44, 136
AsuHPI GGTGA 2 cut(s) 43, 88
AxyI CCTNAGG 2 cut(s) 140, 156
BbrPI CACGTG 1 cut(s) 130
BccI CCATC 1 cut(s) 200
BfoI RGCGCY 1 cut(s) 137
BfuAI ACCTGC 1 cut(s) 204
BisI GCNGC 4 cut(s) 146, 149, 152, 211
BlsI GCNGC 4 cut(s) 147, 150, 153, 212
BsaAI YACGTR 1 cut(s) 130
BsaHI GRCGYC 1 cut(s) 189
BsaWI WCCGGW 1 cut(s) 98
Bse21I CCTNAGG 2 cut(s) 140, 156
Bse3DI GCAATG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 2 cut(s) 154, 170
BseRI GAGGAG 2 cut(s) 13, 128
Bsh1236I CGCG 1 cut(s) 42
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 1 cut(s) 145
BsiEI CGRYCG 1 cut(s) 40
BsiSI CCGG 1 cut(s) 99
BsnI GGCC 1 cut(s) 145
Bsp143I GATC 1 cut(s) 37
BspACI CCGC 5 cut(s) 88, 146, 149, 152, 210
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 2 cut(s) 153, 169
BspFNI CGCG 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 97
BssMI GATC 1 cut(s) 37
BssNI GRCGYC 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 189
BstBAI YACGTR 1 cut(s) 130
BstDEI CTNAG 2 cut(s) 140, 156
BstFNI CGCG 1 cut(s) 42
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 2 cut(s) 44, 136
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 3 cut(s) 142, 151, 197
BstUI CGCG 1 cut(s) 42
Bsu36I CCTNAGG 2 cut(s) 140, 156
BsuRI GGCC 1 cut(s) 145
BveI ACCTGC 1 cut(s) 204
CfoI GCGC 2 cut(s) 44, 136
CseI GACGC 1 cut(s) 197
CviAII CATG 1 cut(s) 205
CviJI RGCY 2 cut(s) 82, 145
CviKI_1 RGCY 2 cut(s) 82, 145
DdeI CTNAG 2 cut(s) 140, 156
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco32I GATATC 1 cut(s) 18
Eco72I CACGTG 1 cut(s) 130
Eco81I CCTNAGG 2 cut(s) 140, 156
EcoRV GATATC 1 cut(s) 18
FaeI CATG 1 cut(s) 208
FaiI YATR 1 cut(s) 206
FatI CATG 1 cut(s) 204
Fnu4HI GCNGC 4 cut(s) 146, 149, 152, 211
Fsp4HI GCNGC 4 cut(s) 146, 149, 152, 211
GlaI GCGC 2 cut(s) 43, 135
GluI GCNGC 4 cut(s) 146, 149, 152, 211
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 1 cut(s) 145
HapII CCGG 1 cut(s) 99
HgaI GACGC 1 cut(s) 197
HhaI GCGC 2 cut(s) 44, 136
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 2 cut(s) 42, 134
HinP1I GCGC 2 cut(s) 42, 134
HinfI GANTC 1 cut(s) 69
HpaII CCGG 1 cut(s) 99
HphI GGTGA 2 cut(s) 43, 88
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 3 cut(s) 73, 158, 178
Hpy99I CGWCG 2 cut(s) 59, 191
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 151, 197
HpyF3I CTNAG 2 cut(s) 140, 156
HpySE526I ACGT 1 cut(s) 129
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 2 cut(s) 42, 134
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 141
LpnPI CCDG 6 cut(s) 23, 101, 112, 127, 143, 199
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 94
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 2 cut(s) 25, 173
MluCI AATT 1 cut(s) 47
MnlI CCTC 6 cut(s) 16, 31, 34, 149, 157, 165
MspI CCGG 1 cut(s) 99
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 3 cut(s) 142, 151, 197
NdeII GATC 1 cut(s) 37
NlaIII CATG 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 94
PaqCI CACCTGC 1 cut(s) 204
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PfeI GAWTC 1 cut(s) 69
PkrI GCNGC 4 cut(s) 147, 150, 153, 212
Ple19I CGATCG 1 cut(s) 40
PmaCI CACGTG 1 cut(s) 130
PmlI CACGTG 1 cut(s) 130
Ppu21I YACGTR 1 cut(s) 130
PspCI CACGTG 1 cut(s) 130
PvuI CGATCG 1 cut(s) 40
SatI GCNGC 4 cut(s) 146, 149, 152, 211
Sau3AI GATC 1 cut(s) 37
SetI ASST 4 cut(s) 8, 84, 132, 218
Sse9I AATT 1 cut(s) 47
SsiI CCGC 5 cut(s) 88, 146, 149, 152, 210
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 1 cut(s) 132
TaqI TCGA 1 cut(s) 57
TasI AATT 1 cut(s) 47
TauI GCSGC 4 cut(s) 148, 151, 154, 213
TfiI GAWTC 1 cut(s) 69
TseFI GTSAC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 193
XapI RAATTY 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.