Rw1G040510

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0007598
Physical Location & Seq
Reverse (-)
67758076 .. 67759875
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G040510.1

Sequence Viewer

Length: 888 bp
ATGGCTGCTGATGACTCATCCGAATTCCAGATAGGAACCTACGTGGAGGTCACGAGCCCAGTCCACTCCATGCGCGGCTCGCTTTTCCCGGCCAAAATCGTCGCCGCATCCGCCGATCGCGCCAAATTCACCGTCGAATACGACCGATTCAAGACCAAGCTCTACCGCAATGTCACTGGAAAAAGGTCGCTGCGGGACGAGTTCCACGTGGCGCTCCTCAGGCCGCCGCAGCCGCGGGAAGAGGGCTACGCCTTCAAGCGAAACGACGCCGTCGACGCTTTCATGGCCGGCGGGTGGTGGGAGGGAGTGATCACTGAGGAGCTGGGCGGCGCGCGTTTCGAGGTGTTTTTCCGGTTTGTGAAGCAGAGAGTTGAGTTTGAGGCAGATGAGCTGAGGCTTCATAGGGAGTGGGTCAGAGGGGCTTGGGATGTGTCAAATACCAAGGACGAAAAGGCACAGATGAAGGAAGAAATTGGAGAAGGGACAGAAGTTGAGGTTTCCAATGATGAAGATGGATTTCAAGGCTCCTGGTTTGCGGCAAGCATTGTCCAAGTAGTGGGGAAGGACAGATTTCTCATTCAGTATAAGAGCTTGAAAACGGATGATGGTAAAGAGTTCTTAACAGAAGAGATTGATGCACAACACATAAGGCCTTGTCCACCTGAAACTGTTATGGTTGATTGTTACAGTATGAATGAAGAGGTTGAAGCTTACTGGAATGATGGATGGTGGGAAGGTAAGATATGTAAGGTGCTGCTTGGGGGAAGGTACAAAGTTTACTTCGAGGGTACTAATGATAAAATGGTGTTTGACCACTCTGATTTAAGGCCACGTCAAGTTTGGATAGATCGAACTTGGGTTATGGCTTCTCAGGCACTCATGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

295

Amino Acids

34.14

Weight (kDa)

5.02

Isoelectric Point (pI)

30.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 161 - 221 2.6e-21 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 556
AccI GTMKAC 1 cut(s) 273
AccII CGCG 5 cut(s) 75, 120, 235, 332, 334
AcoI YGGCCR 2 cut(s) 90, 285
AcsI RAATTY 2 cut(s) 23, 125
AcvI CACGTG 1 cut(s) 208
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 2 cut(s) 770, 790
AfiI CCNNNNNNNGG 2 cut(s) 294, 556
AgsI TTSAA 5 cut(s) 151, 256, 521, 595, 707
AjiI CACGTC 1 cut(s) 833
AjnI CCWGG 1 cut(s) 527
AluBI AGCT 5 cut(s) 160, 322, 391, 591, 710
AluI AGCT 5 cut(s) 160, 322, 391, 591, 710
AoxI GGCC 5 cut(s) 90, 221, 285, 650, 827
ApeKI GCWGC 4 cut(s) 5, 190, 229, 754
ApoI RAATTY 2 cut(s) 23, 125
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
AspLEI GCGC 5 cut(s) 75, 122, 214, 332, 334
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 121
AxyI CCTNAGG 1 cut(s) 218
BanII GRGCYC 1 cut(s) 59
BauI CACGAG 1 cut(s) 52
BbrPI CACGTG 1 cut(s) 208
BbvCI CCTCAGC 1 cut(s) 392
BbvI GCAGC 3 cut(s) 177, 241, 741
BccI CCATC 4 cut(s) 506, 599, 716, 720
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 529
BclI TGATCA 1 cut(s) 309
BcnI CCSGG 1 cut(s) 89
BfoI RGCGCY 1 cut(s) 215
Bme1390I CCNGG 2 cut(s) 89, 529
BmgBI CACGTC 1 cut(s) 833
BmiI GGNNCC 2 cut(s) 37, 526
BmrFI CCNGG 2 cut(s) 89, 529
BmrI ACTGGG 1 cut(s) 53
BmsI GCATC 2 cut(s) 116, 625
BmuI ACTGGG 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 392
BpuMI CCSGG 1 cut(s) 89
BsaAI YACGTR 2 cut(s) 43, 208
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 233, 441
BsaWI WCCGGW 1 cut(s) 351
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 556
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 3 cut(s) 59, 181, 719
Bse21I CCTNAGG 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 175
BseBI CCWGG 1 cut(s) 529
BseDI CCNNGG 2 cut(s) 233, 441
BseGI GGATG 5 cut(s) 17, 107, 433, 607, 731
BseLI CCNNNNNNNGG 2 cut(s) 294, 556
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 4 cut(s) 232, 306, 383, 884
BseNI ACTGG 3 cut(s) 59, 181, 719
BsePI GCGCGC 1 cut(s) 330
BseRI GAGGAG 2 cut(s) 206, 332
BseXI GCAGC 3 cut(s) 177, 241, 741
BseYI CCCAGC 1 cut(s) 322
Bsh1236I CGCG 5 cut(s) 75, 120, 235, 332, 334
Bsh1285I CGRYCG 2 cut(s) 118, 145
BshFI GGCC 5 cut(s) 92, 223, 287, 652, 829
BsiEI CGRYCG 2 cut(s) 118, 145
BsiSI CCGG 3 cut(s) 89, 288, 352
BslFI GGGAC 2 cut(s) 209, 496
BslI CCNNNNNNNGG 2 cut(s) 294, 556
BsmFI GGGAC 2 cut(s) 209, 496
BsnI GGCC 5 cut(s) 92, 223, 287, 652, 829
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 3 cut(s) 115, 309, 847
BspANI GGCC 5 cut(s) 92, 223, 287, 652, 829
BspCNI CTCAG 4 cut(s) 231, 307, 384, 883
BspFNI CGCG 5 cut(s) 75, 120, 235, 332, 334
BspLI GGNNCC 2 cut(s) 37, 526
BsrDI GCAATG 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 3 cut(s) 59, 181, 719
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 2 cut(s) 233, 441
BssHII GCGCGC 1 cut(s) 330
BssMI GATC 3 cut(s) 115, 309, 847
BssNI GRCGYC 1 cut(s) 267
BssSI CACGAG 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 441
Bst2BI CACGAG 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 529
Bst4CI ACNGT 3 cut(s) 133, 670, 689
Bst6I CTCTTC 3 cut(s) 234, 621, 693
BstACI GRCGYC 1 cut(s) 267
BstBAI YACGTR 2 cut(s) 43, 208
BstC8I GCNNGC 4 cut(s) 80, 289, 332, 541
BstDEI CTNAG 4 cut(s) 218, 315, 392, 870
BstDSI CCRYGG 1 cut(s) 233
BstF5I GGATG 5 cut(s) 17, 107, 433, 607, 731
BstFNI CGCG 5 cut(s) 75, 120, 235, 332, 334
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 5 cut(s) 75, 122, 214, 332, 334
BstKTI GATC 3 cut(s) 118, 312, 850
BstMBI GATC 3 cut(s) 115, 309, 847
BstMCI CGRYCG 2 cut(s) 118, 145
BstMWI GCNNNNNNNGC 9 cut(s) 79, 110, 119, 220, 229, 232, 275, 284, 872
BstNI CCWGG 1 cut(s) 529
BstSCI CCNGG 2 cut(s) 87, 527
BstUI CGCG 5 cut(s) 75, 120, 235, 332, 334
BstV1I GCAGC 3 cut(s) 177, 241, 741
Bsu36I CCTNAGG 1 cut(s) 218
BsuRI GGCC 5 cut(s) 92, 223, 287, 652, 829
BtgI CCRYGG 1 cut(s) 233
BtrI CACGTC 1 cut(s) 833
BtsCI GGATG 5 cut(s) 17, 107, 433, 607, 731
BtsIMutI CAGTG 2 cut(s) 174, 312
Cac8I GCNNGC 4 cut(s) 80, 289, 332, 541
CfoI GCGC 5 cut(s) 75, 122, 214, 332, 334
Cfr10I RCCGGY 1 cut(s) 287
Cfr42I CCGCGG 1 cut(s) 236
CseI GACGC 2 cut(s) 275, 284
Csp6I GTAC 2 cut(s) 769, 789
CviAII CATG 3 cut(s) 70, 283, 880
CviQI GTAC 2 cut(s) 769, 789
DdeI CTNAG 4 cut(s) 218, 315, 392, 870
DpnI GATC 3 cut(s) 117, 311, 849
DpnII GATC 3 cut(s) 115, 309, 847
EaeI YGGCCR 2 cut(s) 90, 285
Eam1104I CTCTTC 3 cut(s) 234, 621, 693
EarI CTCTTC 3 cut(s) 234, 621, 693
EciI GGCGGA 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 441
Eco147I AGGCCT 1 cut(s) 652
Eco24I GRGCYC 1 cut(s) 59
Eco72I CACGTG 1 cut(s) 208
Eco81I CCTNAGG 1 cut(s) 218
EcoRI GAATTC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 527
EcoT14I CCWWGG 1 cut(s) 441
EcoT38I GRGCYC 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 441
FaeI CATG 3 cut(s) 73, 286, 883
FaqI GGGAC 2 cut(s) 209, 496
FatI CATG 3 cut(s) 69, 282, 879
FauI CCCGC 3 cut(s) 186, 228, 284
FbaI TGATCA 1 cut(s) 309
FblI GTMKAC 1 cut(s) 273
FokI GGATG 5 cut(s) 4, 94, 440, 614, 738
FriOI GRGCYC 1 cut(s) 59
GlaI GCGC 5 cut(s) 74, 121, 213, 331, 333
GsaI CCCAGC 1 cut(s) 326
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 5 cut(s) 92, 223, 287, 652, 829
HapII CCGG 3 cut(s) 89, 288, 352
HgaI GACGC 2 cut(s) 275, 284
HhaI GCGC 5 cut(s) 75, 122, 214, 332, 334
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 3 cut(s) 73, 286, 883
Hin6I GCGC 5 cut(s) 73, 120, 212, 330, 332
HinP1I GCGC 5 cut(s) 73, 120, 212, 330, 332
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 708
HinfI GANTC 2 cut(s) 14, 147
HpaII CCGG 3 cut(s) 89, 288, 352
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 4 cut(s) 64, 274, 659, 778
Hpy188I TCNGA 3 cut(s) 22, 416, 820
Hpy188III TCNNGA 3 cut(s) 28, 52, 151
Hpy8I GTNNAC 4 cut(s) 64, 274, 659, 778
Hpy99I CGWCG 5 cut(s) 104, 137, 269, 275, 278
HpyAV CCTTC 6 cut(s) 262, 457, 473, 556, 728, 759
HpyCH4III ACNGT 3 cut(s) 133, 670, 689
HpyCH4IV ACGT 3 cut(s) 42, 207, 832
HpyCH4V TGCA 2 cut(s) 638, 883
HpyF10VI GCNNNNNNNGC 9 cut(s) 79, 110, 119, 220, 229, 232, 275, 284, 872
HpyF3I CTNAG 4 cut(s) 218, 315, 392, 870
HpySE526I ACGT 3 cut(s) 42, 207, 832
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 3 cut(s) 73, 286, 883
HspAI GCGC 5 cut(s) 73, 120, 212, 330, 332
KroI GCCGGC 1 cut(s) 287
KroNI GCCGGC 1 cut(s) 289
Ksp22I TGATCA 1 cut(s) 309
KspI CCGCGG 1 cut(s) 236
Kzo9I GATC 3 cut(s) 115, 309, 847
LmnI GCTCC 3 cut(s) 219, 319, 530
Lsp1109I GCAGC 3 cut(s) 177, 241, 741
LweI GCATC 2 cut(s) 116, 625
MaeII ACGT 3 cut(s) 42, 207, 832
MaeIII GTNAC 3 cut(s) 49, 172, 683
MalI GATC 3 cut(s) 117, 311, 849
MboI GATC 3 cut(s) 115, 309, 847
MboII GAAGA 5 cut(s) 251, 479, 521, 638, 710
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 3 cut(s) 23, 125, 471
MlyI GAGTC 1 cut(s) 8
MroNI GCCGGC 1 cut(s) 287
MseI TTAA 2 cut(s) 620, 824
MspA1I CMGCKG 1 cut(s) 235
MspI CCGG 3 cut(s) 89, 288, 352
MspR9I CCNGG 2 cut(s) 89, 529
MvaI CCWGG 1 cut(s) 529
MvnI CGCG 5 cut(s) 75, 120, 235, 332, 334
MwoI GCNNNNNNNGC 9 cut(s) 79, 110, 119, 220, 229, 232, 275, 284, 872
NaeI GCCGGC 1 cut(s) 289
NciI CCSGG 1 cut(s) 89
NdeII GATC 3 cut(s) 115, 309, 847
NgoMIV GCCGGC 1 cut(s) 287
NlaIII CATG 3 cut(s) 73, 286, 883
NlaIV GGNNCC 2 cut(s) 37, 526
NmuCI GTSAC 2 cut(s) 49, 172
PauI GCGCGC 1 cut(s) 330
PceI AGGCCT 1 cut(s) 652
PcsI WCGNNNNNNNCGW 2 cut(s) 204, 270
PdiI GCCGGC 1 cut(s) 289
PfeI GAWTC 1 cut(s) 147
PflFI GACNNNGTC 1 cut(s) 269
PflMI CCANNNNNTGG 1 cut(s) 556
Ple19I CGATCG 1 cut(s) 118
PleI GAGTC 1 cut(s) 8
PmaCI CACGTG 1 cut(s) 208
PmlI CACGTG 1 cut(s) 208
PpsI GAGTC 1 cut(s) 8
Ppu21I YACGTR 2 cut(s) 43, 208
Psp6I CCWGG 1 cut(s) 527
PspCI CACGTG 1 cut(s) 208
PspFI CCCAGC 1 cut(s) 322
PspGI CCWGG 1 cut(s) 527
PspN4I GGNNCC 2 cut(s) 37, 526
PsyI GACNNNGTC 1 cut(s) 269
PteI GCGCGC 1 cut(s) 330
PvuI CGATCG 1 cut(s) 118
RsaI GTAC 2 cut(s) 770, 790
RsaNI GTAC 2 cut(s) 769, 789
SacII CCGCGG 1 cut(s) 236
SalI GTCGAC 1 cut(s) 272
SaqAI TTAA 2 cut(s) 620, 824
Sau3AI GATC 3 cut(s) 115, 309, 847
SchI GAGTC 1 cut(s) 8
ScrFI CCNGG 2 cut(s) 89, 529
SduI GDGCHC 1 cut(s) 59
SfaNI GCATC 2 cut(s) 116, 625
Sfr303I CCGCGG 1 cut(s) 236
SgrBI CCGCGG 1 cut(s) 236
SgrDI CGTCGACG 1 cut(s) 272
Sse9I AATT 3 cut(s) 23, 125, 471
SseBI AGGCCT 1 cut(s) 652
StuI AGGCCT 1 cut(s) 652
StyD4I CCNGG 2 cut(s) 87, 527
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 3 cut(s) 133, 670, 689
TaiI ACGT 3 cut(s) 45, 210, 835
TaqI TCGA 5 cut(s) 135, 273, 339, 783, 850
TaqII GACCGA 1 cut(s) 159
TasI AATT 3 cut(s) 23, 125, 471
TauI GCSGC 7 cut(s) 78, 107, 226, 229, 235, 330, 539
TfiI GAWTC 1 cut(s) 147
Tru1I TTAA 2 cut(s) 620, 824
Tru9I TTAA 2 cut(s) 620, 824
TscAI CASTG 2 cut(s) 181, 319
TseFI GTSAC 2 cut(s) 49, 172
TseI GCWGC 4 cut(s) 5, 190, 229, 754
Tsp45I GTSAC 2 cut(s) 49, 172
TspDTI ATGAA 6 cut(s) 271, 389, 476, 522, 707, 711
TspGWI ACGGA 1 cut(s) 614
TspRI CASTG 2 cut(s) 181, 319
Tth111I GACNNNGTC 1 cut(s) 269
Van91I CCANNNNNTGG 1 cut(s) 556
XapI RAATTY 2 cut(s) 23, 125
XcmI CCANNNNNNNNNTGG 1 cut(s) 837
XmiI GTMKAC 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.