Agenet domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G09320 |
| fragaria_vesca | FvH4_7g33450 FvH4_7g33450 |
| malus_domestica | MD01G1232500.v1.1 MD07G1304600.v1.1 MD07G1304800.v1.1 |
| prunus_persica | Prupe.2G323100_v2.0.a1 |
| pyrus_communis | pycom01g24100 pycom07g27740 pycom07g27770 |
| rosa_chinensis | RchiOBHm_Chr1g0383531 |
| rosa_laevigata | RLG00000009721 RLG00000026102 |
| rosa_multiflora | Rmu_sc0000255.1_g000047 Rmu_sc0012471.1_g000016 |
| rosa_roxburghii | Rroxscaffold_4G00277300 |
| rosa_rugosa | Rorug01G0441700 Rorug01G0441800 |
| rosa_samantha | Rh1AG467300 Rh1BG424900 Rh1CG437600 Rh1DG457700 Rh7BG260300 |
| rosa_wichuraiana | Rw1G040510 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 175 |
| AclWI | GGATC | 1 cut(s) | 166 |
| AcuI | CTGAAG | 1 cut(s) | 224 |
| AfaI | GTAC | 2 cut(s) | 200, 220 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 103 |
| AlwI | GGATC | 1 cut(s) | 166 |
| AoxI | GGCC | 2 cut(s) | 80, 257 |
| ApeKI | GCWGC | 1 cut(s) | 235 |
| BbvI | GCAGC | 1 cut(s) | 222 |
| BccI | CCATC | 1 cut(s) | 272 |
| BfaI | CTAG | 1 cut(s) | 98 |
| BisI | GCNGC | 1 cut(s) | 236 |
| BlsI | GCNGC | 1 cut(s) | 237 |
| BmsI | GCATC | 1 cut(s) | 55 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 103 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 103 |
| BseXI | GCAGC | 1 cut(s) | 222 |
| BshFI | GGCC | 2 cut(s) | 82, 259 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 103 |
| BsnI | GGCC | 2 cut(s) | 82, 259 |
| Bsp143I | GATC | 1 cut(s) | 171 |
| BspACI | CCGC | 1 cut(s) | 175 |
| BspANI | GGCC | 2 cut(s) | 82, 259 |
| BspPI | GGATC | 1 cut(s) | 166 |
| BssMI | GATC | 1 cut(s) | 171 |
| BstDEI | CTNAG | 1 cut(s) | 300 |
| BstKTI | GATC | 1 cut(s) | 174 |
| BstMBI | GATC | 1 cut(s) | 171 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 79, 241 |
| BstV1I | GCAGC | 1 cut(s) | 222 |
| BsuRI | GGCC | 2 cut(s) | 82, 259 |
| BtsIMutI | CAGTG | 1 cut(s) | 124 |
| Csp6I | GTAC | 2 cut(s) | 199, 219 |
| CviAII | CATG | 1 cut(s) | 12 |
| CviJI | RGCY | 3 cut(s) | 82, 107, 259 |
| CviKI_1 | RGCY | 3 cut(s) | 82, 107, 259 |
| CviQI | GTAC | 2 cut(s) | 199, 219 |
| DdeI | CTNAG | 1 cut(s) | 300 |
| DpnI | GATC | 1 cut(s) | 173 |
| DpnII | GATC | 1 cut(s) | 171 |
| Eco147I | AGGCCT | 1 cut(s) | 82 |
| Eco57I | CTGAAG | 1 cut(s) | 224 |
| FaeI | CATG | 1 cut(s) | 15 |
| FaiI | YATR | 3 cut(s) | 13, 147, 307 |
| FatI | CATG | 1 cut(s) | 11 |
| Fnu4HI | GCNGC | 1 cut(s) | 236 |
| Fsp4HI | GCNGC | 1 cut(s) | 236 |
| FspBI | CTAG | 1 cut(s) | 98 |
| GluI | GCNGC | 1 cut(s) | 236 |
| HaeIII | GGCC | 2 cut(s) | 82, 259 |
| Hin1II | CATG | 1 cut(s) | 15 |
| HinfI | GANTC | 1 cut(s) | 6 |
| Hpy166II | GTNNAC | 1 cut(s) | 208 |
| Hpy188I | TCNGA | 1 cut(s) | 250 |
| Hpy8I | GTNNAC | 1 cut(s) | 208 |
| HpyAV | CCTTC | 3 cut(s) | 158, 189, 194 |
| HpyCH4IV | ACGT | 1 cut(s) | 180 |
| HpyCH4V | TGCA | 2 cut(s) | 15, 68 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 79, 241 |
| HpyF3I | CTNAG | 1 cut(s) | 300 |
| HpySE526I | ACGT | 1 cut(s) | 180 |
| Hsp92II | CATG | 1 cut(s) | 15 |
| Kzo9I | GATC | 1 cut(s) | 171 |
| LpnPI | CCDG | 3 cut(s) | 89, 142, 287 |
| Lsp1109I | GCAGC | 1 cut(s) | 222 |
| LweI | GCATC | 1 cut(s) | 55 |
| MaeI | CTAG | 1 cut(s) | 98 |
| MaeII | ACGT | 1 cut(s) | 180 |
| MaeIII | GTNAC | 1 cut(s) | 121 |
| MalI | GATC | 1 cut(s) | 173 |
| MboI | GATC | 1 cut(s) | 171 |
| MnlI | CCTC | 3 cut(s) | 99, 124, 249 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 79, 241 |
| NdeII | GATC | 1 cut(s) | 171 |
| NlaIII | CATG | 1 cut(s) | 15 |
| PceI | AGGCCT | 1 cut(s) | 82 |
| PfeI | GAWTC | 1 cut(s) | 6 |
| PkrI | GCNGC | 1 cut(s) | 237 |
| RsaI | GTAC | 2 cut(s) | 200, 220 |
| RsaNI | GTAC | 2 cut(s) | 199, 219 |
| SatI | GCNGC | 1 cut(s) | 236 |
| Sau3AI | GATC | 1 cut(s) | 171 |
| SetI | ASST | 7 cut(s) | 99, 135, 169, 183, 200, 220, 306 |
| SfaNI | GCATC | 1 cut(s) | 55 |
| SseBI | AGGCCT | 1 cut(s) | 82 |
| SsiI | CCGC | 1 cut(s) | 175 |
| SspMI | CTAG | 1 cut(s) | 98 |
| StuI | AGGCCT | 1 cut(s) | 82 |
| TaiI | ACGT | 1 cut(s) | 183 |
| TaqI | TCGA | 1 cut(s) | 63 |
| TfiI | GAWTC | 1 cut(s) | 6 |
| TscAI | CASTG | 1 cut(s) | 124 |
| TseI | GCWGC | 1 cut(s) | 235 |
| TspDTI | ATGAA | 1 cut(s) | 243 |
| TspRI | CASTG | 1 cut(s) | 124 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 267 |
| XspI | CTAG | 1 cut(s) | 98 |