Prupe.2G323100_v2.0.a1

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0007598
Physical Location & Seq
Forward (+)
29947943 .. 29951071
3129 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G323100.1

Sequence Viewer

Length: 921 bp
ATGGTTGGCTCCAATTTCAAGATTGGCGACGAGGTGGAGGTGACCAGTCCAATCCACAATATGCGTGGCACTCTGTTCCCGGCAAAAATCATCGGCAAGTCGAGAGATAAAACCAAGTTGAAAGTTGAATATAACAAAGTGAAGGCCAAGATTGATGGCAATCTAGGCAGGAGGAAGAGGCACCAGCAGCGCAACGAGGTGGAGGAAGAGGTGGACGTGGCGCTCATAAGGCCCTTGCCGCCCGAAGAAAGTAAGTACTGCTGCTTCAAGTTAGGCGACGTCGTTGATGCCTTCTTCTGTGGCGGGTGGTGGGAGGGAGTCATCACTGATGTTATGAAGGACTCGACGTTTGGGATTTATTTTCGGTTTGCCAAGGAGGAGTTTGAGTTTGAGTCGGAGGAGCTCAGGCTTCACCGGGAGTGGGTCAAGGGCTCTTGGCTTCCACCTCTTCAACAAGGCGATGTCTCAACTACCGAGGAACCAAAGCTCTGGATGAAAGAGGACTTTGTACAAGGAACACAAGTTGAGATTTGCACTGATGAAGATGGATTTCAAGGTGCTTGGTTTGCTGCAAATATTGTCAAAGTAATGGGGAAGGACAAATTTCTCATTCGATATAAGAGCATAAAAACAGATGATGGTAAAGAGTTCTTGACAGAAGAGGTCGATGCACAGCACATAAGGCCTTGTCCACCTGAAACTGTTGTGGTTGAAAGTTTTAGTCTGAATGAAGAGGTTGATGCTTTCTATAATGATGGATGGTGGGAAGGTGTGATCCGCAAGGTCCTTCGTGGGCCAAGGTACAGAGTTTACTTCAAAGGTACAAAAGATGAATTGCTGTTTGAGCACTCTGATTTGAGACCACGCCAAGATTGGATAGATAGAACATGGGTTATGGCTTCTCAGGCATTGAAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

307

Amino Acids

35.67

Weight (kDa)

5.49

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 282
AccB1I GGYRCC 1 cut(s) 180
AciI CCGC 3 cut(s) 239, 303, 778
AclWI GGATC 1 cut(s) 769
AcsI RAATTY 1 cut(s) 602
AcyI GRCGYC 1 cut(s) 279
AfaI GTAC 4 cut(s) 257, 510, 803, 823
AfiI CCNNNNNNNGG 1 cut(s) 421
AgsI TTSAA 9 cut(s) 19, 121, 128, 268, 452, 554, 713, 817, 913
AjiI CACGTC 1 cut(s) 217
AluBI AGCT 2 cut(s) 403, 487
AluI AGCT 2 cut(s) 403, 487
Alw21I GWGCWC 2 cut(s) 405, 849
Alw26I GTCTC 2 cut(s) 469, 853
AlwI GGATC 1 cut(s) 769
AoxI GGCC 4 cut(s) 144, 230, 683, 794
ApeKI GCWGC 3 cut(s) 187, 261, 569
ApoI RAATTY 1 cut(s) 602
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AspLEI GCGC 2 cut(s) 192, 223
AspS9I GGNCC 3 cut(s) 231, 784, 794
AsuC2I CCSGG 2 cut(s) 80, 416
AsuHPI GGTGA 2 cut(s) 52, 404
AvaII GGWCC 1 cut(s) 784
BanI GGYRCC 1 cut(s) 180
BanII GRGCYC 2 cut(s) 405, 434
BarI GAAGNNNNNNTAC 2 cut(s) 248, 280
Bbv12I GWGCWC 2 cut(s) 405, 849
BbvI GCAGC 3 cut(s) 199, 248, 556
BccI CCATC 5 cut(s) 149, 539, 632, 749, 753
BcnI CCSGG 2 cut(s) 80, 416
BcoDI GTCTC 2 cut(s) 469, 853
BfaI CTAG 1 cut(s) 164
BfoI RGCGCY 1 cut(s) 224
BisI GCNGC 4 cut(s) 188, 239, 262, 570
BlsI GCNGC 4 cut(s) 189, 240, 263, 571
BmcAI AGTACT 1 cut(s) 257
Bme1390I CCNGG 2 cut(s) 80, 416
Bme18I GGWCC 1 cut(s) 784
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 3 cut(s) 231, 784, 794
BmiI GGNNCC 3 cut(s) 10, 182, 480
BmrFI CCNGG 2 cut(s) 80, 416
BmsI GCATC 3 cut(s) 277, 658, 730
Bpu10I CCTNAGC 1 cut(s) 404
BpuMI CCSGG 2 cut(s) 80, 416
BsaBI GATNNNNATC 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 853
BsaJI CCNNGG 3 cut(s) 372, 474, 797
BsaXI ACNNNNNCTCC 2 cut(s) 371, 401
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse1I ACTGG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 159
BseDI CCNNGG 3 cut(s) 372, 474, 797
BseGI GGATG 2 cut(s) 498, 764
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMII CTCAG 2 cut(s) 418, 917
BseNI ACTGG 1 cut(s) 45
BseRI GAGGAG 2 cut(s) 392, 413
BseXI GCAGC 3 cut(s) 199, 248, 556
BshFI GGCC 4 cut(s) 146, 232, 685, 796
BshNI GGYRCC 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 405, 849
BsiSI CCGG 2 cut(s) 80, 415
BslI CCNNNNNNNGG 1 cut(s) 421
BsmAI GTCTC 2 cut(s) 469, 853
BsnI GGCC 4 cut(s) 146, 232, 685, 796
Bso31I GGTCTC 1 cut(s) 853
Bsp1286I GDGCHC 3 cut(s) 405, 434, 849
Bsp1407I TGTACA 1 cut(s) 508
Bsp143I GATC 1 cut(s) 774
BspACI CCGC 3 cut(s) 239, 303, 778
BspANI GGCC 4 cut(s) 146, 232, 685, 796
BspCNI CTCAG 2 cut(s) 417, 916
BspLI GGNNCC 3 cut(s) 10, 182, 480
BspPI GGATC 1 cut(s) 769
BspT107I GGYRCC 1 cut(s) 180
BspTNI GGTCTC 1 cut(s) 853
BsrGI TGTACA 1 cut(s) 508
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 3 cut(s) 372, 474, 797
BssMI GATC 1 cut(s) 774
BssNI GRCGYC 1 cut(s) 279
BssT1I CCWWGG 2 cut(s) 372, 797
Bst4CI ACNGT 1 cut(s) 703
Bst6I CTCTTC 5 cut(s) 170, 201, 453, 654, 726
BstACI GRCGYC 1 cut(s) 279
BstAUI TGTACA 1 cut(s) 508
BstDEI CTNAG 2 cut(s) 404, 903
BstEII GGTNACC 1 cut(s) 40
BstF5I GGATG 2 cut(s) 498, 764
BstH2I RGCGCY 1 cut(s) 224
BstHHI GCGC 2 cut(s) 192, 223
BstKTI GATC 1 cut(s) 777
BstMAI GTCTC 2 cut(s) 469, 853
BstMBI GATC 1 cut(s) 774
BstMWI GCNNNNNNNGC 8 cut(s) 165, 187, 229, 238, 566, 682, 844, 905
BstPI GGTNACC 1 cut(s) 40
BstSCI CCNGG 2 cut(s) 78, 414
BstV1I GCAGC 3 cut(s) 199, 248, 556
BstXI CCANNNNNNTGG 1 cut(s) 489
BsuRI GGCC 4 cut(s) 146, 232, 685, 796
BtgZI GCGATG 1 cut(s) 474
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 2 cut(s) 498, 764
BtsIMutI CAGTG 2 cut(s) 324, 534
CfoI GCGC 2 cut(s) 192, 223
Cfr13I GGNCC 3 cut(s) 231, 784, 794
Csp6I GTAC 4 cut(s) 256, 509, 802, 822
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviAII CATG 1 cut(s) 888
CviQI GTAC 4 cut(s) 256, 509, 802, 822
DdeI CTNAG 2 cut(s) 404, 903
DpnI GATC 1 cut(s) 776
DpnII GATC 1 cut(s) 774
Eam1104I CTCTTC 5 cut(s) 170, 201, 453, 654, 726
EarI CTCTTC 5 cut(s) 170, 201, 453, 654, 726
Ecl136II GAGCTC 1 cut(s) 403
Eco130I CCWWGG 2 cut(s) 372, 797
Eco147I AGGCCT 1 cut(s) 685
Eco24I GRGCYC 2 cut(s) 405, 434
Eco31I GGTCTC 1 cut(s) 853
Eco47I GGWCC 1 cut(s) 784
Eco53kI GAGCTC 1 cut(s) 403
Eco91I GGTNACC 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 403
EcoO109I RGGNCCY 2 cut(s) 231, 784
EcoO65I GGTNACC 1 cut(s) 40
EcoT14I CCWWGG 2 cut(s) 372, 797
EcoT38I GRGCYC 2 cut(s) 405, 434
ErhI CCWWGG 2 cut(s) 372, 797
FaeI CATG 1 cut(s) 891
FatI CATG 1 cut(s) 887
FauI CCCGC 1 cut(s) 296
Fnu4HI GCNGC 4 cut(s) 188, 239, 262, 570
FokI GGATG 2 cut(s) 505, 771
FriOI GRGCYC 2 cut(s) 405, 434
Fsp4HI GCNGC 4 cut(s) 188, 239, 262, 570
FspBI CTAG 1 cut(s) 164
GlaI GCGC 2 cut(s) 191, 222
GluI GCNGC 4 cut(s) 188, 239, 262, 570
HaeII RGCGCY 1 cut(s) 224
HaeIII GGCC 4 cut(s) 146, 232, 685, 796
HapII CCGG 2 cut(s) 80, 415
HhaI GCGC 2 cut(s) 192, 223
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 1 cut(s) 891
Hin6I GCGC 2 cut(s) 190, 221
HinP1I GCGC 2 cut(s) 190, 221
HinfI GANTC 3 cut(s) 318, 341, 392
HpaII CCGG 2 cut(s) 80, 415
HphI GGTGA 2 cut(s) 52, 404
Hpy166II GTNNAC 3 cut(s) 214, 692, 811
Hpy188I TCNGA 3 cut(s) 397, 726, 853
Hpy188III TCNNGA 4 cut(s) 19, 102, 490, 652
Hpy8I GTNNAC 3 cut(s) 214, 692, 811
Hpy99I CGWCG 4 cut(s) 32, 281, 284, 349
HpyAV CCTTC 6 cut(s) 136, 301, 331, 589, 761, 797
HpyCH4III ACNGT 1 cut(s) 703
HpyCH4IV ACGT 3 cut(s) 216, 279, 347
HpyCH4V TGCA 3 cut(s) 534, 572, 671
HpyF10VI GCNNNNNNNGC 8 cut(s) 165, 187, 229, 238, 566, 682, 844, 905
HpyF3I CTNAG 2 cut(s) 404, 903
HpySE526I ACGT 3 cut(s) 216, 279, 347
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 1 cut(s) 891
HspAI GCGC 2 cut(s) 190, 221
Kzo9I GATC 1 cut(s) 774
LmnI GCTCC 2 cut(s) 14, 400
LpnPI CCDG 9 cut(s) 58, 93, 154, 197, 391, 428, 475, 708, 890
Lsp1109I GCAGC 3 cut(s) 199, 248, 556
LweI GCATC 3 cut(s) 277, 658, 730
MaeI CTAG 1 cut(s) 164
MaeII ACGT 3 cut(s) 216, 279, 347
MaeIII GTNAC 1 cut(s) 40
MalI GATC 1 cut(s) 776
MboI GATC 1 cut(s) 774
MboII GAAGA 8 cut(s) 187, 218, 257, 286, 440, 554, 671, 743
MhlI GDGCHC 3 cut(s) 405, 434, 849
MluCI AATT 3 cut(s) 13, 602, 833
MlyI GAGTC 3 cut(s) 327, 335, 401
MmeI TCCRAC 1 cut(s) 375
MspI CCGG 2 cut(s) 80, 415
MspR9I CCNGG 2 cut(s) 80, 416
MwoI GCNNNNNNNGC 8 cut(s) 165, 187, 229, 238, 566, 682, 844, 905
NciI CCSGG 2 cut(s) 80, 416
NdeII GATC 1 cut(s) 774
NlaIII CATG 1 cut(s) 891
NlaIV GGNNCC 3 cut(s) 10, 182, 480
NmuCI GTSAC 1 cut(s) 40
PceI AGGCCT 1 cut(s) 685
PkrI GCNGC 4 cut(s) 189, 240, 263, 571
PleI GAGTC 3 cut(s) 326, 335, 400
PpsI GAGTC 3 cut(s) 326, 335, 400
PpuMI RGGWCCY 1 cut(s) 784
Psp124BI GAGCTC 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 784
PspEI GGTNACC 1 cut(s) 40
PspN4I GGNNCC 3 cut(s) 10, 182, 480
PspPI GGNCC 3 cut(s) 231, 784, 794
PspPPI RGGWCCY 1 cut(s) 784
RsaI GTAC 4 cut(s) 257, 510, 803, 823
RsaNI GTAC 4 cut(s) 256, 509, 802, 822
SacI GAGCTC 1 cut(s) 405
SatI GCNGC 4 cut(s) 188, 239, 262, 570
Sau3AI GATC 1 cut(s) 774
Sau96I GGNCC 3 cut(s) 231, 784, 794
ScaI AGTACT 1 cut(s) 257
SchI GAGTC 3 cut(s) 327, 335, 401
ScrFI CCNGG 2 cut(s) 80, 416
SduI GDGCHC 3 cut(s) 405, 434, 849
SfaNI GCATC 3 cut(s) 277, 658, 730
SinI GGWCC 1 cut(s) 784
Sse9I AATT 3 cut(s) 13, 602, 833
SseBI AGGCCT 1 cut(s) 685
SsiI CCGC 3 cut(s) 239, 303, 778
SspI AATATT 1 cut(s) 577
SspMI CTAG 1 cut(s) 164
SstI GAGCTC 1 cut(s) 405
StuI AGGCCT 1 cut(s) 685
StyD4I CCNGG 2 cut(s) 78, 414
StyI CCWWGG 2 cut(s) 372, 797
TaaI ACNGT 1 cut(s) 703
TaiI ACGT 3 cut(s) 219, 282, 350
TaqI TCGA 4 cut(s) 101, 344, 613, 666
TasI AATT 3 cut(s) 13, 602, 833
TatI WGTACW 2 cut(s) 255, 508
TauI GCSGC 1 cut(s) 241
TscAI CASTG 2 cut(s) 331, 541
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 3 cut(s) 187, 261, 569
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 5 cut(s) 350, 509, 555, 744, 846
TspRI CASTG 2 cut(s) 331, 541
VpaK11BI GGWCC 1 cut(s) 784
XapI RAATTY 1 cut(s) 602
XcmI CCANNNNNNNNNTGG 2 cut(s) 62, 870
XspI CTAG 1 cut(s) 164
ZraI GACGTC 1 cut(s) 280
ZrmI AGTACT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.