Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007598

Physical Location & Seq

Genomic Coordinates Reverse (-)

540069 .. 542054

Gene Structure 1986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026102

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCTGCTGATGACTCATCCGAATTCCAGATAGGAACCCACGTGGAGGTCACGAGCCCAGTCCACTCCATGCGCGGCTCGCTTTTCCCGGCCAAAATAGTCGCCGCCTCCGCCGATCGCGCCAAATTCACCGTCGAATACGACCGATTCAAGACCAAGCTCTACCGCAATGTCACAGGAAAAAAGTCGCTGCGGGACGAGTTCCACGTGGCGCTCCTCAGGCCGCCGCAGCCGCGGGAAGAGGGCTACGCCTTCAAGCGAAACGACGCCGTCGACGCTTTCATGGCCGGCGGGTGGTGGGAGGGAGTGATCACTGAGGAGCTGGGCGGCGCGCGTTTCGAGGTGTTTTTTAGGTTTGTGAAGCAGAGAGTTGAGTTTGAGGCGGATGAGTTGAGGCTTCATAGGGAGTGGGTCAGAGGGGCTTGGGTTCCTCCTCTGAGAGAAGAAGAGAGGGATGTGTTAAATACCAAGGACGAAAAGGCACAGATGAAGGAAGAAATTGGAGAAGGGACAGAAGTTGAGGTTTCCAATGATGAGGATGGATTTCAAGGCTCCTGGTTTGCGGCAAGCGTTGTCCAAGTAGTGGGGAAGGACAGATTTCTCATTCAGTATAAGAGCTTGAAAACGGATGATGGTAAAGAGTTATTAACAGAAGAGATTGATGCACAACACATAAGGCCTTGTCCACCTGAAACTGTTATGGTTGATTGTTACAGTATGAATGAAGAGGTTGAAGCTTACTGGAATGATGGATGGTGGGAAGGTAAGATATGTAAGGTGCTGCTTGGGGGAAGGTACAAAGTTTACTTCGAGGGTACTGACGATAAAATGGTGTTTGACCACTCTGATTTAAGGCCACGCCAAGTTTGGATAGATCGAACTTGGGTTATGGCTTCTCAGGCACTCATGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet

Protein Analysis

305

Amino Acids

35.17

Weight (kDa)

5.0

Isoelectric Point (pI)

32.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	12 - 78	1.5e-06	Agenet domain
Agenet	PF05641	170 - 230	4e-21	Agenet domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09320
fragaria_vesca	FvH4_7g33450 FvH4_7g33450
malus_domestica	MD01G1232500.v1.1 MD07G1304600.v1.1 MD07G1304800.v1.1
prunus_persica	Prupe.2G323100_v2.0.a1
pyrus_communis	pycom01g24100 pycom07g27740 pycom07g27770
rosa_chinensis	RchiOBHm_Chr1g0383531
rosa_laevigata	RLG00000009721 RLG00000026102
rosa_multiflora	Rmu_sc0000255.1_g000047 Rmu_sc0012471.1_g000016
rosa_roxburghii	Rroxscaffold_4G00277300
rosa_rugosa	Rorug01G0441700 Rorug01G0441800
rosa_samantha	Rh1AG467300 Rh1BG424900 Rh1CG437600 Rh1DG457700 Rh7BG260300
rosa_wichuraiana	Rw1G040510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	583
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	5 cut(s)	75, 120, 235, 332, 334
AcoI	YGGCCR	2 cut(s)	90, 285
AcsI	RAATTY	2 cut(s)	23, 125
AcvI	CACGTG	2 cut(s)	43, 208
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	2 cut(s)	797, 817
AfiI	CCNNNNNNNGG	3 cut(s)	46, 294, 583
AgsI	TTSAA	5 cut(s)	151, 256, 548, 622, 734
AjnI	CCWGG	1 cut(s)	554
AluBI	AGCT	4 cut(s)	160, 322, 618, 737
AluI	AGCT	4 cut(s)	160, 322, 618, 737
AoxI	GGCC	5 cut(s)	90, 221, 285, 677, 854
ApeKI	GCWGC	4 cut(s)	5, 190, 229, 781
ApoI	RAATTY	2 cut(s)	23, 125
ArsI	GACNNNNNNTTYG	2 cut(s)	117, 149
AspLEI	GCGC	5 cut(s)	75, 122, 214, 332, 334
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	121
AxyI	CCTNAGG	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	59
BauI	CACGAG	1 cut(s)	52
BbrPI	CACGTG	2 cut(s)	43, 208
BbvI	GCAGC	3 cut(s)	177, 241, 768
BccI	CCATC	4 cut(s)	533, 626, 743, 747
BceAI	ACGGC	1 cut(s)	254
BciT130I	CCWGG	1 cut(s)	556
BclI	TGATCA	1 cut(s)	309
BcnI	CCSGG	1 cut(s)	89
BfoI	RGCGCY	1 cut(s)	215
Bme1390I	CCNGG	2 cut(s)	89, 556
BmiI	GGNNCC	3 cut(s)	37, 429, 553
BmrFI	CCNGG	2 cut(s)	89, 556
BmrI	ACTGGG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	652
BmuI	ACTGGG	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	89
BsaAI	YACGTR	2 cut(s)	43, 208
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	233, 468
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 294, 583
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	2 cut(s)	59, 746
Bse21I	CCTNAGG	1 cut(s)	218
Bse3DI	GCAATG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	556
BseDI	CCNNGG	2 cut(s)	233, 468
BseGI	GGATG	6 cut(s)	17, 391, 460, 544, 634, 758
BseLI	CCNNNNNNNGG	3 cut(s)	46, 294, 583
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	4 cut(s)	232, 306, 428, 911
BseNI	ACTGG	2 cut(s)	59, 746
BsePI	GCGCGC	1 cut(s)	330
BseRI	GAGGAG	3 cut(s)	206, 332, 423
BseXI	GCAGC	3 cut(s)	177, 241, 768
BseYI	CCCAGC	1 cut(s)	322
Bsh1236I	CGCG	5 cut(s)	75, 120, 235, 332, 334
Bsh1285I	CGRYCG	2 cut(s)	118, 145
BshFI	GGCC	5 cut(s)	92, 223, 287, 679, 856
BsiEI	CGRYCG	2 cut(s)	118, 145
BsiSI	CCGG	2 cut(s)	89, 288
BslFI	GGGAC	2 cut(s)	209, 523
BslI	CCNNNNNNNGG	3 cut(s)	46, 294, 583
BsmFI	GGGAC	2 cut(s)	209, 523
BsnI	GGCC	5 cut(s)	92, 223, 287, 679, 856
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	3 cut(s)	115, 309, 874
BspANI	GGCC	5 cut(s)	92, 223, 287, 679, 856
BspCNI	CTCAG	4 cut(s)	231, 307, 429, 910
BspFNI	CGCG	5 cut(s)	75, 120, 235, 332, 334
BspLI	GGNNCC	3 cut(s)	37, 429, 553
BsrDI	GCAATG	1 cut(s)	175
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	2 cut(s)	59, 746
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	2 cut(s)	233, 468
BssHII	GCGCGC	1 cut(s)	330
BssMI	GATC	3 cut(s)	115, 309, 874
BssNI	GRCGYC	1 cut(s)	267
BssSI	CACGAG	1 cut(s)	52
BssT1I	CCWWGG	1 cut(s)	468
Bst2BI	CACGAG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	556
Bst4CI	ACNGT	3 cut(s)	133, 697, 716
Bst6I	CTCTTC	4 cut(s)	234, 441, 648, 720
BstACI	GRCGYC	1 cut(s)	267
BstBAI	YACGTR	2 cut(s)	43, 208
BstC8I	GCNNGC	4 cut(s)	80, 289, 332, 568
BstDEI	CTNAG	4 cut(s)	218, 315, 437, 897
BstDSI	CCRYGG	1 cut(s)	233
BstF5I	GGATG	6 cut(s)	17, 391, 460, 544, 634, 758
BstFNI	CGCG	5 cut(s)	75, 120, 235, 332, 334
BstH2I	RGCGCY	1 cut(s)	215
BstHHI	GCGC	5 cut(s)	75, 122, 214, 332, 334
BstKTI	GATC	3 cut(s)	118, 312, 877
BstMBI	GATC	3 cut(s)	115, 309, 874
BstMCI	CGRYCG	2 cut(s)	118, 145
BstMWI	GCNNNNNNNGC	9 cut(s)	79, 110, 119, 220, 229, 232, 275, 284, 899
BstNI	CCWGG	1 cut(s)	556
BstSCI	CCNGG	2 cut(s)	87, 554
BstUI	CGCG	5 cut(s)	75, 120, 235, 332, 334
BstV1I	GCAGC	3 cut(s)	177, 241, 768
Bsu36I	CCTNAGG	1 cut(s)	218
BsuRI	GGCC	5 cut(s)	92, 223, 287, 679, 856
BtgI	CCRYGG	1 cut(s)	233
BtsCI	GGATG	6 cut(s)	17, 391, 460, 544, 634, 758
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	4 cut(s)	80, 289, 332, 568
CfoI	GCGC	5 cut(s)	75, 122, 214, 332, 334
Cfr10I	RCCGGY	1 cut(s)	287
Cfr42I	CCGCGG	1 cut(s)	236
CseI	GACGC	2 cut(s)	275, 284
Csp6I	GTAC	2 cut(s)	796, 816
CviAII	CATG	3 cut(s)	70, 283, 907
CviQI	GTAC	2 cut(s)	796, 816
DdeI	CTNAG	4 cut(s)	218, 315, 437, 897
DpnI	GATC	3 cut(s)	117, 311, 876
DpnII	GATC	3 cut(s)	115, 309, 874
EaeI	YGGCCR	2 cut(s)	90, 285
Eam1104I	CTCTTC	4 cut(s)	234, 441, 648, 720
EarI	CTCTTC	4 cut(s)	234, 441, 648, 720
EciI	GGCGGA	2 cut(s)	100, 398
Eco130I	CCWWGG	1 cut(s)	468
Eco147I	AGGCCT	1 cut(s)	679
Eco24I	GRGCYC	1 cut(s)	59
Eco72I	CACGTG	2 cut(s)	43, 208
Eco81I	CCTNAGG	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	554
EcoT14I	CCWWGG	1 cut(s)	468
EcoT38I	GRGCYC	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	3 cut(s)	73, 286, 910
FaqI	GGGAC	2 cut(s)	209, 523
FatI	CATG	3 cut(s)	69, 282, 906
FauI	CCCGC	3 cut(s)	186, 228, 284
FbaI	TGATCA	1 cut(s)	309
FblI	GTMKAC	1 cut(s)	273
FokI	GGATG	6 cut(s)	4, 398, 467, 551, 641, 765
FriOI	GRGCYC	1 cut(s)	59
GlaI	GCGC	5 cut(s)	74, 121, 213, 331, 333
GsaI	CCCAGC	1 cut(s)	326
HaeII	RGCGCY	1 cut(s)	215
HaeIII	GGCC	5 cut(s)	92, 223, 287, 679, 856
HapII	CCGG	2 cut(s)	89, 288
HgaI	GACGC	2 cut(s)	275, 284
HhaI	GCGC	5 cut(s)	75, 122, 214, 332, 334
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	3 cut(s)	73, 286, 910
Hin6I	GCGC	5 cut(s)	73, 120, 212, 330, 332
HinP1I	GCGC	5 cut(s)	73, 120, 212, 330, 332
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HindIII	AAGCTT	1 cut(s)	735
HinfI	GANTC	2 cut(s)	14, 147
HpaII	CCGG	2 cut(s)	89, 288
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	4 cut(s)	64, 274, 686, 805
Hpy188I	TCNGA	4 cut(s)	22, 416, 438, 847
Hpy188III	TCNNGA	3 cut(s)	28, 52, 151
Hpy8I	GTNNAC	4 cut(s)	64, 274, 686, 805
Hpy99I	CGWCG	4 cut(s)	137, 269, 275, 278
HpyAV	CCTTC	6 cut(s)	262, 484, 500, 583, 755, 786
HpyCH4III	ACNGT	3 cut(s)	133, 697, 716
HpyCH4IV	ACGT	2 cut(s)	42, 207
HpyCH4V	TGCA	2 cut(s)	665, 910
HpyF10VI	GCNNNNNNNGC	9 cut(s)	79, 110, 119, 220, 229, 232, 275, 284, 899
HpyF3I	CTNAG	4 cut(s)	218, 315, 437, 897
HpySE526I	ACGT	2 cut(s)	42, 207
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	3 cut(s)	73, 286, 910
HspAI	GCGC	5 cut(s)	73, 120, 212, 330, 332
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Ksp22I	TGATCA	1 cut(s)	309
KspI	CCGCGG	1 cut(s)	236
Kzo9I	GATC	3 cut(s)	115, 309, 874
LmnI	GCTCC	3 cut(s)	219, 319, 557
Lsp1109I	GCAGC	3 cut(s)	177, 241, 768
LweI	GCATC	1 cut(s)	652
MaeII	ACGT	2 cut(s)	42, 207
MaeIII	GTNAC	3 cut(s)	49, 172, 710
MalI	GATC	3 cut(s)	117, 311, 876
MboI	GATC	3 cut(s)	115, 309, 874
MboII	GAAGA	6 cut(s)	251, 455, 458, 506, 665, 737
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	3 cut(s)	23, 125, 498
MlyI	GAGTC	1 cut(s)	8
MroNI	GCCGGC	1 cut(s)	287
MseI	TTAA	3 cut(s)	461, 647, 851
MspA1I	CMGCKG	1 cut(s)	235
MspI	CCGG	2 cut(s)	89, 288
MspR9I	CCNGG	2 cut(s)	89, 556
MvaI	CCWGG	1 cut(s)	556
MvnI	CGCG	5 cut(s)	75, 120, 235, 332, 334
MwoI	GCNNNNNNNGC	9 cut(s)	79, 110, 119, 220, 229, 232, 275, 284, 899
NaeI	GCCGGC	1 cut(s)	289
NciI	CCSGG	1 cut(s)	89
NdeII	GATC	3 cut(s)	115, 309, 874
NgoMIV	GCCGGC	1 cut(s)	287
NlaIII	CATG	3 cut(s)	73, 286, 910
NlaIV	GGNNCC	3 cut(s)	37, 429, 553
NmuCI	GTSAC	2 cut(s)	49, 172
PauI	GCGCGC	1 cut(s)	330
PceI	AGGCCT	1 cut(s)	679
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 270
PdiI	GCCGGC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	147
PflFI	GACNNNGTC	1 cut(s)	269
PflMI	CCANNNNNTGG	1 cut(s)	583
Ple19I	CGATCG	1 cut(s)	118
PleI	GAGTC	1 cut(s)	8
PmaCI	CACGTG	2 cut(s)	43, 208
PmlI	CACGTG	2 cut(s)	43, 208
PpsI	GAGTC	1 cut(s)	8
Ppu21I	YACGTR	2 cut(s)	43, 208
Psp6I	CCWGG	1 cut(s)	554
PspCI	CACGTG	2 cut(s)	43, 208
PspFI	CCCAGC	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	554
PspN4I	GGNNCC	3 cut(s)	37, 429, 553
PsyI	GACNNNGTC	1 cut(s)	269
PteI	GCGCGC	1 cut(s)	330
PvuI	CGATCG	1 cut(s)	118
RsaI	GTAC	2 cut(s)	797, 817
RsaNI	GTAC	2 cut(s)	796, 816
SacII	CCGCGG	1 cut(s)	236
SalI	GTCGAC	1 cut(s)	272
SaqAI	TTAA	3 cut(s)	461, 647, 851
Sau3AI	GATC	3 cut(s)	115, 309, 874
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	2 cut(s)	89, 556
SduI	GDGCHC	1 cut(s)	59
SfaNI	GCATC	1 cut(s)	652
Sfr303I	CCGCGG	1 cut(s)	236
SgrBI	CCGCGG	1 cut(s)	236
SgrDI	CGTCGACG	1 cut(s)	272
Sse9I	AATT	3 cut(s)	23, 125, 498
SseBI	AGGCCT	1 cut(s)	679
StuI	AGGCCT	1 cut(s)	679
StyD4I	CCNGG	2 cut(s)	87, 554
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	3 cut(s)	133, 697, 716
TaiI	ACGT	2 cut(s)	45, 210
TaqI	TCGA	5 cut(s)	135, 273, 339, 810, 877
TaqII	GACCGA	1 cut(s)	159
TasI	AATT	3 cut(s)	23, 125, 498
TauI	GCSGC	7 cut(s)	78, 107, 226, 229, 235, 330, 566
TfiI	GAWTC	1 cut(s)	147
Tru1I	TTAA	3 cut(s)	461, 647, 851
Tru9I	TTAA	3 cut(s)	461, 647, 851
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	2 cut(s)	49, 172
TseI	GCWGC	4 cut(s)	5, 190, 229, 781
Tsp45I	GTSAC	2 cut(s)	49, 172
TspDTI	ATGAA	5 cut(s)	271, 389, 503, 734, 738
TspGWI	ACGGA	1 cut(s)	641
TspRI	CASTG	1 cut(s)	319
Tth111I	GACNNNGTC	1 cut(s)	269
Van91I	CCANNNNNTGG	1 cut(s)	583
XapI	RAATTY	2 cut(s)	23, 125
XcmI	CCANNNNNNNNNTGG	1 cut(s)	864
XmiI	GTMKAC	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.