RLG00000009721

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0007598
Physical Location & Seq
Forward (+)
56903187 .. 56903651
465 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009721

Sequence Viewer

Length: 348 bp
ATGCTGGACGAGTTCCACGTGGGGCTCTTCAGGCCGCCGCCGCCTCGGGAAGAGGGCTACACCTTCAAGAGAAACGACGGCGTCGACGCTTTCATGGCCGGCAGGTGGTGGGAGGGAGTGATCACTGAGGAGCTGGGTGGCGCGCGTTTCGAGGTGTTTTTTAGGTTTGTGAAGCAGAGAGTTGAGTTTGAGGCGGATGAGCTGAGGCTTCATAGGGAGTGGGTCAGAGGGGCTTGGGTTCCTCCTCTGAGAGAAGAACATAGGGGGAAGGATGAAGATAATGAGGGAATTGATTATTGTTGTGAGGTGATTTCTAATTCTAGTTGCATTTGTTTAGCTATTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

116

Amino Acids

13.52

Weight (kDa)

4.85

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 93
Acc36I ACCTGC 1 cut(s) 93
AccI GTMKAC 1 cut(s) 84
AccII CGCG 2 cut(s) 143, 145
AciI CCGC 4 cut(s) 35, 38, 41, 194
AcoI YGGCCR 1 cut(s) 96
AcuI CTGAAG 1 cut(s) 13
AcvI CACGTG 1 cut(s) 19
AcyI GRCGYC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 105
AgsI TTSAA 1 cut(s) 67
AluBI AGCT 3 cut(s) 133, 202, 338
AluI AGCT 3 cut(s) 133, 202, 338
Ama87I CYCGRG 1 cut(s) 45
AoxI GGCC 2 cut(s) 32, 96
AspLEI GCGC 2 cut(s) 143, 145
AsuHPI GGTGA 1 cut(s) 319
AvaI CYCGRG 1 cut(s) 45
BanII GRGCYC 1 cut(s) 27
BbrPI CACGTG 1 cut(s) 19
BbvCI CCTCAGC 1 cut(s) 203
BceAI ACGGC 1 cut(s) 94
BclI TGATCA 1 cut(s) 120
BfaI CTAG 1 cut(s) 321
BfuAI ACCTGC 1 cut(s) 93
BisI GCNGC 3 cut(s) 35, 38, 41
BlsI GCNGC 3 cut(s) 36, 39, 42
BmeT110I CYCGRG 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 240
Bpu10I CCTNAGC 1 cut(s) 203
BsaAI YACGTR 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 44
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 44
BseGI GGATG 2 cut(s) 202, 277
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMII CTCAG 3 cut(s) 117, 194, 239
BsePI GCGCGC 1 cut(s) 141
BseRI GAGGAG 2 cut(s) 143, 234
BseYI CCCAGC 1 cut(s) 133
Bsh1236I CGCG 2 cut(s) 143, 145
BshFI GGCC 2 cut(s) 34, 98
BsiHKCI CYCGRG 1 cut(s) 45
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 105
BsnI GGCC 2 cut(s) 34, 98
BsoBI CYCGRG 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 4 cut(s) 35, 38, 41, 194
BspANI GGCC 2 cut(s) 34, 98
BspCNI CTCAG 3 cut(s) 118, 195, 240
BspFNI CGCG 2 cut(s) 143, 145
BspLI GGNNCC 1 cut(s) 240
BspMI ACCTGC 1 cut(s) 93
BspQI GCTCTTC 1 cut(s) 32
BsrFI RCCGGY 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 44
BssHII GCGCGC 1 cut(s) 141
BssMI GATC 1 cut(s) 120
BssNI GRCGYC 1 cut(s) 81
Bst6I CTCTTC 2 cut(s) 32, 45
BstACI GRCGYC 1 cut(s) 81
BstBAI YACGTR 1 cut(s) 19
BstC8I GCNNGC 2 cut(s) 100, 143
BstDEI CTNAG 3 cut(s) 126, 203, 248
BstF5I GGATG 2 cut(s) 202, 277
BstFNI CGCG 2 cut(s) 143, 145
BstHHI GCGC 2 cut(s) 143, 145
BstKTI GATC 1 cut(s) 123
BstMBI GATC 1 cut(s) 120
BstMWI GCNNNNNNNGC 3 cut(s) 31, 40, 95
BstUI CGCG 2 cut(s) 143, 145
BsuRI GGCC 2 cut(s) 34, 98
BtsCI GGATG 2 cut(s) 202, 277
BtsIMutI CAGTG 1 cut(s) 123
BveI ACCTGC 1 cut(s) 93
Cac8I GCNNGC 2 cut(s) 100, 143
CfoI GCGC 2 cut(s) 143, 145
Cfr10I RCCGGY 1 cut(s) 98
CseI GACGC 2 cut(s) 70, 95
CviAII CATG 1 cut(s) 94
CviJI RGCY 9 cut(s) 25, 34, 57, 98, 133, 202, 208, 233, 338
CviKI_1 RGCY 9 cut(s) 25, 34, 57, 98, 133, 202, 208, 233, 338
DdeI CTNAG 3 cut(s) 126, 203, 248
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 2 cut(s) 32, 45
EarI CTCTTC 2 cut(s) 32, 45
EciI GGCGGA 1 cut(s) 209
Eco24I GRGCYC 1 cut(s) 27
Eco57I CTGAAG 1 cut(s) 13
Eco72I CACGTG 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 1 cut(s) 97
FaiI YATR 3 cut(s) 95, 213, 261
FatI CATG 1 cut(s) 93
FbaI TGATCA 1 cut(s) 120
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 3 cut(s) 35, 38, 41
FokI GGATG 2 cut(s) 209, 284
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 3 cut(s) 35, 38, 41
FspBI CTAG 1 cut(s) 321
GlaI GCGC 2 cut(s) 142, 144
GluI GCNGC 3 cut(s) 35, 38, 41
GsaI CCCAGC 1 cut(s) 137
HaeIII GGCC 2 cut(s) 34, 98
HapII CCGG 1 cut(s) 99
HgaI GACGC 2 cut(s) 70, 95
HhaI GCGC 2 cut(s) 143, 145
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 2 cut(s) 141, 143
HinP1I GCGC 2 cut(s) 141, 143
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HpaII CCGG 1 cut(s) 99
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 227, 249
Hpy188III TCNNGA 2 cut(s) 47, 67
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 3 cut(s) 80, 86, 89
HpyAV CCTTC 2 cut(s) 73, 262
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 327
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 40, 95
HpyF3I CTNAG 3 cut(s) 126, 203, 248
HpySE526I ACGT 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 2 cut(s) 141, 143
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 1 cut(s) 120
LguI GCTCTTC 1 cut(s) 32
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 4 cut(s) 16, 88, 112, 119
MaeI CTAG 1 cut(s) 321
MaeII ACGT 1 cut(s) 18
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 4 cut(s) 19, 62, 266, 287
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 2 cut(s) 288, 316
MroNI GCCGGC 1 cut(s) 98
MspI CCGG 1 cut(s) 99
MvnI CGCG 2 cut(s) 143, 145
MwoI GCNNNNNNNGC 3 cut(s) 31, 40, 95
NaeI GCCGGC 1 cut(s) 100
NdeII GATC 1 cut(s) 120
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 240
PaqCI CACCTGC 1 cut(s) 93
PauI GCGCGC 1 cut(s) 141
PciSI GCTCTTC 1 cut(s) 32
PcsI WCGNNNNNNNCGW 2 cut(s) 15, 81
PdiI GCCGGC 1 cut(s) 100
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 3 cut(s) 36, 39, 42
PmaCI CACGTG 1 cut(s) 19
PmlI CACGTG 1 cut(s) 19
Ppu21I YACGTR 1 cut(s) 19
PspCI CACGTG 1 cut(s) 19
PspFI CCCAGC 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 240
PsyI GACNNNGTC 1 cut(s) 80
PteI GCGCGC 1 cut(s) 141
SalI GTCGAC 1 cut(s) 83
SapI GCTCTTC 1 cut(s) 32
SatI GCNGC 3 cut(s) 35, 38, 41
Sau3AI GATC 1 cut(s) 120
SduI GDGCHC 1 cut(s) 27
SetI ASST 9 cut(s) 21, 65, 107, 135, 156, 167, 204, 309, 340
SgrDI CGTCGACG 1 cut(s) 83
Sse9I AATT 2 cut(s) 288, 316
SsiI CCGC 4 cut(s) 35, 38, 41, 194
SspMI CTAG 1 cut(s) 321
TaiI ACGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 84, 150
TasI AATT 2 cut(s) 288, 316
TauI GCSGC 3 cut(s) 37, 40, 43
TscAI CASTG 1 cut(s) 130
TspDTI ATGAA 3 cut(s) 82, 200, 288
TspRI CASTG 1 cut(s) 130
Tth111I GACNNNGTC 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.