Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004061

Physical Location & Seq

Genomic Coordinates Reverse (-)

3101149 .. 3103677

Gene Structure 2529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G09575.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTGGTCAATGGGTTTGATAAGGCGTACGGCAATGTCCAATGCCATTAGAGCTTCTTCGCAAAGGACATGGCTTGGTCACGGTGGATTAAGAAGCTGCGTCACCGTCAAAACACCGTCGGAGGATGAAGAGGAGAAGAAGAAAGAGATAACTATAGCGGAAGCGAAGAAGCTAATGAGGCTTGTGAATGTTGAAGACATGAAGAAGAAGCTTGTTGGTGTGGCTGATAGAGATGTTGTCTCTTACTCTACACTTTTAGAAGCTTCTCAAGGAATGGGTATCGCTAGATCTCCCGATGAAGCTCATGTCTTTGCTCGTGTTCTTGACGATGCTGGCGTTGTCTTGATCTTTCGTGATAAAGTCTATCTTCACCCAGACAAGGTGGTGGATCTGATTAGAAGAGCGATGCCTTTGGACCAGAATCCAGAGGAAGATCAAATCAAGGAAGAATTCAACAAATTGAGAATCATGAAAGAAGAGATTGATGTTTTGGCTCATAGACAAGTGAGGAAGATTCTTTGGTGTGGTTTAGCTACTTCGATGGTTCAAATTGGACTCTTTTTTAGATTAACTTTCTGGGAATTCTCATGGGATGTGATGGAACCAATCACTTTCTTCGCTACAGCGACTGGAATCATTGTGGGTTATGCTTATTTCTTGATGACTTCGAGAGATCCGACATATCAGGATTTCATGAAGAGGCTCTTCTTGTCGAGACAGAGGAAGTTGTTGAAGAGTCATAAGTTTGACTGCGAGAGGTTTAAGGAATTGGAGAGGTTATTTAAAATGACGTCGTCTTGTCATGCAGCTGCGTCTATAAGGAATCGTGTTGGATTAGAACTTGATCTCGAGGATGCTTTGCAGAGTCGCAGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015267 GO:0015291 GO:0015292 GO:0015318 GO:0022803 GO:0022804 GO:0022838 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04020 ko04218 ko04621 map04020 map04218 map04621

Pfam Domains

Protein Families

MCU

Protein Analysis

292

Amino Acids

33.8

Weight (kDa)

8.95

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCU	PF04678	99 - 257	2.8e-54	Mitochondrial calcium uniporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09575 AT1G09575 AT1G57610 AT1G57610 AT1G57610 AT1G57610
fragaria_vesca	FvH4_3g41270 FvH4_3g41270
malus_domestica	MD03G1046100.v1.1 MD11G1048400.v1.1
prunus_persica	Prupe.6G037400_v2.0.a1 Prupe.6G037400_v2.0.a1 Prupe.6G037400_v2.0.a1
pyrus_communis	pycom03g03630
rosa_chinensis	RchiOBHm_Chr5g0074071
rosa_laevigata	RLG00000036451
rosa_multiflora	Rmu_co8305125.1_g000001 Rmu_sc0009296.1_g000014 Rmu_sc0011497.1_g000001 Rmu_sc0031541.1_g000001 Rmu_sc0036241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007310 Rroxscaffold_6G00421610
rosa_rugosa	Rorug05G0429000
rosa_samantha	Rh5AG486600 Rh5BG506900 Rh5CG530400 Rh5DG519300 Rh6BG292500 Rh7AG390400 Rh7BG274100 Rh7CG409400
rosa_wichuraiana	Rw5G045160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	794
AciI	CCGC	1 cut(s)	158
AclWI	GGATC	2 cut(s)	396, 668
AcsI	RAATTY	2 cut(s)	449, 581
AcyI	GRCGYC	1 cut(s)	791
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	4 cut(s)	194, 454, 548, 733
AluBI	AGCT	8 cut(s)	53, 96, 172, 211, 263, 302, 533, 809
AluI	AGCT	8 cut(s)	53, 96, 172, 211, 263, 302, 533, 809
Alw26I	GTCTC	2 cut(s)	244, 709
AlwI	GGATC	2 cut(s)	396, 668
AlwNI	CAGNNNCTG	2 cut(s)	629, 876
Ama87I	CYCGRG	1 cut(s)	848
ApeKI	GCWGC	3 cut(s)	96, 806, 809
ApoI	RAATTY	2 cut(s)	449, 581
AspS9I	GGNCC	1 cut(s)	415
AsuHPI	GGTGA	2 cut(s)	94, 362
AvaI	CYCGRG	1 cut(s)	848
AvaII	GGWCC	1 cut(s)	415
BauI	CACGAG	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	201
BbvI	GCAGC	3 cut(s)	83, 796, 818
BccI	CCATC	2 cut(s)	535, 592
BceAI	ACGGC	1 cut(s)	45
BcoDI	GTCTC	2 cut(s)	244, 709
BfaI	CTAG	1 cut(s)	285
BfmI	CTRYAG	2 cut(s)	153, 621
BglII	AGATCT	1 cut(s)	287
BisI	GCNGC	3 cut(s)	97, 807, 810
BlsI	GCNGC	3 cut(s)	98, 808, 811
Bme18I	GGWCC	1 cut(s)	415
BmeT110I	CYCGRG	1 cut(s)	848
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	1 cut(s)	603
BmsI	GCATC	3 cut(s)	319, 396, 844
BpiI	GAAGAC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	252
BsaHI	GRCGYC	1 cut(s)	791
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse1I	ACTGG	1 cut(s)	634
Bse3DI	GCAATG	1 cut(s)	39
BseGI	GGATG	3 cut(s)	130, 598, 859
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMI	GCAATG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	634
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	3 cut(s)	83, 796, 818
BsiHKCI	CYCGRG	1 cut(s)	848
BsiWI	CGTACG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmAI	GTCTC	2 cut(s)	244, 709
BsoBI	CYCGRG	1 cut(s)	848
Bsp143I	GATC	6 cut(s)	287, 345, 388, 433, 673, 844
BspACI	CCGC	1 cut(s)	158
BspHI	TCATGA	2 cut(s)	468, 693
BspLI	GGNNCC	1 cut(s)	603
BspPI	GGATC	2 cut(s)	396, 668
BspQI	GCTCTTC	2 cut(s)	394, 710
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	634
BssMI	GATC	6 cut(s)	287, 345, 388, 433, 673, 844
BssNI	GRCGYC	1 cut(s)	791
BssSI	CACGAG	1 cut(s)	315
Bst2BI	CACGAG	1 cut(s)	315
Bst4CI	ACNGT	3 cut(s)	83, 106, 117
Bst6I	CTCTTC	6 cut(s)	123, 394, 471, 692, 710, 728
BstACI	GRCGYC	1 cut(s)	791
BstC8I	GCNNGC	1 cut(s)	334
BstF5I	GGATG	3 cut(s)	130, 598, 859
BstKTI	GATC	6 cut(s)	290, 348, 391, 436, 676, 847
BstMAI	GTCTC	2 cut(s)	244, 709
BstMBI	GATC	6 cut(s)	287, 345, 388, 433, 673, 844
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 178
BstSFI	CTRYAG	2 cut(s)	153, 621
BstV1I	GCAGC	3 cut(s)	83, 796, 818
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	3 cut(s)	287, 388, 673
BstYI	RGATCY	3 cut(s)	287, 388, 673
BtgZI	GCGATG	1 cut(s)	419
BtsCI	GGATG	3 cut(s)	130, 598, 859
Cac8I	GCNNGC	1 cut(s)	334
CaiI	CAGNNNCTG	2 cut(s)	629, 876
CciI	TCATGA	2 cut(s)	468, 693
Cfr13I	GGNCC	1 cut(s)	415
CseI	GACGC	2 cut(s)	88, 801
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	7 cut(s)	69, 199, 305, 469, 588, 694, 803
CviQI	GTAC	1 cut(s)	27
DpnI	GATC	6 cut(s)	289, 347, 390, 435, 675, 846
DpnII	GATC	6 cut(s)	287, 345, 388, 433, 673, 844
DraI	TTTAAA	1 cut(s)	784
Eam1104I	CTCTTC	6 cut(s)	123, 394, 471, 692, 710, 728
EarI	CTCTTC	6 cut(s)	123, 394, 471, 692, 710, 728
Eco47I	GGWCC	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	848
EcoRI	GAATTC	2 cut(s)	449, 581
FaeI	CATG	7 cut(s)	72, 202, 308, 472, 591, 697, 806
FalI	AAGNNNNNCTT	4 cut(s)	351, 383, 689, 721
FatI	CATG	7 cut(s)	68, 198, 304, 468, 587, 693, 802
Fnu4HI	GCNGC	3 cut(s)	97, 807, 810
FokI	GGATG	3 cut(s)	137, 605, 866
Fsp4HI	GCNGC	3 cut(s)	97, 807, 810
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	3 cut(s)	97, 807, 810
HgaI	GACGC	2 cut(s)	88, 801
Hin1I	GRCGYC	1 cut(s)	791
Hin1II	CATG	7 cut(s)	72, 202, 308, 472, 591, 697, 806
HindIII	AAGCTT	2 cut(s)	209, 261
HinfI	GANTC	8 cut(s)	421, 465, 514, 555, 633, 736, 823, 865
HphI	GGTGA	2 cut(s)	94, 362
Hpy188I	TCNGA	3 cut(s)	121, 393, 678
Hpy99I	CGWCG	2 cut(s)	121, 796
HpyCH4III	ACNGT	3 cut(s)	83, 106, 117
HpyCH4IV	ACGT	1 cut(s)	791
HpyCH4V	TGCA	2 cut(s)	806, 862
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 178
HpySE526I	ACGT	1 cut(s)	791
Hsp92I	GRCGYC	1 cut(s)	791
Hsp92II	CATG	7 cut(s)	72, 202, 308, 472, 591, 697, 806
Kzo9I	GATC	6 cut(s)	287, 345, 388, 433, 673, 844
LguI	GCTCTTC	2 cut(s)	394, 710
LpnPI	CCDG	8 cut(s)	318, 387, 431, 438, 562, 615, 671, 856
Lsp1109I	GCAGC	3 cut(s)	83, 796, 818
LweI	GCATC	3 cut(s)	319, 396, 844
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	1 cut(s)	791
MaeIII	GTNAC	2 cut(s)	77, 100
MalI	GATC	6 cut(s)	289, 347, 390, 435, 675, 846
MboI	GATC	6 cut(s)	287, 345, 388, 433, 673, 844
MflI	RGATCY	3 cut(s)	287, 388, 673
MluCI	AATT	5 cut(s)	449, 458, 549, 581, 767
MlyI	GAGTC	3 cut(s)	549, 745, 874
MmeI	TCCRAC	3 cut(s)	99, 701, 811
MseI	TTAA	4 cut(s)	89, 569, 762, 783
MspA1I	CMGCKG	1 cut(s)	809
MwoI	GCNNNNNNNGC	2 cut(s)	50, 178
NdeII	GATC	6 cut(s)	287, 345, 388, 433, 673, 844
NlaIII	CATG	7 cut(s)	72, 202, 308, 472, 591, 697, 806
NlaIV	GGNNCC	1 cut(s)	603
NmuCI	GTSAC	2 cut(s)	77, 100
PaeR7I	CTCGAG	1 cut(s)	848
PagI	TCATGA	2 cut(s)	468, 693
PciSI	GCTCTTC	2 cut(s)	394, 710
PcsI	WCGNNNNNNNCGW	2 cut(s)	333, 674
PfeI	GAWTC	5 cut(s)	421, 465, 514, 633, 823
Pfl23II	CGTACG	1 cut(s)	26
PflFI	GACNNNGTC	1 cut(s)	793
PkrI	GCNGC	3 cut(s)	98, 808, 811
PleI	GAGTC	3 cut(s)	549, 744, 873
PpsI	GAGTC	3 cut(s)	549, 744, 873
PspLI	CGTACG	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	603
PspPI	GGNCC	1 cut(s)	415
PstNI	CAGNNNCTG	2 cut(s)	629, 876
PsuI	RGATCY	3 cut(s)	287, 388, 673
PsyI	GACNNNGTC	1 cut(s)	793
PvuII	CAGCTG	1 cut(s)	809
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SapI	GCTCTTC	2 cut(s)	394, 710
SaqAI	TTAA	4 cut(s)	89, 569, 762, 783
SatI	GCNGC	3 cut(s)	97, 807, 810
Sau3AI	GATC	6 cut(s)	287, 345, 388, 433, 673, 844
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	3 cut(s)	549, 745, 874
SfaNI	GCATC	3 cut(s)	319, 396, 844
SfcI	CTRYAG	2 cut(s)	153, 621
Sfr274I	CTCGAG	1 cut(s)	848
SinI	GGWCC	1 cut(s)	415
SlaI	CTCGAG	1 cut(s)	848
SmlI	CTYRAG	2 cut(s)	267, 848
SmoI	CTYRAG	2 cut(s)	267, 848
Sse9I	AATT	5 cut(s)	449, 458, 549, 581, 767
SsiI	CCGC	1 cut(s)	158
SspMI	CTAG	1 cut(s)	285
TaaI	ACNGT	3 cut(s)	83, 106, 117
TaiI	ACGT	1 cut(s)	794
TaqI	TCGA	4 cut(s)	539, 668, 713, 849
TasI	AATT	5 cut(s)	449, 458, 549, 581, 767
TfiI	GAWTC	5 cut(s)	421, 465, 514, 633, 823
Tru1I	TTAA	4 cut(s)	89, 569, 762, 783
Tru9I	TTAA	4 cut(s)	89, 569, 762, 783
TseFI	GTSAC	2 cut(s)	77, 100
TseI	GCWGC	3 cut(s)	96, 806, 809
Tsp45I	GTSAC	2 cut(s)	77, 100
TspDTI	ATGAA	6 cut(s)	141, 215, 312, 485, 682, 710
Tth111I	GACNNNGTC	1 cut(s)	793
VpaK11BI	GGWCC	1 cut(s)	415
XapI	RAATTY	2 cut(s)	449, 581
XhoI	CTCGAG	1 cut(s)	848
XspI	CTAG	1 cut(s)	285
ZraI	GACGTC	1 cut(s)	792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.