Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004061

Physical Location & Seq

Genomic Coordinates Forward (+)

4216932 .. 4219187

Gene Structure 2256 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1048400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGTGGAGATGGTGTAAGAGCAGTGGTGTGTTGGTGAGACAAATGGGGTTGGGGAAGCCCAACGGCCCCAACCCATGTTTTGGATTCAAGGGTTTTGCTAAACAAGAATGCGGGTTGTTGAATTTTCCTGCAACTTCGTCTTTGGCCCTGATTCCGAAGAGGAGAATGTCGTCTTCTGGTGATTTCAGCGGCGGAGTGGGAGGAGCAGCAGAGCTGAGCATAGGAGGAGAGACGATATCGTTTGCGGAGGCCAAGAGGCTGATGAGGCTGGTGAATGTGGAGGCTTTAAAGGCCCAGCTTGGGACAGAGGAGAAAGAGGCAATACCGTATTCTCATCTTCTGGAGGCGTGCCAGAGCATTGGGGTTGCCAGATCGCCGGAAGAGGCTGCTGCTTTTGCTCGGGTTCTCGACGAGGCCGGCGTCATCCTTTTGTTCCGGGACAAGGTCCTCCTGCATCCTAATAGGGTTGTGGAGCTAGTTCGAAAAGCAGTACCCCTTGCTTTGACTCCGGAAGATGACCCCTTGTGGGCGGAGTTAAAAAAGCTGCAAGAGAAGAAGGAAGAAATCGATGTGTTGGCACATAAGCAGGTCCGGCGCATTCTCTGGGCTGGTCTGGGGGTGCTCCTGACACAGCTCGGGCTCTTTTTCAGGCTAACATATTGGGACTTCTCATGGGACGTAGTGGAACCACTCGCCTACTTCACAACAACAGCTTGCATTGGCATAGGCTATGCCTACTTCTTGATCACGTCAAGAGATCCAACTTACCAAGATCTGATGAAGAGGCTCTTTCTCAGGAGGCAGAGGAAACTGATCGAGCGTCATAATTTTGATGTCGAAAAGTTCAAGGAGATCCAGAGAAAATGCGGCATACCTCTACACGCCAGTGCCTCGATTAAGAATCGTGTAGGCCTGGAAATAGAGCTCGACGACGCTTTACATAGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015267 GO:0015291 GO:0015292 GO:0015318 GO:0022803 GO:0022804 GO:0022838 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04020 ko04218 ko04621 map04020 map04218 map04621

Pfam Domains

Protein Families

MCU

Protein Analysis

317

Amino Acids

35.5

Weight (kDa)

8.95

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCU	PF04678	127 - 284	5.4e-49	Mitochondrial calcium uniporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09575 AT1G09575 AT1G57610 AT1G57610 AT1G57610 AT1G57610
fragaria_vesca	FvH4_3g41270 FvH4_3g41270
malus_domestica	MD03G1046100.v1.1 MD11G1048400.v1.1
prunus_persica	Prupe.6G037400_v2.0.a1 Prupe.6G037400_v2.0.a1 Prupe.6G037400_v2.0.a1
pyrus_communis	pycom03g03630
rosa_chinensis	RchiOBHm_Chr5g0074071
rosa_laevigata	RLG00000036451
rosa_multiflora	Rmu_co8305125.1_g000001 Rmu_sc0009296.1_g000014 Rmu_sc0011497.1_g000001 Rmu_sc0031541.1_g000001 Rmu_sc0036241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007310 Rroxscaffold_6G00421610
rosa_rugosa	Rorug05G0429000
rosa_samantha	Rh5AG486600 Rh5BG506900 Rh5CG530400 Rh5DG519300 Rh6BG292500 Rh7AG390400 Rh7BG274100 Rh7CG409400
rosa_wichuraiana	Rw5G045160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	577
AccB7I	CCANNNNNTGG	1 cut(s)	80
AccIII	TCCGGA	1 cut(s)	508
AciI	CCGC	6 cut(s)	111, 189, 192, 245, 530, 867
AclWI	GGATC	2 cut(s)	752, 847
AcsI	RAATTY	1 cut(s)	121
AcyI	GRCGYC	1 cut(s)	420
AfaI	GTAC	1 cut(s)	492
AfiI	CCNNNNNNNGG	4 cut(s)	80, 300, 442, 526
AgsI	TTSAA	3 cut(s)	88, 121, 847
AjiI	CACGTC	1 cut(s)	750
AjnI	CCWGG	1 cut(s)	912
AleI	CACNNNNGTG	1 cut(s)	885
AluBI	AGCT	7 cut(s)	214, 298, 475, 544, 634, 713, 925
AluI	AGCT	7 cut(s)	214, 298, 475, 544, 634, 713, 925
Alw21I	GWGCWC	2 cut(s)	624, 927
Alw26I	GTCTC	2 cut(s)	31, 224
AlwI	GGATC	2 cut(s)	752, 847
Ama87I	CYCGRG	2 cut(s)	399, 635
Aor13HI	TCCGGA	1 cut(s)	508
AoxI	GGCC	6 cut(s)	64, 144, 249, 291, 414, 910
ApeKI	GCWGC	4 cut(s)	206, 386, 389, 544
ApoI	RAATTY	1 cut(s)	121
AspLEI	GCGC	1 cut(s)	597
AspS9I	GGNCC	5 cut(s)	65, 145, 292, 445, 589
AsuC2I	CCSGG	1 cut(s)	437
AsuHPI	GGTGA	3 cut(s)	46, 191, 283
AsuII	TTCGAA	1 cut(s)	481
AvaI	CYCGRG	2 cut(s)	399, 635
AvaII	GGWCC	2 cut(s)	445, 589
BanII	GRGCYC	2 cut(s)	642, 927
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	2 cut(s)	624, 927
BbvI	GCAGC	4 cut(s)	218, 373, 376, 531
BccI	CCATC	1 cut(s)	3
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	914
BclI	TGATCA	1 cut(s)	744
BcnI	CCSGG	1 cut(s)	437
BcoDI	GTCTC	2 cut(s)	31, 224
BfaI	CTAG	1 cut(s)	476
BfuAI	ACCTGC	1 cut(s)	577
BglII	AGATCT	1 cut(s)	772
BisI	GCNGC	6 cut(s)	190, 207, 387, 390, 545, 868
BlpI	GCTNAGC	1 cut(s)	215
BlsI	GCNGC	6 cut(s)	191, 208, 388, 391, 546, 869
Bme1390I	CCNGG	2 cut(s)	437, 914
Bme18I	GGWCC	2 cut(s)	445, 589
BmeT110I	CYCGRG	2 cut(s)	399, 635
BmgBI	CACGTC	1 cut(s)	750
BmgT120I	GGNCC	5 cut(s)	65, 145, 292, 445, 589
BmiI	GGNNCC	2 cut(s)	67, 687
BmrFI	CCNGG	2 cut(s)	437, 914
BmsI	GCATC	1 cut(s)	463
BpiI	GAAGAC	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	362
Bpu1102I	GCTNAGC	1 cut(s)	215
Bpu14I	TTCGAA	1 cut(s)	481
BpuMI	CCSGG	1 cut(s)	437
Bsa29I	ATCGAT	1 cut(s)	567
BsaHI	GRCGYC	1 cut(s)	420
BsaWI	WCCGGW	1 cut(s)	508
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	4 cut(s)	80, 300, 442, 526
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	1 cut(s)	885
BseAI	TCCGGA	1 cut(s)	508
BseBI	CCWGG	1 cut(s)	914
BseCI	ATCGAT	1 cut(s)	567
BseGI	GGATG	2 cut(s)	423, 454
BseLI	CCNNNNNNNGG	4 cut(s)	80, 300, 442, 526
BseMII	CTCAG	2 cut(s)	206, 808
BseNI	ACTGG	1 cut(s)	885
BseRI	GAGGAG	4 cut(s)	175, 216, 240, 323
BseXI	GCAGC	4 cut(s)	218, 373, 376, 531
BseYI	CCCAGC	1 cut(s)	294
BshFI	GGCC	6 cut(s)	66, 146, 251, 293, 416, 912
BshVI	ATCGAT	1 cut(s)	567
BsiHKAI	GWGCWC	2 cut(s)	624, 927
BsiHKCI	CYCGRG	2 cut(s)	399, 635
BsiSI	CCGG	5 cut(s)	377, 417, 436, 509, 592
BslFI	GGGAC	4 cut(s)	316, 452, 677, 689
BslI	CCNNNNNNNGG	4 cut(s)	80, 300, 442, 526
BsmAI	GTCTC	2 cut(s)	31, 224
BsmBI	CGTCTC	1 cut(s)	224
BsmFI	GGGAC	4 cut(s)	316, 452, 677, 689
BsmI	GAATGC	2 cut(s)	113, 597
BsnI	GGCC	6 cut(s)	66, 146, 251, 293, 416, 912
BsoBI	CYCGRG	2 cut(s)	399, 635
Bsp119I	TTCGAA	1 cut(s)	481
Bsp1286I	GDGCHC	3 cut(s)	624, 642, 927
Bsp13I	TCCGGA	1 cut(s)	508
Bsp143I	GATC	6 cut(s)	371, 744, 757, 772, 813, 852
Bsp1720I	GCTNAGC	1 cut(s)	215
BspACI	CCGC	6 cut(s)	111, 189, 192, 245, 530, 867
BspANI	GGCC	6 cut(s)	66, 146, 251, 293, 416, 912
BspCNI	CTCAG	2 cut(s)	207, 807
BspDI	ATCGAT	1 cut(s)	567
BspEI	TCCGGA	1 cut(s)	508
BspLI	GGNNCC	2 cut(s)	67, 687
BspMI	ACCTGC	1 cut(s)	577
BspPI	GGATC	2 cut(s)	752, 847
BspT104I	TTCGAA	1 cut(s)	481
BsrFI	RCCGGY	1 cut(s)	416
BsrI	ACTGG	1 cut(s)	885
BssAI	RCCGGY	1 cut(s)	416
BssMI	GATC	6 cut(s)	371, 744, 757, 772, 813, 852
BssNI	GRCGYC	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	914
Bst4CI	ACNGT	1 cut(s)	327
Bst6I	CTCTTC	3 cut(s)	152, 375, 776
BstACI	GRCGYC	1 cut(s)	420
BstBI	TTCGAA	1 cut(s)	481
BstC8I	GCNNGC	3 cut(s)	349, 418, 715
BstDEI	CTNAG	2 cut(s)	215, 794
BstF5I	GGATG	2 cut(s)	423, 454
BstHHI	GCGC	1 cut(s)	597
BstKTI	GATC	6 cut(s)	374, 747, 760, 775, 816, 855
BstMAI	GTCTC	2 cut(s)	31, 224
BstMBI	GATC	6 cut(s)	371, 744, 757, 772, 813, 852
BstMWI	GCNNNNNNNGC	4 cut(s)	265, 290, 395, 592
BstNI	CCWGG	1 cut(s)	914
BstSCI	CCNGG	2 cut(s)	435, 912
BstV1I	GCAGC	4 cut(s)	218, 373, 376, 531
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	3 cut(s)	757, 772, 852
BstXI	CCANNNNNNTGG	1 cut(s)	359
BstYI	RGATCY	3 cut(s)	757, 772, 852
Bsu15I	ATCGAT	1 cut(s)	567
BsuRI	GGCC	6 cut(s)	66, 146, 251, 293, 416, 912
BsuTUI	ATCGAT	1 cut(s)	567
BtrI	CACGTC	1 cut(s)	750
BtsCI	GGATG	2 cut(s)	423, 454
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	2 cut(s)	28, 892
BveI	ACCTGC	1 cut(s)	577
Cac8I	GCNNGC	3 cut(s)	349, 418, 715
CfoI	GCGC	1 cut(s)	597
Cfr10I	RCCGGY	1 cut(s)	416
Cfr13I	GGNCC	5 cut(s)	65, 145, 292, 445, 589
ClaI	ATCGAT	1 cut(s)	567
CseI	GACGC	3 cut(s)	409, 809, 941
Csp6I	GTAC	1 cut(s)	491
CviAII	CATG	2 cut(s)	75, 672
CviQI	GTAC	1 cut(s)	491
DdeI	CTNAG	2 cut(s)	215, 794
DpnI	GATC	6 cut(s)	373, 746, 759, 774, 815, 854
DpnII	GATC	6 cut(s)	371, 744, 757, 772, 813, 852
DraI	TTTAAA	1 cut(s)	288
Eam1104I	CTCTTC	3 cut(s)	152, 375, 776
EarI	CTCTTC	3 cut(s)	152, 375, 776
EciI	GGCGGA	2 cut(s)	207, 545
Ecl136II	GAGCTC	1 cut(s)	925
Eco147I	AGGCCT	1 cut(s)	912
Eco24I	GRGCYC	2 cut(s)	642, 927
Eco32I	GATATC	1 cut(s)	237
Eco47I	GGWCC	2 cut(s)	445, 589
Eco53kI	GAGCTC	1 cut(s)	925
Eco88I	CYCGRG	2 cut(s)	399, 635
EcoICRI	GAGCTC	1 cut(s)	925
EcoO109I	RGGNCCY	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	912
EcoRV	GATATC	1 cut(s)	237
EcoT38I	GRGCYC	2 cut(s)	642, 927
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	2 cut(s)	78, 675
FalI	AAGNNNNNCTT	2 cut(s)	773, 805
FaqI	GGGAC	4 cut(s)	316, 452, 677, 689
FatI	CATG	2 cut(s)	74, 671
FauI	CCCGC	1 cut(s)	104
FbaI	TGATCA	1 cut(s)	744
Fnu4HI	GCNGC	6 cut(s)	190, 207, 387, 390, 545, 868
FokI	GGATG	2 cut(s)	410, 441
FriOI	GRGCYC	2 cut(s)	642, 927
Fsp4HI	GCNGC	6 cut(s)	190, 207, 387, 390, 545, 868
FspBI	CTAG	1 cut(s)	476
GlaI	GCGC	1 cut(s)	596
GluI	GCNGC	6 cut(s)	190, 207, 387, 390, 545, 868
GsaI	CCCAGC	1 cut(s)	298
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	6 cut(s)	66, 146, 251, 293, 416, 912
HapII	CCGG	5 cut(s)	377, 417, 436, 509, 592
HgaI	GACGC	3 cut(s)	409, 809, 941
HhaI	GCGC	1 cut(s)	597
Hin1I	GRCGYC	1 cut(s)	420
Hin1II	CATG	2 cut(s)	78, 675
Hin6I	GCGC	1 cut(s)	595
HinP1I	GCGC	1 cut(s)	595
HinfI	GANTC	4 cut(s)	84, 151, 505, 901
HpaII	CCGG	5 cut(s)	377, 417, 436, 509, 592
HphI	GGTGA	3 cut(s)	46, 191, 283
Hpy188I	TCNGA	2 cut(s)	156, 777
Hpy188III	TCNNGA	8 cut(s)	341, 407, 509, 625, 742, 753, 796, 856
Hpy99I	CGWCG	3 cut(s)	413, 932, 935
HpyAV	CCTTC	1 cut(s)	550
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4IV	ACGT	2 cut(s)	678, 749
HpyCH4V	TGCA	4 cut(s)	131, 454, 547, 717
HpyF10VI	GCNNNNNNNGC	4 cut(s)	265, 290, 395, 592
HpyF3I	CTNAG	2 cut(s)	215, 794
HpySE526I	ACGT	2 cut(s)	678, 749
Hsp92I	GRCGYC	1 cut(s)	420
Hsp92II	CATG	2 cut(s)	78, 675
HspAI	GCGC	1 cut(s)	595
Kpn2I	TCCGGA	1 cut(s)	508
KroI	GCCGGC	1 cut(s)	416
KroNI	GCCGGC	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	744
Kzo9I	GATC	6 cut(s)	371, 744, 757, 772, 813, 852
LmnI	GCTCC	3 cut(s)	203, 472, 627
Lsp1109I	GCAGC	4 cut(s)	218, 373, 376, 531
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	2 cut(s)	678, 749
MalI	GATC	6 cut(s)	373, 746, 759, 774, 815, 854
MboI	GATC	6 cut(s)	371, 744, 757, 772, 813, 852
MboII	GAAGA	8 cut(s)	165, 169, 329, 392, 524, 565, 572, 793
MflI	RGATCY	3 cut(s)	757, 772, 852
MhlI	GDGCHC	3 cut(s)	624, 642, 927
MluCI	AATT	2 cut(s)	121, 826
MlyI	GAGTC	1 cut(s)	499
MmeI	TCCRAC	1 cut(s)	785
MroI	TCCGGA	1 cut(s)	508
MroNI	GCCGGC	1 cut(s)	416
MseI	TTAA	4 cut(s)	287, 536, 897, 949
MslI	CAYNNNNRTG	1 cut(s)	885
MspA1I	CMGCKG	1 cut(s)	189
MspI	CCGG	5 cut(s)	377, 417, 436, 509, 592
MspR9I	CCNGG	2 cut(s)	437, 914
Mva1269I	GAATGC	2 cut(s)	113, 597
MvaI	CCWGG	1 cut(s)	914
MwoI	GCNNNNNNNGC	4 cut(s)	265, 290, 395, 592
NaeI	GCCGGC	1 cut(s)	418
NciI	CCSGG	1 cut(s)	437
NdeII	GATC	6 cut(s)	371, 744, 757, 772, 813, 852
NgoMIV	GCCGGC	1 cut(s)	416
NlaIII	CATG	2 cut(s)	78, 675
NlaIV	GGNNCC	2 cut(s)	67, 687
NspV	TTCGAA	1 cut(s)	481
OliI	CACNNNNGTG	1 cut(s)	885
PceI	AGGCCT	1 cut(s)	912
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PctI	GAATGC	2 cut(s)	113, 597
PdiI	GCCGGC	1 cut(s)	418
PfeI	GAWTC	3 cut(s)	84, 151, 901
PflFI	GACNNNGTC	1 cut(s)	443
PflMI	CCANNNNNTGG	1 cut(s)	80
PfoI	TCCNGGA	1 cut(s)	435
PkrI	GCNGC	6 cut(s)	191, 208, 388, 391, 546, 869
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
PpuMI	RGGWCCY	1 cut(s)	445
Psp124BI	GAGCTC	1 cut(s)	927
Psp5II	RGGWCCY	1 cut(s)	445
Psp6I	CCWGG	1 cut(s)	912
PspFI	CCCAGC	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	912
PspN4I	GGNNCC	2 cut(s)	67, 687
PspPI	GGNCC	5 cut(s)	65, 145, 292, 445, 589
PspPPI	RGGWCCY	1 cut(s)	445
PsuI	RGATCY	3 cut(s)	757, 772, 852
PsyI	GACNNNGTC	1 cut(s)	443
RsaI	GTAC	1 cut(s)	492
RsaNI	GTAC	1 cut(s)	491
RseI	CAYNNNNRTG	1 cut(s)	885
SacI	GAGCTC	1 cut(s)	927
SaqAI	TTAA	4 cut(s)	287, 536, 897, 949
SatI	GCNGC	6 cut(s)	190, 207, 387, 390, 545, 868
Sau3AI	GATC	6 cut(s)	371, 744, 757, 772, 813, 852
Sau96I	GGNCC	5 cut(s)	65, 145, 292, 445, 589
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	2 cut(s)	437, 914
SduI	GDGCHC	3 cut(s)	624, 642, 927
SfaNI	GCATC	1 cut(s)	463
SfuI	TTCGAA	1 cut(s)	481
SinI	GGWCC	2 cut(s)	445, 589
SmiMI	CAYNNNNRTG	1 cut(s)	885
Sse9I	AATT	2 cut(s)	121, 826
SseBI	AGGCCT	1 cut(s)	912
SsiI	CCGC	6 cut(s)	111, 189, 192, 245, 530, 867
SspMI	CTAG	1 cut(s)	476
SstI	GAGCTC	1 cut(s)	927
StuI	AGGCCT	1 cut(s)	912
StyD4I	CCNGG	2 cut(s)	435, 912
TaaI	ACNGT	1 cut(s)	327
TaiI	ACGT	2 cut(s)	681, 752
TaqI	TCGA	7 cut(s)	408, 481, 567, 816, 837, 893, 927
TasI	AATT	2 cut(s)	121, 826
TauI	GCSGC	2 cut(s)	192, 870
TfiI	GAWTC	3 cut(s)	84, 151, 901
Tru1I	TTAA	4 cut(s)	287, 536, 897, 949
Tru9I	TTAA	4 cut(s)	287, 536, 897, 949
TscAI	CASTG	2 cut(s)	28, 892
TseI	GCWGC	4 cut(s)	206, 386, 389, 544
TspDTI	ATGAA	1 cut(s)	794
TspRI	CASTG	2 cut(s)	28, 892
Tth111I	GACNNNGTC	1 cut(s)	443
Van91I	CCANNNNNTGG	1 cut(s)	80
VpaK11BI	GGWCC	2 cut(s)	445, 589
XapI	RAATTY	1 cut(s)	121
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.