Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031541.1

Orthogroup ID

OG0004061

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1888

Gene Structure 1888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031541.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 526 bp

tgaattttgcctttgttacctcgtccaccttctttattataatactggtgtttctattgtcatccccattgctcaaagtttcttgcttttttttgggaatgatgaggaacaatgtgggtttttgaattctcctggaaagtttcacagaagggctgggtttgcttcttctggtggggatgtcaatggggagggtgagaatatcagtaaaggtgcgggtatgggaggaatgcccataagttttggggaggccaagaggcttatgaggcttgtgaatgtggaggctttgaagactaagcttgggacagaagggaaagaggccattccttattctgagttgcttgaggcttgtcagagcattggtgtggctagatctcgggatgaggctgctacttttgctagggtgctcgatgaggctggagtcatccttctcttcagggataaggttctgcttcatcctgatagggaggagatatgccctattaattcgtgttgggtcttatttatggactcgaaaagaaaagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015267 GO:0015291 GO:0015292 GO:0015318 GO:0022803 GO:0022804 GO:0022838 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04020 ko04218 ko04621 map04020 map04218 map04621

Pfam Domains

Protein Families

MCU

Protein Analysis

174

Amino Acids

19.1

Weight (kDa)

5.68

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09575 AT1G09575 AT1G57610 AT1G57610 AT1G57610 AT1G57610
fragaria_vesca	FvH4_3g41270 FvH4_3g41270
malus_domestica	MD03G1046100.v1.1 MD11G1048400.v1.1
prunus_persica	Prupe.6G037400_v2.0.a1 Prupe.6G037400_v2.0.a1 Prupe.6G037400_v2.0.a1
pyrus_communis	pycom03g03630
rosa_chinensis	RchiOBHm_Chr5g0074071
rosa_laevigata	RLG00000036451
rosa_multiflora	Rmu_co8305125.1_g000001 Rmu_sc0009296.1_g000014 Rmu_sc0011497.1_g000001 Rmu_sc0031541.1_g000001 Rmu_sc0036241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007310 Rroxscaffold_6G00421610
rosa_rugosa	Rorug05G0429000
rosa_samantha	Rh5AG486600 Rh5BG506900 Rh5CG530400 Rh5DG519300 Rh6BG292500 Rh7AG390400 Rh7BG274100 Rh7CG409400
rosa_wichuraiana	Rw5G045160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	40
AciI	CCGC	1 cut(s)	213
AcsI	RAATTY	2 cut(s)	3, 125
AcuI	CTGAAG	1 cut(s)	416
AgsI	TTSAA	2 cut(s)	125, 287
AjnI	CCWGG	1 cut(s)	131
AluBI	AGCT	2 cut(s)	296, 522
AluI	AGCT	2 cut(s)	296, 522
Alw21I	GWGCWC	1 cut(s)	406
Ama87I	CYCGRG	1 cut(s)	373
AoxI	GGCC	2 cut(s)	247, 316
ApeKI	GCWGC	1 cut(s)	384
ApoI	RAATTY	2 cut(s)	3, 125
AseI	ATTAAT	1 cut(s)	481
AsuHPI	GGTGA	1 cut(s)	204
AvaI	CYCGRG	1 cut(s)	373
BbsI	GAAGAC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	406
BbvI	GCAGC	1 cut(s)	371
BciT130I	CCWGG	1 cut(s)	133
BfaI	CTAG	2 cut(s)	367, 397
BglII	AGATCT	1 cut(s)	369
BisI	GCNGC	1 cut(s)	385
BlsI	GCNGC	1 cut(s)	386
Bme1390I	CCNGG	1 cut(s)	133
BmeT110I	CYCGRG	1 cut(s)	373
BmrFI	CCNGG	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	294
BpmI	CTGGAG	1 cut(s)	436
BpuEI	CTTGAG	1 cut(s)	360
Bse1I	ACTGG	1 cut(s)	50
Bse3DI	GCAATG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	133
BseGI	GGATG	5 cut(s)	61, 182, 383, 421, 452
BseMI	GCAATG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	322
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	480
BseXI	GCAGC	1 cut(s)	371
BseYI	CCCAGC	1 cut(s)	153
BshFI	GGCC	2 cut(s)	249, 318
BsiHKAI	GWGCWC	1 cut(s)	406
BsiHKCI	CYCGRG	1 cut(s)	373
BslFI	GGGAC	1 cut(s)	314
BsmFI	GGGAC	1 cut(s)	314
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	2 cut(s)	249, 318
BsoBI	CYCGRG	1 cut(s)	373
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	1 cut(s)	369
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	2 cut(s)	249, 318
BspCNI	CTCAG	1 cut(s)	323
BsrDI	GCAATG	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	50
BssMI	GATC	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	435
BstDEI	CTNAG	2 cut(s)	292, 331
BstF5I	GGATG	5 cut(s)	61, 182, 383, 421, 452
BstKTI	GATC	1 cut(s)	372
BstMBI	GATC	1 cut(s)	369
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 263, 393
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	371
BstV2I	GAAGAC	1 cut(s)	294
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BsuRI	GGCC	2 cut(s)	249, 318
BtsCI	GGATG	5 cut(s)	61, 182, 383, 421, 452
DdeI	CTNAG	2 cut(s)	292, 331
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Eco57I	CTGAAG	1 cut(s)	416
Eco88I	CYCGRG	1 cut(s)	373
EcoRI	GAATTC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	131
FaiI	YATR	6 cut(s)	40, 219, 234, 261, 473, 504
FalI	AAGNNNNNCTT	1 cut(s)	506
FaqI	GGGAC	1 cut(s)	314
FauI	CCCGC	1 cut(s)	206
Fnu4HI	GCNGC	1 cut(s)	385
FokI	GGATG	5 cut(s)	48, 189, 390, 408, 439
Fsp4HI	GCNGC	1 cut(s)	385
FspBI	CTAG	2 cut(s)	367, 397
GluI	GCNGC	1 cut(s)	385
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	1 cut(s)	436
HaeIII	GGCC	2 cut(s)	249, 318
HindIII	AAGCTT	2 cut(s)	294, 520
HinfI	GANTC	2 cut(s)	418, 507
HphI	GGTGA	1 cut(s)	204
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	2 cut(s)	332, 352
Hpy188III	TCNNGA	2 cut(s)	375, 456
Hpy8I	GTNNAC	1 cut(s)	26
HpyAV	CCTTC	4 cut(s)	39, 142, 300, 435
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 263, 393
HpyF3I	CTNAG	2 cut(s)	292, 331
Kzo9I	GATC	1 cut(s)	369
LpnPI	CCDG	8 cut(s)	31, 118, 139, 145, 154, 400, 419, 469
Lsp1109I	GCAGC	1 cut(s)	371
MaeI	CTAG	2 cut(s)	367, 397
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MboII	GAAGA	3 cut(s)	157, 299, 422
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	3 cut(s)	3, 125, 482
MlyI	GAGTC	2 cut(s)	427, 501
MseI	TTAA	2 cut(s)	481, 524
MslI	CAYNNNNRTG	1 cut(s)	360
MspR9I	CCNGG	1 cut(s)	133
Mva1269I	GAATGC	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	3 cut(s)	159, 263, 393
NdeII	GATC	1 cut(s)	369
PctI	GAATGC	1 cut(s)	232
PfoI	TCCNGGA	1 cut(s)	131
PkrI	GCNGC	1 cut(s)	386
PleI	GAGTC	2 cut(s)	426, 501
PpsI	GAGTC	2 cut(s)	426, 501
PshBI	ATTAAT	1 cut(s)	481
PsiI	TTATAA	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	131
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	369
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	2 cut(s)	481, 524
SatI	GCNGC	1 cut(s)	385
Sau3AI	GATC	1 cut(s)	369
SchI	GAGTC	2 cut(s)	427, 501
ScrFI	CCNGG	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	406
SetI	ASST	6 cut(s)	22, 31, 212, 298, 445, 524
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	339
SmoI	CTYRAG	1 cut(s)	339
Sse9I	AATT	3 cut(s)	3, 125, 482
SsiI	CCGC	1 cut(s)	213
SspMI	CTAG	2 cut(s)	367, 397
StyD4I	CCNGG	1 cut(s)	131
TaqI	TCGA	2 cut(s)	406, 510
TasI	AATT	3 cut(s)	3, 125, 482
Tru1I	TTAA	2 cut(s)	481, 524
Tru9I	TTAA	2 cut(s)	481, 524
TseI	GCWGC	1 cut(s)	384
TspDTI	ATGAA	1 cut(s)	441
VspI	ATTAAT	1 cut(s)	481
XapI	RAATTY	2 cut(s)	3, 125
XspI	CTAG	2 cut(s)	367, 397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.