Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004061

Physical Location & Seq

Genomic Coordinates Forward (+)

51830700 .. 51831095

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG292500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTGGAGGAGTGGGTGGAGAACAACCAGTGTTGTGCTCAAGGATTTGGTGCACCATAGAGGACCCAGAAGCCAAAACCCATGTGCTGTGTTTGGTTTGAGGCATTTTGGGAATGATGAGGAACAATGTGGGTTTTTGAATTCTCCTGGAAAGTTTCAGAGAAGGGCTGGGTTTGCTTCTTCTGGTGGGGATGTCAATGGGGAGGGTGAGAATATCAGTAAAGGTGCAGGTTTGGGAGGAATGCCCATAAGTTTTGGGGAGGCCAAGAGGCTTATGAGGCTTGTGAATGTGGAGGCTTTGAAGACTAAGCTTGGGACAGAAGGGAAAGAGGCCATTCCTTATTCTGAGCTGCTTGAGGCTTGTCAGAGCATTGGTGTGGCTAGAAGAATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015267 GO:0015291 GO:0015292 GO:0015318 GO:0022803 GO:0022804 GO:0022838 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04020 ko04218 ko04621 map04020 map04218 map04621

Pfam Domains

Protein Families

MCU

Protein Analysis

131

Amino Acids

14.22

Weight (kDa)

9.21

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09575 AT1G09575 AT1G57610 AT1G57610 AT1G57610 AT1G57610
fragaria_vesca	FvH4_3g41270 FvH4_3g41270
malus_domestica	MD03G1046100.v1.1 MD11G1048400.v1.1
prunus_persica	Prupe.6G037400_v2.0.a1 Prupe.6G037400_v2.0.a1 Prupe.6G037400_v2.0.a1
pyrus_communis	pycom03g03630
rosa_chinensis	RchiOBHm_Chr5g0074071
rosa_laevigata	RLG00000036451
rosa_multiflora	Rmu_co8305125.1_g000001 Rmu_sc0009296.1_g000014 Rmu_sc0011497.1_g000001 Rmu_sc0031541.1_g000001 Rmu_sc0036241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007310 Rroxscaffold_6G00421610
rosa_rugosa	Rorug05G0429000
rosa_samantha	Rh5AG486600 Rh5BG506900 Rh5CG530400 Rh5DG519300 Rh6BG292500 Rh7AG390400 Rh7BG274100 Rh7CG409400
rosa_wichuraiana	Rw5G045160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	218
AcsI	RAATTY	1 cut(s)	139
AgsI	TTSAA	2 cut(s)	139, 301
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	2 cut(s)	310, 349
AluI	AGCT	2 cut(s)	310, 349
Alw21I	GWGCWC	2 cut(s)	39, 54
Alw44I	GTGCAC	1 cut(s)	50
AoxI	GGCC	2 cut(s)	261, 330
ApaLI	GTGCAC	1 cut(s)	50
ApeKI	GCWGC	1 cut(s)	349
ApoI	RAATTY	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	308
Bbv12I	GWGCWC	2 cut(s)	39, 54
BbvI	GCAGC	1 cut(s)	336
BciT130I	CCWGG	1 cut(s)	147
BfaI	CTAG	1 cut(s)	381
BfuAI	ACCTGC	1 cut(s)	218
BisI	GCNGC	1 cut(s)	350
BlsI	GCNGC	1 cut(s)	351
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	308
BpuEI	CTTGAG	2 cut(s)	23, 374
Bse1I	ACTGG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	147
BseGI	GGATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	22
BseSI	GKGCMC	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	336
BseYI	CCCAGC	1 cut(s)	167
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	2 cut(s)	263, 332
BsiHKAI	GWGCWC	2 cut(s)	39, 54
BslFI	GGGAC	1 cut(s)	328
BsmFI	GGGAC	1 cut(s)	328
BsmI	GAATGC	1 cut(s)	246
BsnI	GGCC	2 cut(s)	263, 332
Bsp1286I	GDGCHC	2 cut(s)	39, 54
BspANI	GGCC	2 cut(s)	263, 332
BspCNI	CTCAG	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	64
BspMI	ACCTGC	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	306, 345
BstF5I	GGATG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 277
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	145
BstSLI	GKGCMC	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	336
BstV2I	GAAGAC	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	263, 332
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	34
BveI	ACCTGC	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	62
CviAII	CATG	1 cut(s)	81
DdeI	CTNAG	2 cut(s)	306, 345
Eco47I	GGWCC	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	62
EcoRI	GAATTC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	145
FaeI	CATG	1 cut(s)	84
FaiI	YATR	4 cut(s)	57, 82, 248, 275
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	1 cut(s)	80
Fnu4HI	GCNGC	1 cut(s)	350
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	350
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	1 cut(s)	350
GsaI	CCCAGC	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	263, 332
Hin1II	CATG	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	308
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	3 cut(s)	159, 346, 366
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	156, 314
HpyCH4V	TGCA	2 cut(s)	52, 227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 277
HpyF3I	CTNAG	2 cut(s)	306, 345
Hsp92II	CATG	1 cut(s)	84
LpnPI	CCDG	7 cut(s)	40, 79, 132, 153, 159, 168, 213
Lsp1109I	GCAGC	1 cut(s)	336
MaeI	CTAG	1 cut(s)	381
MboII	GAAGA	3 cut(s)	171, 313, 396
MhlI	GDGCHC	2 cut(s)	39, 54
MluCI	AATT	1 cut(s)	139
MslI	CAYNNNNRTG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	173, 277
NlaIII	CATG	1 cut(s)	84
NlaIV	GGNNCC	1 cut(s)	64
PctI	GAATGC	1 cut(s)	246
PfoI	TCCNGGA	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	351
PpuMI	RGGWCCY	1 cut(s)	62
Psp5II	RGGWCCY	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	145
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	62
PspPPI	RGGWCCY	1 cut(s)	62
RseI	CAYNNNNRTG	1 cut(s)	374
SatI	GCNGC	1 cut(s)	350
Sau96I	GGNCC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	2 cut(s)	39, 54
SetI	ASST	4 cut(s)	226, 232, 312, 351
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	2 cut(s)	38, 353
SmoI	CTYRAG	2 cut(s)	38, 353
Sse9I	AATT	1 cut(s)	139
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	1 cut(s)	145
TasI	AATT	1 cut(s)	139
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	1 cut(s)	349
TspRI	CASTG	1 cut(s)	34
VneI	GTGCAC	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	139
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.