Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004061

Physical Location & Seq

Genomic Coordinates Forward (+)

25449435 .. 25449755

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG274100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTGGAGGAGTGGGTGGAGAACAACCAGTGTTGTGCTCAAGGATTTGGTGCACCATGGAGGACCCAGAAGCCAAAACCCATGTGCTGTGTTTGGTTTGAGGCGTTTTGGGAATGATGAGGAACAATGTGGGTTTTTGAATTCTCTTGGAAAGTTTCAGAGAAGGGCTGGGTTTGCTTCTTCTGGTGGGGATGTCAATGGAGAGGGTGAGAATATCAGTAAAGGTGCAGGTTTGGGAGGAATGCCCATAAGTTTTGGGGAGGCCAAGAGGCTTATGAGGCTTGTGAATGTGGAGGCTTTGAAGACTAAGCTTGGGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015267 GO:0015291 GO:0015292 GO:0015318 GO:0022803 GO:0022804 GO:0022838 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04020 ko04218 ko04621 map04020 map04218 map04621

Pfam Domains

Protein Families

MCU

Protein Analysis

106

Amino Acids

11.41

Weight (kDa)

10.02

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09575 AT1G09575 AT1G57610 AT1G57610 AT1G57610 AT1G57610
fragaria_vesca	FvH4_3g41270 FvH4_3g41270
malus_domestica	MD03G1046100.v1.1 MD11G1048400.v1.1
prunus_persica	Prupe.6G037400_v2.0.a1 Prupe.6G037400_v2.0.a1 Prupe.6G037400_v2.0.a1
pyrus_communis	pycom03g03630
rosa_chinensis	RchiOBHm_Chr5g0074071
rosa_laevigata	RLG00000036451
rosa_multiflora	Rmu_co8305125.1_g000001 Rmu_sc0009296.1_g000014 Rmu_sc0011497.1_g000001 Rmu_sc0031541.1_g000001 Rmu_sc0036241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007310 Rroxscaffold_6G00421610
rosa_rugosa	Rorug05G0429000
rosa_samantha	Rh5AG486600 Rh5BG506900 Rh5CG530400 Rh5DG519300 Rh6BG292500 Rh7AG390400 Rh7BG274100 Rh7CG409400
rosa_wichuraiana	Rw5G045160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	218
AcsI	RAATTY	1 cut(s)	139
AgsI	TTSAA	2 cut(s)	139, 301
AluBI	AGCT	1 cut(s)	310
AluI	AGCT	1 cut(s)	310
Alw21I	GWGCWC	2 cut(s)	39, 54
Alw44I	GTGCAC	1 cut(s)	50
AoxI	GGCC	1 cut(s)	261
ApaLI	GTGCAC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	308
Bbv12I	GWGCWC	2 cut(s)	39, 54
BfuAI	ACCTGC	1 cut(s)	218
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	22
BseSI	GKGCMC	1 cut(s)	54
BseYI	CCCAGC	1 cut(s)	167
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	263
BsiHKAI	GWGCWC	2 cut(s)	39, 54
BsmI	GAATGC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	39, 54
Bsp19I	CCATGG	1 cut(s)	55
BspANI	GGCC	1 cut(s)	263
BspLI	GGNNCC	1 cut(s)	64
BspMI	ACCTGC	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	55
BstDEI	CTNAG	1 cut(s)	306
BstDSI	CCRYGG	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 277
BstSLI	GKGCMC	1 cut(s)	54
BstV2I	GAAGAC	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	263
BtgI	CCRYGG	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	34
BveI	ACCTGC	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	62
CviAII	CATG	2 cut(s)	56, 81
CviJI	RGCY	7 cut(s)	72, 167, 263, 271, 280, 296, 310
CviKI_1	RGCY	7 cut(s)	72, 167, 263, 271, 280, 296, 310
DdeI	CTNAG	1 cut(s)	306
Eco130I	CCWWGG	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	62
EcoRI	GAATTC	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	2 cut(s)	59, 84
FaiI	YATR	5 cut(s)	57, 82, 248, 275, 319
FatI	CATG	2 cut(s)	55, 80
FokI	GGATG	1 cut(s)	203
GsaI	CCCAGC	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	263
Hin1II	CATG	2 cut(s)	59, 84
HindIII	AAGCTT	1 cut(s)	308
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	159
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	156
HpyCH4V	TGCA	2 cut(s)	52, 227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 277
HpyF3I	CTNAG	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	59, 84
LpnPI	CCDG	5 cut(s)	40, 79, 153, 168, 213
MboII	GAAGA	2 cut(s)	171, 313
MhlI	GDGCHC	2 cut(s)	39, 54
MluCI	AATT	1 cut(s)	139
MnlI	CCTC	9 cut(s)	53, 93, 112, 196, 230, 253, 261, 270, 286
Mva1269I	GAATGC	1 cut(s)	246
MwoI	GCNNNNNNNGC	2 cut(s)	173, 277
NcoI	CCATGG	1 cut(s)	55
NlaIII	CATG	2 cut(s)	59, 84
NlaIV	GGNNCC	1 cut(s)	64
PctI	GAATGC	1 cut(s)	246
PpuMI	RGGWCCY	1 cut(s)	62
Psp5II	RGGWCCY	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	62
PspPPI	RGGWCCY	1 cut(s)	62
Sau96I	GGNCC	1 cut(s)	62
SduI	GDGCHC	2 cut(s)	39, 54
SetI	ASST	3 cut(s)	226, 232, 312
SinI	GGWCC	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	1 cut(s)	139
StyI	CCWWGG	1 cut(s)	55
TasI	AATT	1 cut(s)	139
TscAI	CASTG	1 cut(s)	34
TspRI	CASTG	1 cut(s)	34
VneI	GTGCAC	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.