Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036241.1

Orthogroup ID

OG0004061

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 885

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036241.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

gttgtggatctggttagaagagcagtacccctggctctgactcctgataatgaccctgtgtgggaagagttaaagaagatgcaggagaagaagatagaaattgatatcttggcacataggcatgtccggcgtgtactctggggcggcctggggttgattacaacacagctcgccctctttttcaggatgacatattgggatttctcatgggatgtggttgagccacttgcgtatttcaccacaacaacttgcattggcataggctatgcgtactttttgattacttcaagagatccgacttaccaagacttgatgaagagactttttctccggaagcagaggaaacttatcaagaagcagaactttgatgttgagagattcaaggagatacagagaaaatacgatacaactctacacgccagcacctcaatcaagaaccggatcggcatggatgtggagctggacgatgctttacacagagattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015267 GO:0015291 GO:0015292 GO:0015318 GO:0022803 GO:0022804 GO:0022838 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04020 ko04218 ko04621 map04020 map04218 map04621

Pfam Domains

Protein Families

MCU

Protein Analysis

161

Amino Acids

19.12

Weight (kDa)

9.19

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09575 AT1G09575 AT1G57610 AT1G57610 AT1G57610 AT1G57610
fragaria_vesca	FvH4_3g41270 FvH4_3g41270
malus_domestica	MD03G1046100.v1.1 MD11G1048400.v1.1
prunus_persica	Prupe.6G037400_v2.0.a1 Prupe.6G037400_v2.0.a1 Prupe.6G037400_v2.0.a1
pyrus_communis	pycom03g03630
rosa_chinensis	RchiOBHm_Chr5g0074071
rosa_laevigata	RLG00000036451
rosa_multiflora	Rmu_co8305125.1_g000001 Rmu_sc0009296.1_g000014 Rmu_sc0011497.1_g000001 Rmu_sc0031541.1_g000001 Rmu_sc0036241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007310 Rroxscaffold_6G00421610
rosa_rugosa	Rorug05G0429000
rosa_samantha	Rh5AG486600 Rh5BG506900 Rh5CG530400 Rh5DG519300 Rh6BG292500 Rh7AG390400 Rh7BG274100 Rh7CG409400
rosa_wichuraiana	Rw5G045160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	330
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	3 cut(s)	15, 287, 449
AfaI	GTAC	3 cut(s)	27, 135, 272
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	288, 382
AjnI	CCWGG	2 cut(s)	30, 147
AluBI	AGCT	2 cut(s)	169, 460
AluI	AGCT	2 cut(s)	169, 460
Alw26I	GTCTC	1 cut(s)	313
AlwI	GGATC	3 cut(s)	15, 287, 449
Aor13HI	TCCGGA	1 cut(s)	330
AoxI	GGCC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	229
BciT130I	CCWGG	2 cut(s)	32, 149
BcoDI	GTCTC	1 cut(s)	313
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
Bme1390I	CCNGG	2 cut(s)	32, 149
BmrFI	CCNGG	2 cut(s)	32, 149
BmsI	GCATC	2 cut(s)	69, 457
BsaJI	CCNNGG	2 cut(s)	30, 148
BsaWI	WCCGGW	2 cut(s)	330, 438
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
BseAI	TCCGGA	1 cut(s)	330
BseBI	CCWGG	2 cut(s)	32, 149
BseDI	CCNNGG	2 cut(s)	30, 148
BseGI	GGATG	3 cut(s)	192, 217, 457
BseLI	CCNNNNNNNGG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	147
BsiSI	CCGG	3 cut(s)	127, 331, 439
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	147
Bsp13I	TCCGGA	1 cut(s)	330
Bsp143I	GATC	3 cut(s)	7, 292, 441
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	1 cut(s)	147
BspEI	TCCGGA	1 cut(s)	330
BspPI	GGATC	3 cut(s)	15, 287, 449
BspQI	GCTCTTC	1 cut(s)	13
BssECI	CCNNGG	2 cut(s)	30, 148
BssMI	GATC	3 cut(s)	7, 292, 441
Bst2UI	CCWGG	2 cut(s)	32, 149
Bst6I	CTCTTC	3 cut(s)	13, 60, 311
BstC8I	GCNNGC	2 cut(s)	171, 421
BstF5I	GGATG	3 cut(s)	192, 217, 457
BstKTI	GATC	3 cut(s)	10, 295, 444
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	3 cut(s)	7, 292, 441
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	2 cut(s)	32, 149
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	2 cut(s)	30, 147
BstX2I	RGATCY	2 cut(s)	7, 292
BstYI	RGATCY	2 cut(s)	7, 292
BsuRI	GGCC	1 cut(s)	147
BtsCI	GGATG	3 cut(s)	192, 217, 457
Cac8I	GCNNGC	2 cut(s)	171, 421
Csp6I	GTAC	3 cut(s)	26, 134, 271
CviAII	CATG	3 cut(s)	122, 207, 448
CviJI	RGCY	6 cut(s)	35, 147, 169, 223, 264, 460
CviKI_1	RGCY	6 cut(s)	35, 147, 169, 223, 264, 460
CviQI	GTAC	3 cut(s)	26, 134, 271
DpnI	GATC	3 cut(s)	9, 294, 443
DpnII	GATC	3 cut(s)	7, 292, 441
Eam1104I	CTCTTC	3 cut(s)	13, 60, 311
EarI	CTCTTC	3 cut(s)	13, 60, 311
Eco32I	GATATC	1 cut(s)	106
EcoRII	CCWGG	2 cut(s)	30, 147
EcoRV	GATATC	1 cut(s)	106
FaeI	CATG	3 cut(s)	125, 210, 451
FaiI	YATR	7 cut(s)	117, 123, 193, 208, 260, 267, 449
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FatI	CATG	3 cut(s)	121, 206, 447
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	3 cut(s)	199, 224, 464
Fsp4HI	GCNGC	1 cut(s)	145
GluI	GCNGC	1 cut(s)	145
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	3 cut(s)	127, 331, 439
Hin1II	CATG	3 cut(s)	125, 210, 451
HinfI	GANTC	2 cut(s)	40, 378
HpaII	CCGG	3 cut(s)	127, 331, 439
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	2 cut(s)	39, 297
Hpy188III	TCNNGA	6 cut(s)	44, 184, 288, 331, 352, 433
Hpy8I	GTNNAC	1 cut(s)	134
HpyCH4V	TGCA	2 cut(s)	82, 252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
Hsp92II	CATG	3 cut(s)	125, 210, 451
Kpn2I	TCCGGA	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	7, 292, 441
LguI	GCTCTTC	1 cut(s)	13
LmnI	GCTCC	1 cut(s)	457
LweI	GCATC	2 cut(s)	69, 457
MalI	GATC	3 cut(s)	9, 294, 443
MboI	GATC	3 cut(s)	7, 292, 441
MboII	GAAGA	6 cut(s)	30, 77, 88, 100, 103, 328
MflI	RGATCY	2 cut(s)	7, 292
MluCI	AATT	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	34
MmeI	TCCRAC	1 cut(s)	320
MnlI	CCTC	3 cut(s)	185, 333, 436
MroI	TCCGGA	1 cut(s)	330
MseI	TTAA	2 cut(s)	71, 484
MslI	CAYNNNNRTG	2 cut(s)	120, 452
MspI	CCGG	3 cut(s)	127, 331, 439
MspR9I	CCNGG	2 cut(s)	32, 149
MvaI	CCWGG	2 cut(s)	32, 149
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	3 cut(s)	7, 292, 441
NlaIII	CATG	3 cut(s)	125, 210, 451
NspI	RCATGY	1 cut(s)	125
PciSI	GCTCTTC	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	378
PkrI	GCNGC	1 cut(s)	146
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
Psp6I	CCWGG	2 cut(s)	30, 147
PspGI	CCWGG	2 cut(s)	30, 147
PsuI	RGATCY	2 cut(s)	7, 292
RsaI	GTAC	3 cut(s)	27, 135, 272
RsaNI	GTAC	3 cut(s)	26, 134, 271
RseI	CAYNNNNRTG	2 cut(s)	120, 452
SapI	GCTCTTC	1 cut(s)	13
SaqAI	TTAA	2 cut(s)	71, 484
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	3 cut(s)	7, 292, 441
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	2 cut(s)	32, 149
SetI	ASST	3 cut(s)	171, 428, 462
SfaNI	GCATC	2 cut(s)	69, 457
SmiMI	CAYNNNNRTG	2 cut(s)	120, 452
Sse9I	AATT	1 cut(s)	99
SsiI	CCGC	1 cut(s)	144
StyD4I	CCNGG	2 cut(s)	30, 147
TasI	AATT	1 cut(s)	99
TatI	WGTACW	1 cut(s)	133
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	378
Tru1I	TTAA	2 cut(s)	71, 484
Tru9I	TTAA	2 cut(s)	71, 484
TspDTI	ATGAA	1 cut(s)	329
XceI	RCATGY	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.