Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004061

Physical Location & Seq

Genomic Coordinates Forward (+)

9364033 .. 9372267

Gene Structure 8235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00007310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTGGAGGAGTGGGTGGAGAACAACCGGAGTTGTGCTCAAGGATTTGGTGCACCGTGGAGGACCCAGAAGCGCAAACCCATGTGCTGTGTTTGGTTTGAGGCGTTTTGGGAATGATGAGGAACAATGTGGGTTTTTGAATTCTCCTGGGAAGTTTCAGAGAAGGGCTGGGTTTGCTTCTTCTGGTGGGGATGTCAATGGGGAGGGTGAGAATATCAGTAAAGGTGCAGGTTTGGGAGGAATGCCCATAAGTTTTGGGGAGGCCAAGAGGCTTATGAGGCTTGTGAATGTGGAGGCTTTGAAGACTAAGCTTGGGACAGAAGGGAAAGAGGCCATTCCTTATTCTGAGTTGCTTGAGGCTTGTCAGAGCATTGGTGTGGCTAGAACTCGGGATGAGGCTGCTACTTTTGCTAGGGTGCTGGATGAGGCTGGAGTCATCCTTCTCTTCAGGGATAAGGTTCTGCTTCATCCTGATAGGGTTGACTCATACAACTTCTTTGCATTGTTGAATGTTCAGGTTGTGGATCTGGTTAGAAGAGCAGTACCCCTGGCTCTGACTCCTGATAATGACCCTGTGTGGGAAGAGTTAAAGAAGATGCAGGAGAAGAAGATAGAAATTGATATCTTGGCACATAGGCATGTCCGGCGTGTACTCTGGGGCGGCCTGGGGTTGATTACAACACAGCTCGCCCTCTTTTTCAGGATGACATATTGGGATTTCTCATGGGATGTGGTTGAGCCACTTGCGTATTTCACCACAACAACTTGCATTGGCATAGGCTATGCGTACTTTTTGATTACTTCAAGAGATCCGACTTACCAAGACTTGATGAAGAGGCTTTTTCTCCGGAAGCAGAGGAAACTTATCAAGAAGCAGAACTTTGATGTTGAGAGATTCAAGGAGATACAGAGAAAATACGATACAACTCTACACGCCAGCACCTCAATCAAGAACCGGATCGGCATGGATGTGGAGCTGGACGATGCTTTACACAGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015267 GO:0015291 GO:0015292 GO:0015318 GO:0022803 GO:0022804 GO:0022838 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04020 ko04218 ko04621 map04020 map04218 map04621

Pfam Domains

Protein Families

MCU

Protein Analysis

333

Amino Acids

37.8

Weight (kDa)

9.17

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCU	PF04678	131 - 301	5.1e-47	Mitochondrial calcium uniporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09575 AT1G09575 AT1G57610 AT1G57610 AT1G57610 AT1G57610
fragaria_vesca	FvH4_3g41270 FvH4_3g41270
malus_domestica	MD03G1046100.v1.1 MD11G1048400.v1.1
prunus_persica	Prupe.6G037400_v2.0.a1 Prupe.6G037400_v2.0.a1 Prupe.6G037400_v2.0.a1
pyrus_communis	pycom03g03630
rosa_chinensis	RchiOBHm_Chr5g0074071
rosa_laevigata	RLG00000036451
rosa_multiflora	Rmu_co8305125.1_g000001 Rmu_sc0009296.1_g000014 Rmu_sc0011497.1_g000001 Rmu_sc0031541.1_g000001 Rmu_sc0036241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007310 Rroxscaffold_6G00421610
rosa_rugosa	Rorug05G0429000
rosa_samantha	Rh5AG486600 Rh5BG506900 Rh5CG530400 Rh5DG519300 Rh6BG292500 Rh7AG390400 Rh7BG274100 Rh7CG409400
rosa_wichuraiana	Rw5G045160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	218
AccIII	TCCGGA	1 cut(s)	846
AciI	CCGC	1 cut(s)	660
AclWI	GGATC	3 cut(s)	531, 803, 965
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	1 cut(s)	430
AfaI	GTAC	3 cut(s)	543, 651, 788
AfiI	CCNNNNNNNGG	1 cut(s)	577
AgsI	TTSAA	5 cut(s)	139, 301, 508, 804, 898
AjnI	CCWGG	3 cut(s)	145, 546, 663
AluBI	AGCT	3 cut(s)	310, 685, 976
AluI	AGCT	3 cut(s)	310, 685, 976
Alw21I	GWGCWC	2 cut(s)	39, 54
Alw44I	GTGCAC	1 cut(s)	50
AlwI	GGATC	3 cut(s)	531, 803, 965
Ama87I	CYCGRG	1 cut(s)	387
Aor13HI	TCCGGA	1 cut(s)	846
AoxI	GGCC	3 cut(s)	261, 330, 661
ApaLI	GTGCAC	1 cut(s)	50
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	2 cut(s)	218, 745
AvaI	CYCGRG	1 cut(s)	387
AvaII	GGWCC	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	308
Bbv12I	GWGCWC	2 cut(s)	39, 54
BbvI	GCAGC	1 cut(s)	385
BciT130I	CCWGG	3 cut(s)	147, 548, 665
BfaI	CTAG	2 cut(s)	381, 411
BfuAI	ACCTGC	1 cut(s)	218
BisI	GCNGC	2 cut(s)	399, 661
BlsI	GCNGC	2 cut(s)	400, 662
Bme1390I	CCNGG	3 cut(s)	147, 548, 665
Bme18I	GGWCC	1 cut(s)	62
BmeT110I	CYCGRG	1 cut(s)	387
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	3 cut(s)	147, 548, 665
BmsI	GCATC	2 cut(s)	585, 973
BpiI	GAAGAC	1 cut(s)	308
BplI	GAGNNNNNCTC	2 cut(s)	21, 53
BpmI	CTGGAG	1 cut(s)	450
BpuEI	CTTGAG	2 cut(s)	23, 374
BsaJI	CCNNGG	4 cut(s)	55, 146, 546, 664
BsaWI	WCCGGW	3 cut(s)	26, 846, 954
Bsc4I	CCNNNNNNNGG	1 cut(s)	577
BseAI	TCCGGA	1 cut(s)	846
BseBI	CCWGG	3 cut(s)	147, 548, 665
BseDI	CCNNGG	4 cut(s)	55, 146, 546, 664
BseGI	GGATG	8 cut(s)	196, 397, 427, 435, 466, 708, 733, 973
BseLI	CCNNNNNNNGG	1 cut(s)	577
BseMII	CTCAG	1 cut(s)	336
BseRI	GAGGAG	1 cut(s)	22
BseSI	GKGCMC	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	385
BseYI	CCCAGC	1 cut(s)	167
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	3 cut(s)	263, 332, 663
BsiHKAI	GWGCWC	2 cut(s)	39, 54
BsiHKCI	CYCGRG	1 cut(s)	387
BsiSI	CCGG	4 cut(s)	27, 643, 847, 955
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	577
BsmFI	GGGAC	1 cut(s)	328
BsmI	GAATGC	1 cut(s)	246
BsnI	GGCC	3 cut(s)	263, 332, 663
BsoBI	CYCGRG	1 cut(s)	387
Bsp1286I	GDGCHC	2 cut(s)	39, 54
Bsp13I	TCCGGA	1 cut(s)	846
Bsp143I	GATC	3 cut(s)	523, 808, 957
BspACI	CCGC	1 cut(s)	660
BspANI	GGCC	3 cut(s)	263, 332, 663
BspCNI	CTCAG	1 cut(s)	337
BspEI	TCCGGA	1 cut(s)	846
BspLI	GGNNCC	1 cut(s)	64
BspMI	ACCTGC	1 cut(s)	218
BspPI	GGATC	3 cut(s)	531, 803, 965
BspQI	GCTCTTC	1 cut(s)	529
BssECI	CCNNGG	4 cut(s)	55, 146, 546, 664
BssMI	GATC	3 cut(s)	523, 808, 957
Bst2UI	CCWGG	3 cut(s)	147, 548, 665
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	4 cut(s)	449, 529, 576, 827
BstC8I	GCNNGC	2 cut(s)	687, 937
BstDEI	CTNAG	2 cut(s)	306, 345
BstDSI	CCRYGG	1 cut(s)	55
BstF5I	GGATG	8 cut(s)	196, 397, 427, 435, 466, 708, 733, 973
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	3 cut(s)	526, 811, 960
BstMBI	GATC	3 cut(s)	523, 808, 957
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 277, 407, 643
BstNI	CCWGG	3 cut(s)	147, 548, 665
BstNSI	RCATGY	1 cut(s)	641
BstSCI	CCNGG	3 cut(s)	145, 546, 663
BstSLI	GKGCMC	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	385
BstV2I	GAAGAC	1 cut(s)	308
BstX2I	RGATCY	2 cut(s)	523, 808
BstYI	RGATCY	2 cut(s)	523, 808
BsuRI	GGCC	3 cut(s)	263, 332, 663
BtgI	CCRYGG	1 cut(s)	55
BtsCI	GGATG	8 cut(s)	196, 397, 427, 435, 466, 708, 733, 973
BveI	ACCTGC	1 cut(s)	218
Cac8I	GCNNGC	2 cut(s)	687, 937
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	62
Csp6I	GTAC	3 cut(s)	542, 650, 787
CviAII	CATG	4 cut(s)	81, 638, 723, 964
CviQI	GTAC	3 cut(s)	542, 650, 787
DdeI	CTNAG	2 cut(s)	306, 345
DpnI	GATC	3 cut(s)	525, 810, 959
DpnII	GATC	3 cut(s)	523, 808, 957
Eam1104I	CTCTTC	4 cut(s)	449, 529, 576, 827
EarI	CTCTTC	4 cut(s)	449, 529, 576, 827
Eco32I	GATATC	1 cut(s)	622
Eco47I	GGWCC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	430
Eco88I	CYCGRG	1 cut(s)	387
EcoO109I	RGGNCCY	1 cut(s)	62
EcoRI	GAATTC	1 cut(s)	139
EcoRII	CCWGG	3 cut(s)	145, 546, 663
EcoRV	GATATC	1 cut(s)	622
FaeI	CATG	4 cut(s)	84, 641, 726, 967
FalI	AAGNNNNNCTT	2 cut(s)	863, 895
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	4 cut(s)	80, 637, 722, 963
Fnu4HI	GCNGC	2 cut(s)	399, 661
FokI	GGATG	8 cut(s)	203, 404, 422, 434, 453, 715, 740, 980
Fsp4HI	GCNGC	2 cut(s)	399, 661
FspBI	CTAG	2 cut(s)	381, 411
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	2 cut(s)	399, 661
GsaI	CCCAGC	1 cut(s)	171
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	3 cut(s)	263, 332, 663
HapII	CCGG	4 cut(s)	27, 643, 847, 955
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	4 cut(s)	84, 641, 726, 967
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	4 cut(s)	432, 482, 556, 894
HpaII	CCGG	4 cut(s)	27, 643, 847, 955
HphI	GGTGA	2 cut(s)	218, 745
Hpy166II	GTNNAC	3 cut(s)	52, 481, 650
Hpy188I	TCNGA	5 cut(s)	159, 346, 366, 555, 813
Hpy188III	TCNNGA	8 cut(s)	389, 470, 560, 700, 804, 847, 868, 949
Hpy8I	GTNNAC	3 cut(s)	52, 481, 650
HpyAV	CCTTC	3 cut(s)	156, 314, 449
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	5 cut(s)	52, 227, 500, 598, 768
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 277, 407, 643
HpyF3I	CTNAG	2 cut(s)	306, 345
Hsp92II	CATG	4 cut(s)	84, 641, 726, 967
HspAI	GCGC	1 cut(s)	72
Kpn2I	TCCGGA	1 cut(s)	846
Kzo9I	GATC	3 cut(s)	523, 808, 957
LguI	GCTCTTC	1 cut(s)	529
LmnI	GCTCC	1 cut(s)	973
Lsp1109I	GCAGC	1 cut(s)	385
LweI	GCATC	2 cut(s)	585, 973
MaeI	CTAG	2 cut(s)	381, 411
MalI	GATC	3 cut(s)	525, 810, 959
MboI	GATC	3 cut(s)	523, 808, 957
MboII	GAAGA	9 cut(s)	171, 313, 436, 546, 593, 604, 616, 619, 844
MflI	RGATCY	2 cut(s)	523, 808
MhlI	GDGCHC	2 cut(s)	39, 54
MluCI	AATT	2 cut(s)	139, 615
MlyI	GAGTC	3 cut(s)	441, 476, 550
MmeI	TCCRAC	1 cut(s)	836
MroI	TCCGGA	1 cut(s)	846
MseI	TTAA	2 cut(s)	587, 1000
MslI	CAYNNNNRTG	3 cut(s)	374, 636, 968
MspI	CCGG	4 cut(s)	27, 643, 847, 955
MspR9I	CCNGG	3 cut(s)	147, 548, 665
Mva1269I	GAATGC	1 cut(s)	246
MvaI	CCWGG	3 cut(s)	147, 548, 665
MwoI	GCNNNNNNNGC	4 cut(s)	173, 277, 407, 643
NdeII	GATC	3 cut(s)	523, 808, 957
NlaIII	CATG	4 cut(s)	84, 641, 726, 967
NlaIV	GGNNCC	1 cut(s)	64
NspI	RCATGY	1 cut(s)	641
PciSI	GCTCTTC	1 cut(s)	529
PctI	GAATGC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	894
PkrI	GCNGC	2 cut(s)	400, 662
PleI	GAGTC	3 cut(s)	440, 476, 550
PpsI	GAGTC	3 cut(s)	440, 476, 550
PpuMI	RGGWCCY	1 cut(s)	62
Psp5II	RGGWCCY	1 cut(s)	62
Psp6I	CCWGG	3 cut(s)	145, 546, 663
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	3 cut(s)	145, 546, 663
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	62
PspPPI	RGGWCCY	1 cut(s)	62
PsuI	RGATCY	2 cut(s)	523, 808
RsaI	GTAC	3 cut(s)	543, 651, 788
RsaNI	GTAC	3 cut(s)	542, 650, 787
RseI	CAYNNNNRTG	3 cut(s)	374, 636, 968
SapI	GCTCTTC	1 cut(s)	529
SaqAI	TTAA	2 cut(s)	587, 1000
SatI	GCNGC	2 cut(s)	399, 661
Sau3AI	GATC	3 cut(s)	523, 808, 957
Sau96I	GGNCC	1 cut(s)	62
SchI	GAGTC	3 cut(s)	441, 476, 550
ScrFI	CCNGG	3 cut(s)	147, 548, 665
SduI	GDGCHC	2 cut(s)	39, 54
SetI	ASST	8 cut(s)	226, 232, 312, 459, 519, 687, 944, 978
SfaNI	GCATC	2 cut(s)	585, 973
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	3 cut(s)	374, 636, 968
SmlI	CTYRAG	2 cut(s)	38, 353
SmoI	CTYRAG	2 cut(s)	38, 353
Sse9I	AATT	2 cut(s)	139, 615
SsiI	CCGC	1 cut(s)	660
SspMI	CTAG	2 cut(s)	381, 411
StyD4I	CCNGG	3 cut(s)	145, 546, 663
TaaI	ACNGT	1 cut(s)	56
TasI	AATT	2 cut(s)	139, 615
TatI	WGTACW	1 cut(s)	649
TauI	GCSGC	1 cut(s)	663
TfiI	GAWTC	1 cut(s)	894
Tru1I	TTAA	2 cut(s)	587, 1000
Tru9I	TTAA	2 cut(s)	587, 1000
TseI	GCWGC	1 cut(s)	398
TspDTI	ATGAA	2 cut(s)	455, 845
VneI	GTGCAC	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	1 cut(s)	641
XspI	CTAG	2 cut(s)	381, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.