Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004061

Physical Location & Seq

Genomic Coordinates Reverse (-)

34702144 .. 34705642

Gene Structure 3499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g41270.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGTGGAGGAGTTGTGGGTGGAGAGTGGTCAAGGATTTGGTGCACCATGGAAGACCCAGAAGCCAAAACCCATGTGGTGTGTTGGGTTTGAGGCGTTTTGGGAATGAGGAACAATGTGGGGTTTTGGATTCTGGTTGGAATTTTCAGAGGAGGGCTGGGTTTGCTGCTGCTGGTGGGGGTGGTGATGGTGAGGGTGAGAAGATGAGTAAAGGTGCAGGTGGGGGAGGACTGCCTATTAGTTTTGGGGAGGCAAAGAGGCTGATGAGGCTTGTGAATGTGGAGGCTTTGAAGACCAAGCTTGGGACTGAAGGGAAAGAGGCTATTCCTTATAATGATTTGCTTGAGGCTTGTCAGAGCATTGGTGTGGCTAGATCTAAGGAGGAGGCTGCTGCTTTTGCTAGGGTGTTGGATGAGGCTGGAGTCATTCTTCTCTTCAGGGATAAGGTTCTGCTTCATCCTGATAGGGTTGTGGATCTGGTTAGAAAAGCAGTACCCCTTGCCCTGACTCCTGATAATGACCCTGTGTGGGAAGAGTTAAAGAAGATGCAAGAGAAGAAGATTGAAATTGATATCTTGGCACATAAGCATGTCCGGCGTGTACTCTGGGGTGGCCTGGGGTTGATCACATCACAGCTCGCCCTCTTTTTCAGGATGACATATTGGGACTTCTCATGGGATGTCGTGGAGCCACTTGCGTATTTCACCACAACGACTTGCATTGGCATAGGCTATGCGTACTTTTTGGTTACTTCAAGAGATCCGACTTACCAAGACTTGATGAAGAAGCTTTTTCTCAGGAAGCAGAGGAAACTGATTAAGAAACATAACTTTGATGTTGAGAGATTCAGGGAGATACAGAGAAAATACGACACAACTCTACACGCCAGCACCTCAATCAAGAATCGGTATGGCATGGATGTGGAGCTGGACGATGCTTTACATAGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015267 GO:0015291 GO:0015292 GO:0015318 GO:0022803 GO:0022804 GO:0022838 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04020 ko04218 ko04621 map04020 map04218 map04621

Pfam Domains

Protein Families

MCU

Protein Analysis

317

Amino Acids

35.78

Weight (kDa)

9.17

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCU	PF04678	161 - 277	1.2e-42	Mitochondrial calcium uniporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09575 AT1G09575 AT1G57610 AT1G57610 AT1G57610 AT1G57610
fragaria_vesca	FvH4_3g41270 FvH4_3g41270
malus_domestica	MD03G1046100.v1.1 MD11G1048400.v1.1
prunus_persica	Prupe.6G037400_v2.0.a1 Prupe.6G037400_v2.0.a1 Prupe.6G037400_v2.0.a1
pyrus_communis	pycom03g03630
rosa_chinensis	RchiOBHm_Chr5g0074071
rosa_laevigata	RLG00000036451
rosa_multiflora	Rmu_co8305125.1_g000001 Rmu_sc0009296.1_g000014 Rmu_sc0011497.1_g000001 Rmu_sc0031541.1_g000001 Rmu_sc0036241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007310 Rroxscaffold_6G00421610
rosa_rugosa	Rorug05G0429000
rosa_samantha	Rh5AG486600 Rh5BG506900 Rh5CG530400 Rh5DG519300 Rh6BG292500 Rh7AG390400 Rh7BG274100 Rh7CG409400
rosa_wichuraiana	Rw5G045160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	330
AarI	CACCTGC	1 cut(s)	206
Acc36I	ACCTGC	1 cut(s)	206
AclWI	GGATC	2 cut(s)	480, 752
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	2 cut(s)	327, 418
AfaI	GTAC	3 cut(s)	492, 600, 737
AfiI	CCNNNNNNNGG	2 cut(s)	300, 526
AgsI	TTSAA	3 cut(s)	289, 563, 753
AjnI	CCWGG	1 cut(s)	612
AluBI	AGCT	4 cut(s)	298, 634, 787, 925
AluI	AGCT	4 cut(s)	298, 634, 787, 925
Alw21I	GWGCWC	1 cut(s)	45
Alw44I	GTGCAC	1 cut(s)	41
AlwI	GGATC	2 cut(s)	480, 752
AoxI	GGCC	1 cut(s)	610
ApaLI	GTGCAC	1 cut(s)	41
ApeKI	GCWGC	4 cut(s)	164, 167, 386, 389
ApoI	RAATTY	1 cut(s)	139
AsuHPI	GGTGA	4 cut(s)	194, 200, 206, 694
BaeGI	GKGCMC	1 cut(s)	45
BbsI	GAAGAC	2 cut(s)	58, 296
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	4 cut(s)	151, 154, 373, 376
BccI	CCATC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	614
BclI	TGATCA	1 cut(s)	621
BfaI	CTAG	2 cut(s)	369, 399
BfuAI	ACCTGC	1 cut(s)	206
BglII	AGATCT	1 cut(s)	371
BisI	GCNGC	4 cut(s)	165, 168, 387, 390
BlsI	GCNGC	4 cut(s)	166, 169, 388, 391
Bme1390I	CCNGG	1 cut(s)	614
BmiI	GGNNCC	1 cut(s)	687
BmrFI	CCNGG	1 cut(s)	614
BmsI	GCATC	2 cut(s)	534, 922
BpiI	GAAGAC	2 cut(s)	58, 296
BpmI	CTGGAG	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	46, 613
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	300, 526
BseBI	CCWGG	1 cut(s)	614
BseDI	CCNNGG	2 cut(s)	46, 613
BseGI	GGATG	5 cut(s)	415, 454, 657, 682, 922
BseLI	CCNNNNNNNGG	2 cut(s)	300, 526
BseMII	CTCAG	1 cut(s)	808
BseRI	GAGGAG	3 cut(s)	22, 163, 395
BseSI	GKGCMC	1 cut(s)	45
BseXI	GCAGC	4 cut(s)	151, 154, 373, 376
BseYI	CCCAGC	1 cut(s)	155
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	612
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	592
BslFI	GGGAC	2 cut(s)	316, 677
BslI	CCNNNNNNNGG	2 cut(s)	300, 526
BsmFI	GGGAC	2 cut(s)	316, 677
BsnI	GGCC	1 cut(s)	612
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	4 cut(s)	371, 472, 621, 757
Bsp19I	CCATGG	1 cut(s)	46
BspANI	GGCC	1 cut(s)	612
BspCNI	CTCAG	1 cut(s)	807
BspLI	GGNNCC	1 cut(s)	687
BspMI	ACCTGC	1 cut(s)	206
BspPI	GGATC	2 cut(s)	480, 752
BssECI	CCNNGG	2 cut(s)	46, 613
BssMI	GATC	4 cut(s)	371, 472, 621, 757
BssT1I	CCWWGG	1 cut(s)	46
Bst2UI	CCWGG	1 cut(s)	614
Bst6I	CTCTTC	2 cut(s)	437, 525
BstC8I	GCNNGC	2 cut(s)	636, 886
BstDEI	CTNAG	2 cut(s)	375, 794
BstDSI	CCRYGG	1 cut(s)	46
BstF5I	GGATG	5 cut(s)	415, 454, 657, 682, 922
BstKTI	GATC	4 cut(s)	374, 475, 624, 760
BstMBI	GATC	4 cut(s)	371, 472, 621, 757
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 265, 395, 592
BstNI	CCWGG	1 cut(s)	614
BstNSI	RCATGY	1 cut(s)	590
BstSCI	CCNGG	1 cut(s)	612
BstSLI	GKGCMC	1 cut(s)	45
BstV1I	GCAGC	4 cut(s)	151, 154, 373, 376
BstV2I	GAAGAC	2 cut(s)	58, 296
BstX2I	RGATCY	3 cut(s)	371, 472, 757
BstYI	RGATCY	3 cut(s)	371, 472, 757
BsuRI	GGCC	1 cut(s)	612
BtgI	CCRYGG	1 cut(s)	46
BtsCI	GGATG	5 cut(s)	415, 454, 657, 682, 922
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	2 cut(s)	636, 886
Csp6I	GTAC	3 cut(s)	491, 599, 736
CviAII	CATG	5 cut(s)	47, 72, 587, 672, 913
CviQI	GTAC	3 cut(s)	491, 599, 736
DdeI	CTNAG	2 cut(s)	375, 794
DpnI	GATC	4 cut(s)	373, 474, 623, 759
DpnII	GATC	4 cut(s)	371, 472, 621, 757
Eam1104I	CTCTTC	2 cut(s)	437, 525
EarI	CTCTTC	2 cut(s)	437, 525
Eco130I	CCWWGG	1 cut(s)	46
Eco32I	GATATC	1 cut(s)	571
Eco57I	CTGAAG	2 cut(s)	327, 418
EcoRII	CCWGG	1 cut(s)	612
EcoRV	GATATC	1 cut(s)	571
EcoT14I	CCWWGG	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	46
FaeI	CATG	5 cut(s)	50, 75, 590, 675, 916
FaqI	GGGAC	2 cut(s)	316, 677
FatI	CATG	5 cut(s)	46, 71, 586, 671, 912
FbaI	TGATCA	1 cut(s)	621
Fnu4HI	GCNGC	4 cut(s)	165, 168, 387, 390
FokI	GGATG	5 cut(s)	422, 441, 664, 689, 929
Fsp4HI	GCNGC	4 cut(s)	165, 168, 387, 390
FspBI	CTAG	2 cut(s)	369, 399
GluI	GCNGC	4 cut(s)	165, 168, 387, 390
GsaI	CCCAGC	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	438
HaeIII	GGCC	1 cut(s)	612
HapII	CCGG	1 cut(s)	592
Hin1II	CATG	5 cut(s)	50, 75, 590, 675, 916
HindIII	AAGCTT	2 cut(s)	296, 785
HinfI	GANTC	5 cut(s)	128, 420, 505, 843, 901
HpaII	CCGG	1 cut(s)	592
HphI	GGTGA	4 cut(s)	194, 200, 206, 694
Hpy166II	GTNNAC	2 cut(s)	43, 599
Hpy188I	TCNGA	3 cut(s)	147, 354, 762
Hpy188III	TCNNGA	6 cut(s)	458, 509, 649, 753, 796, 898
Hpy8I	GTNNAC	2 cut(s)	43, 599
HpyAV	CCTTC	1 cut(s)	302
HpyCH4V	TGCA	4 cut(s)	43, 215, 547, 717
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 265, 395, 592
HpyF3I	CTNAG	2 cut(s)	375, 794
Hsp92II	CATG	5 cut(s)	50, 75, 590, 675, 916
Ksp22I	TGATCA	1 cut(s)	621
Kzo9I	GATC	4 cut(s)	371, 472, 621, 757
LmnI	GCTCC	2 cut(s)	685, 922
Lsp1109I	GCAGC	4 cut(s)	151, 154, 373, 376
LweI	GCATC	2 cut(s)	534, 922
MaeI	CTAG	2 cut(s)	369, 399
MaeIII	GTNAC	1 cut(s)	745
MalI	GATC	4 cut(s)	373, 474, 623, 759
MboI	GATC	4 cut(s)	371, 472, 621, 757
MflI	RGATCY	3 cut(s)	371, 472, 757
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	2 cut(s)	139, 564
MlyI	GAGTC	2 cut(s)	429, 499
MmeI	TCCRAC	3 cut(s)	116, 387, 785
MseI	TTAA	3 cut(s)	536, 816, 949
MslI	CAYNNNNRTG	3 cut(s)	362, 585, 917
MspI	CCGG	1 cut(s)	592
MspR9I	CCNGG	1 cut(s)	614
MvaI	CCWGG	1 cut(s)	614
MwoI	GCNNNNNNNGC	4 cut(s)	161, 265, 395, 592
NcoI	CCATGG	1 cut(s)	46
NdeII	GATC	4 cut(s)	371, 472, 621, 757
NlaIII	CATG	5 cut(s)	50, 75, 590, 675, 916
NlaIV	GGNNCC	1 cut(s)	687
NspI	RCATGY	1 cut(s)	590
PaqCI	CACCTGC	1 cut(s)	206
PfeI	GAWTC	3 cut(s)	128, 843, 901
PkrI	GCNGC	4 cut(s)	166, 169, 388, 391
PleI	GAGTC	2 cut(s)	428, 499
PpsI	GAGTC	2 cut(s)	428, 499
PsiI	TTATAA	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	612
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	612
PspN4I	GGNNCC	1 cut(s)	687
PsuI	RGATCY	3 cut(s)	371, 472, 757
RsaI	GTAC	3 cut(s)	492, 600, 737
RsaNI	GTAC	3 cut(s)	491, 599, 736
RseI	CAYNNNNRTG	3 cut(s)	362, 585, 917
SaqAI	TTAA	3 cut(s)	536, 816, 949
SatI	GCNGC	4 cut(s)	165, 168, 387, 390
Sau3AI	GATC	4 cut(s)	371, 472, 621, 757
SchI	GAGTC	2 cut(s)	429, 499
ScrFI	CCNGG	1 cut(s)	614
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	8 cut(s)	214, 220, 300, 447, 636, 789, 893, 927
SfaNI	GCATC	2 cut(s)	534, 922
SmiMI	CAYNNNNRTG	3 cut(s)	362, 585, 917
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	139, 564
SspMI	CTAG	2 cut(s)	369, 399
StyD4I	CCNGG	1 cut(s)	612
StyI	CCWWGG	1 cut(s)	46
TasI	AATT	2 cut(s)	139, 564
TatI	WGTACW	1 cut(s)	598
TfiI	GAWTC	3 cut(s)	128, 843, 901
Tru1I	TTAA	3 cut(s)	536, 816, 949
Tru9I	TTAA	3 cut(s)	536, 816, 949
TseI	GCWGC	4 cut(s)	164, 167, 386, 389
TspDTI	ATGAA	2 cut(s)	443, 794
VneI	GTGCAC	1 cut(s)	41
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	1 cut(s)	590
XcmI	CCANNNNNNNNNTGG	1 cut(s)	71
XspI	CTAG	2 cut(s)	369, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.