Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004061

Physical Location & Seq

Genomic Coordinates Forward (+)

42729283 .. 42734517

Gene Structure 5235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00421610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCAGCAGATGCAGCGAGGGAGGCCGCAGGTCGTGCGGCGATGGCTTGGGGCTGCCGGCCGGTGTGCGGCGCGGGCTGCCGGGAAGATGGTTGGAGGCCGGAGCGGTGTGCGCAGATGCGATGTGCGGTGGATGCGTAGTGAGGCTGCGGCTTTGCGGCGGGAGGCTGCGCGCAGTTTTCTTGCTATGTTTATAACAAACACTGTTGGAGATGCTCTAACTTCTAAAGCTATTAGATATGCGTTGCAATATCACGGCTATATGGGTGCAGTTTGGTCTGTAGAAGCAAATATCATACAGTTTGTCTGGAGTGAGTGGAGAACAACCGGTGTTGTGCTCAAGGATTTGGTGCACCATGCAGGACCCAAAAGCCAAAACCCATGTGCTGTGTTTGGTTTGAGGCGTTTTGGAAATGATGAGGAACAATGTGGGTTTTTGAACTCTCCCGGAAAGTTTCGGAGAAGGGCCGGGTTTGCTTCTTCCGCCGGGGATGTCAATGGGGAGGGTGAGAATATCGGTAAAGGTGCAGGTTTGGGAGGAATGCCCATAAGTTTTGGGGAGGCCAAGAGGCTTATGAGGCTTGTGAATGTGGAGGCTTTGAAGACTAAGCTTGGGACGAAGGGAAAGAAGCCATTCCTTATTCCGAGTTGCTTGAGGCTTGTCGGAGCATTGGTGTGGCTAGAAGAATGGATTGATCCGAAAGGGAAGATGGGGAGGAGATGGGCTCTAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015267 GO:0015291 GO:0015292 GO:0015318 GO:0022803 GO:0022804 GO:0022838 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04020 ko04218 ko04621 map04020 map04218 map04621

Pfam Domains

Protein Families

MCU

Protein Analysis

244

Amino Acids

26.84

Weight (kDa)

10.78

Isoelectric Point (pI)

57.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09575 AT1G09575 AT1G57610 AT1G57610 AT1G57610 AT1G57610
fragaria_vesca	FvH4_3g41270 FvH4_3g41270
malus_domestica	MD03G1046100.v1.1 MD11G1048400.v1.1
prunus_persica	Prupe.6G037400_v2.0.a1 Prupe.6G037400_v2.0.a1 Prupe.6G037400_v2.0.a1
pyrus_communis	pycom03g03630
rosa_chinensis	RchiOBHm_Chr5g0074071
rosa_laevigata	RLG00000036451
rosa_multiflora	Rmu_co8305125.1_g000001 Rmu_sc0009296.1_g000014 Rmu_sc0011497.1_g000001 Rmu_sc0031541.1_g000001 Rmu_sc0036241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007310 Rroxscaffold_6G00421610
rosa_rugosa	Rorug05G0429000
rosa_samantha	Rh5AG486600 Rh5BG506900 Rh5CG530400 Rh5DG519300 Rh6BG292500 Rh7AG390400 Rh7BG274100 Rh7CG409400
rosa_wichuraiana	Rw5G045160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
Acc16I	TGCGCA	1 cut(s)	113
Acc36I	ACCTGC	2 cut(s)	19, 518
AccBSI	CCGCTC	1 cut(s)	105
AccII	CGCG	2 cut(s)	73, 172
AclWI	GGATC	1 cut(s)	689
AcoI	YGGCCR	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgeI	ACCGGT	1 cut(s)	326
AgsI	TTSAA	2 cut(s)	439, 601
AluBI	AGCT	2 cut(s)	230, 610
AluI	AGCT	2 cut(s)	230, 610
Alw21I	GWGCWC	2 cut(s)	339, 354
Alw44I	GTGCAC	1 cut(s)	350
AlwI	GGATC	1 cut(s)	689
AoxI	GGCC	5 cut(s)	23, 58, 97, 465, 561
ApaLI	GTGCAC	1 cut(s)	350
ApeKI	GCWGC	6 cut(s)	4, 13, 53, 77, 146, 167
AsiGI	ACCGGT	1 cut(s)	326
Asp700I	GAANNNNTTC	1 cut(s)	632
AspLEI	GCGC	4 cut(s)	73, 114, 172, 174
AspS9I	GGNCC	2 cut(s)	362, 465
AsuC2I	CCSGG	4 cut(s)	82, 447, 469, 487
AsuHPI	GGTGA	1 cut(s)	518
AvaII	GGWCC	1 cut(s)	362
BaeGI	GKGCMC	1 cut(s)	354
BanII	GRGCYC	1 cut(s)	727
BbsI	GAAGAC	1 cut(s)	608
Bbv12I	GWGCWC	2 cut(s)	339, 354
BbvI	GCAGC	6 cut(s)	16, 25, 40, 64, 133, 154
BccI	CCATC	4 cut(s)	36, 82, 703, 714
BceAI	ACGGC	1 cut(s)	271
BcnI	CCSGG	4 cut(s)	82, 447, 469, 487
BfaI	CTAG	2 cut(s)	680, 728
BfmI	CTRYAG	1 cut(s)	279
BfuAI	ACCTGC	2 cut(s)	19, 518
Bme1390I	CCNGG	4 cut(s)	82, 447, 469, 487
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	2 cut(s)	362, 465
BmiI	GGNNCC	1 cut(s)	364
BmrFI	CCNGG	4 cut(s)	82, 447, 469, 487
BmsI	GCATC	3 cut(s)	107, 123, 202
BpiI	GAAGAC	1 cut(s)	608
BplI	GAGNNNNNCTC	1 cut(s)	709
BpmI	CTGGAG	1 cut(s)	328
BpuEI	CTTGAG	2 cut(s)	323, 673
BpuMI	CCSGG	4 cut(s)	82, 447, 469, 487
BsaJI	CCNNGG	1 cut(s)	486
BsaWI	WCCGGW	1 cut(s)	326
BsaXI	ACNNNNNCTCC	2 cut(s)	657, 687
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse118I	RCCGGY	3 cut(s)	56, 60, 326
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	2 cut(s)	138, 496
BseLI	CCNNNNNNNGG	1 cut(s)	67
BsePI	GCGCGC	1 cut(s)	170
BseRI	GAGGAG	1 cut(s)	730
BseSI	GKGCMC	1 cut(s)	354
BseX3I	CGGCCG	1 cut(s)	58
BseXI	GCAGC	6 cut(s)	16, 25, 40, 64, 133, 154
BsgI	GTGCAG	2 cut(s)	288, 546
Bsh1236I	CGCG	2 cut(s)	73, 172
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	5 cut(s)	25, 60, 99, 467, 563
BshTI	ACCGGT	1 cut(s)	326
BsiEI	CGRYCG	1 cut(s)	61
BsiHKAI	GWGCWC	2 cut(s)	339, 354
BsiSI	CCGG	8 cut(s)	57, 61, 81, 100, 327, 447, 468, 486
BslFI	GGGAC	1 cut(s)	628
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	628
BsmI	GAATGC	1 cut(s)	546
BsnI	GGCC	5 cut(s)	25, 60, 99, 467, 563
Bsp1286I	GDGCHC	3 cut(s)	339, 354, 727
Bsp143I	GATC	1 cut(s)	694
BspANI	GGCC	5 cut(s)	25, 60, 99, 467, 563
BspFNI	CGCG	2 cut(s)	73, 172
BspLI	GGNNCC	1 cut(s)	364
BspMI	ACCTGC	2 cut(s)	19, 518
BspPI	GGATC	1 cut(s)	689
BsrBI	CCGCTC	1 cut(s)	105
BsrFI	RCCGGY	3 cut(s)	56, 60, 326
BssAI	RCCGGY	3 cut(s)	56, 60, 326
BssECI	CCNNGG	1 cut(s)	486
BssHII	GCGCGC	1 cut(s)	170
BssMI	GATC	1 cut(s)	694
Bst4CI	ACNGT	2 cut(s)	205, 300
BstAPI	GCANNNNNTGC	2 cut(s)	10, 34
BstC8I	GCNNGC	3 cut(s)	58, 75, 172
BstDEI	CTNAG	1 cut(s)	606
BstF5I	GGATG	2 cut(s)	138, 496
BstFNI	CGCG	2 cut(s)	73, 172
BstHHI	GCGC	4 cut(s)	73, 114, 172, 174
BstKTI	GATC	1 cut(s)	697
BstMBI	GATC	1 cut(s)	694
BstMCI	CGRYCG	1 cut(s)	61
BstSCI	CCNGG	4 cut(s)	80, 445, 467, 485
BstSFI	CTRYAG	1 cut(s)	279
BstSLI	GKGCMC	1 cut(s)	354
BstUI	CGCG	2 cut(s)	73, 172
BstV1I	GCAGC	6 cut(s)	16, 25, 40, 64, 133, 154
BstV2I	GAAGAC	1 cut(s)	608
BstZI	CGGCCG	1 cut(s)	58
BsuRI	GGCC	5 cut(s)	25, 60, 99, 467, 563
BtgZI	GCGATG	2 cut(s)	55, 135
BtsCI	GGATG	2 cut(s)	138, 496
BtsIMutI	CAGTG	1 cut(s)	201
BveI	ACCTGC	2 cut(s)	19, 518
Cac8I	GCNNGC	3 cut(s)	58, 75, 172
CfoI	GCGC	4 cut(s)	73, 114, 172, 174
Cfr10I	RCCGGY	3 cut(s)	56, 60, 326
Cfr13I	GGNCC	2 cut(s)	362, 465
CspAI	ACCGGT	1 cut(s)	326
CviAII	CATG	2 cut(s)	356, 381
DdeI	CTNAG	1 cut(s)	606
DpnI	GATC	1 cut(s)	696
DpnII	GATC	1 cut(s)	694
EaeI	YGGCCR	1 cut(s)	58
EagI	CGGCCG	1 cut(s)	58
EciI	GGCGGA	1 cut(s)	472
EclXI	CGGCCG	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	727
Eco47I	GGWCC	1 cut(s)	362
Eco52I	CGGCCG	1 cut(s)	58
EcoO109I	RGGNCCY	1 cut(s)	362
EcoT38I	GRGCYC	1 cut(s)	727
FaeI	CATG	2 cut(s)	359, 384
FaqI	GGGAC	1 cut(s)	628
FatI	CATG	2 cut(s)	355, 380
FauI	CCCGC	2 cut(s)	66, 153
FokI	GGATG	2 cut(s)	145, 503
FriOI	GRGCYC	1 cut(s)	727
FspBI	CTAG	2 cut(s)	680, 728
FspI	TGCGCA	1 cut(s)	113
GlaI	GCGC	4 cut(s)	72, 113, 171, 173
GsuI	CTGGAG	1 cut(s)	328
HaeIII	GGCC	5 cut(s)	25, 60, 99, 467, 563
HapII	CCGG	8 cut(s)	57, 61, 81, 100, 327, 447, 468, 486
HhaI	GCGC	4 cut(s)	73, 114, 172, 174
Hin1II	CATG	2 cut(s)	359, 384
Hin6I	GCGC	4 cut(s)	71, 112, 170, 172
HinP1I	GCGC	4 cut(s)	71, 112, 170, 172
HindIII	AAGCTT	1 cut(s)	608
HpaII	CCGG	8 cut(s)	57, 61, 81, 100, 327, 447, 468, 486
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	4 cut(s)	459, 645, 665, 699
Hpy188III	TCNNGA	1 cut(s)	307
Hpy8I	GTNNAC	1 cut(s)	352
HpyAV	CCTTC	2 cut(s)	456, 613
HpyCH4III	ACNGT	2 cut(s)	205, 300
HpyCH4V	TGCA	7 cut(s)	4, 13, 247, 269, 352, 359, 527
HpyF3I	CTNAG	1 cut(s)	606
Hsp92II	CATG	2 cut(s)	359, 384
HspAI	GCGC	4 cut(s)	71, 112, 170, 172
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	694
LmnI	GCTCC	2 cut(s)	102, 665
Lsp1109I	GCAGC	6 cut(s)	16, 25, 40, 64, 133, 154
LweI	GCATC	3 cut(s)	107, 123, 202
MaeI	CTAG	2 cut(s)	680, 728
MalI	GATC	1 cut(s)	696
MbiI	CCGCTC	1 cut(s)	105
MboI	GATC	1 cut(s)	694
MboII	GAAGA	5 cut(s)	97, 471, 613, 695, 718
MhlI	GDGCHC	3 cut(s)	339, 354, 727
MmeI	TCCRAC	3 cut(s)	73, 187, 643
MroNI	GCCGGC	1 cut(s)	56
MroXI	GAANNNNTTC	1 cut(s)	632
MslI	CAYNNNNRTG	1 cut(s)	673
MspI	CCGG	8 cut(s)	57, 61, 81, 100, 327, 447, 468, 486
MspR9I	CCNGG	4 cut(s)	82, 447, 469, 487
Mva1269I	GAATGC	1 cut(s)	546
MvnI	CGCG	2 cut(s)	73, 172
NaeI	GCCGGC	1 cut(s)	58
NciI	CCSGG	4 cut(s)	82, 447, 469, 487
NdeII	GATC	1 cut(s)	694
NgoMIV	GCCGGC	1 cut(s)	56
NlaIII	CATG	2 cut(s)	359, 384
NlaIV	GGNNCC	1 cut(s)	364
NsbI	TGCGCA	1 cut(s)	113
PauI	GCGCGC	1 cut(s)	170
PctI	GAATGC	1 cut(s)	546
PdiI	GCCGGC	1 cut(s)	58
PdmI	GAANNNNTTC	1 cut(s)	632
PfoI	TCCNGGA	1 cut(s)	445
PinAI	ACCGGT	1 cut(s)	326
PpuMI	RGGWCCY	1 cut(s)	362
PsiI	TTATAA	1 cut(s)	194
Psp5II	RGGWCCY	1 cut(s)	362
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	2 cut(s)	362, 465
PspPPI	RGGWCCY	1 cut(s)	362
PteI	GCGCGC	1 cut(s)	170
RseI	CAYNNNNRTG	1 cut(s)	673
Sau3AI	GATC	1 cut(s)	694
Sau96I	GGNCC	2 cut(s)	362, 465
ScrFI	CCNGG	4 cut(s)	82, 447, 469, 487
SduI	GDGCHC	3 cut(s)	339, 354, 727
SetI	ASST	5 cut(s)	33, 232, 526, 532, 612
SfaNI	GCATC	3 cut(s)	107, 123, 202
SfcI	CTRYAG	1 cut(s)	279
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	673
SmlI	CTYRAG	2 cut(s)	338, 652
SmoI	CTYRAG	2 cut(s)	338, 652
SspMI	CTAG	2 cut(s)	680, 728
StyD4I	CCNGG	4 cut(s)	80, 445, 467, 485
TaaI	ACNGT	2 cut(s)	205, 300
TauI	GCSGC	5 cut(s)	28, 40, 71, 152, 160
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	6 cut(s)	4, 13, 53, 77, 146, 167
TspRI	CASTG	1 cut(s)	208
VneI	GTGCAC	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	632
XspI	CTAG	2 cut(s)	680, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.