AT1G09580

Emp24 gp25L p24 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008689
Physical Location & Seq
Forward (+)
3104492 .. 3106366
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09580.1

Sequence Viewer

Length: 654 bp
ATGAAGATGACTGCTAAGATGCGCCGTGAATTCCCGACGGCGTTCCTTCTCTTGTTTCTGGTTCCGGTGATGATTCCGGTCGGTGAGGCTGTATGGCTAGATGTGCCTCCCACCGGAACAAAGTGTGTATCTGAAGAAATCCAGAGCAATGTCGTCGTTTTGGCTGATTACCTCATCATCTCCGAGGATCACGAGGTCATGCCCACTATATCCGTCAAGGTGACATCCCCATATGGCAACAATCTGCACAATATGGAAAACGTAACGCATGGCCAATTTGCATTTACAACCCAAGAATCAGGGAACTACTTGGCGTGCTTTTGGGCAGATGAAAAGAGTCACGGAAACAAAAATGTTAGCATCAACATTGACTGGAGAACTGGAATCGCTGCTAAGGATTGGGCCTCTATTGCTAAGAAAGAGAAGATCGAGGGTGTGGAGCTGGAGATCAGGAAACTCGAAGGCGCAGTCGAAGCCATCCATGAAAATATACTCTACCTAAGAAACAGAGAAGCAGACATGAGGACAATGAGTGAGAAAACGAACTCGCGGGTGGCTTGGTACAGTATAATGTCACTAGGTGTTTGCATTGCTGTCTCTGGTTTCCAGGTACTCTACTTGAAGCAGTACTTTGAGAAGAAGAAGCTTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EMP24_GP25L

Protein Analysis

217

Amino Acids

24.61

Weight (kDa)

6.23

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP24_GP25L PF01105 31 - 212 4.1e-51 emp24/gp25L/p24 family/GOLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 550
AciI CCGC 1 cut(s) 550
AclWI GGATC 1 cut(s) 195
AcoI YGGCCR 1 cut(s) 271
AcsI RAATTY 1 cut(s) 29
AcuI CTGAAG 1 cut(s) 153
AdeI CACNNNGTG 1 cut(s) 581
AfaI GTAC 3 cut(s) 563, 612, 629
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 1 cut(s) 622
AjnI CCWGG 1 cut(s) 606
AluBI AGCT 2 cut(s) 442, 646
AluI AGCT 2 cut(s) 442, 646
Alw26I GTCTC 1 cut(s) 601
AlwI GGATC 1 cut(s) 195
AoxI GGCC 2 cut(s) 271, 402
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 1 cut(s) 29
ArsI GACNNNNNNTTYG 2 cut(s) 453, 485
AspLEI GCGC 2 cut(s) 24, 467
AspS9I GGNCC 1 cut(s) 402
AsuHPI GGTGA 3 cut(s) 79, 95, 232
BalI TGGCCA 1 cut(s) 273
BauI CACGAG 1 cut(s) 191
BbvI GCAGC 1 cut(s) 376
BccI CCATC 1 cut(s) 485
BceAI ACGGC 2 cut(s) 9, 54
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BciT130I CCWGG 1 cut(s) 608
BcoDI GTCTC 1 cut(s) 601
BfaI CTAG 2 cut(s) 98, 578
BisI GCNGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 391
BmcAI AGTACT 1 cut(s) 629
Bme1390I CCNGG 1 cut(s) 608
BmgT120I GGNCC 1 cut(s) 402
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 608
BmsI GCATC 2 cut(s) 9, 369
BpmI CTGGAG 2 cut(s) 394, 464
Bpu10I CCTNAGC 1 cut(s) 393
BsaJI CCNNGG 1 cut(s) 183
BsaWI WCCGGW 3 cut(s) 64, 76, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse1I ACTGG 2 cut(s) 377, 385
Bse3DI GCAATG 2 cut(s) 154, 588
BseBI CCWGG 1 cut(s) 608
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 2 cut(s) 224, 477
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMI GCAATG 2 cut(s) 154, 588
BseNI ACTGG 2 cut(s) 377, 385
BseXI GCAGC 1 cut(s) 376
BsgI GTGCAG 1 cut(s) 230
Bsh1236I CGCG 1 cut(s) 550
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 2 cut(s) 273, 404
BsiEI CGRYCG 1 cut(s) 81
BsiSI CCGG 3 cut(s) 65, 77, 114
BslI CCNNNNNNNGG 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 601
BsnI GGCC 2 cut(s) 273, 404
Bsp143I GATC 3 cut(s) 187, 426, 447
BspACI CCGC 1 cut(s) 550
BspANI GGCC 2 cut(s) 273, 404
BspFNI CGCG 1 cut(s) 550
BspLI GGNNCC 1 cut(s) 63
BspPI GGATC 1 cut(s) 195
BsrDI GCAATG 2 cut(s) 154, 588
BsrI ACTGG 2 cut(s) 377, 385
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 3 cut(s) 187, 426, 447
BssSI CACGAG 1 cut(s) 191
Bst2BI CACGAG 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 608
Bst4CI ACNGT 1 cut(s) 566
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 4 cut(s) 15, 393, 414, 500
BstF5I GGATG 2 cut(s) 224, 477
BstFNI CGCG 1 cut(s) 550
BstHHI GCGC 2 cut(s) 24, 467
BstKTI GATC 3 cut(s) 190, 429, 450
BstMAI GTCTC 1 cut(s) 601
BstMBI GATC 3 cut(s) 187, 426, 447
BstMCI CGRYCG 1 cut(s) 81
BstMWI GCNNNNNNNGC 3 cut(s) 103, 410, 473
BstNI CCWGG 1 cut(s) 608
BstSCI CCNGG 1 cut(s) 606
BstUI CGCG 1 cut(s) 550
BstV1I GCAGC 1 cut(s) 376
BsuRI GGCC 2 cut(s) 273, 404
BtsCI GGATG 2 cut(s) 224, 477
Cac8I GCNNGC 1 cut(s) 316
CfoI GCGC 2 cut(s) 24, 467
Cfr13I GGNCC 1 cut(s) 402
Csp6I GTAC 3 cut(s) 562, 611, 628
CviAII CATG 4 cut(s) 199, 269, 482, 520
CviJI RGCY 9 cut(s) 89, 97, 164, 273, 404, 442, 476, 557, 646
CviKI_1 RGCY 9 cut(s) 89, 97, 164, 273, 404, 442, 476, 557, 646
CviQI GTAC 3 cut(s) 562, 611, 628
DdeI CTNAG 4 cut(s) 15, 393, 414, 500
DpnI GATC 3 cut(s) 189, 428, 449
DpnII GATC 3 cut(s) 187, 426, 447
DraIII CACNNNGTG 1 cut(s) 581
EaeI YGGCCR 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 153
EcoRI GAATTC 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 606
FaeI CATG 4 cut(s) 202, 272, 485, 523
FalI AAGNNNNNCTT 2 cut(s) 614, 646
FatI CATG 4 cut(s) 198, 268, 481, 519
FauI CCCGC 1 cut(s) 543
FauNDI CATATG 1 cut(s) 232
Fnu4HI GCNGC 1 cut(s) 390
FokI GGATG 2 cut(s) 211, 464
Fsp4HI GCNGC 1 cut(s) 390
FspBI CTAG 2 cut(s) 98, 578
GlaI GCGC 2 cut(s) 23, 466
GluI GCNGC 1 cut(s) 390
GsuI CTGGAG 2 cut(s) 394, 464
HaeIII GGCC 2 cut(s) 273, 404
HapII CCGG 3 cut(s) 65, 77, 114
HhaI GCGC 2 cut(s) 24, 467
Hin1II CATG 4 cut(s) 202, 272, 485, 523
Hin6I GCGC 2 cut(s) 22, 465
HinP1I GCGC 2 cut(s) 22, 465
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 4 cut(s) 73, 296, 337, 384
HpaII CCGG 3 cut(s) 65, 77, 114
HphI GGTGA 3 cut(s) 79, 95, 232
Hpy188I TCNGA 2 cut(s) 133, 184
Hpy188III TCNNGA 4 cut(s) 34, 142, 191, 451
Hpy99I CGWCG 2 cut(s) 40, 158
HpyAV CCTTC 2 cut(s) 56, 455
HpyCH4III ACNGT 1 cut(s) 566
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 3 cut(s) 247, 281, 588
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 410, 473
HpyF3I CTNAG 4 cut(s) 15, 393, 414, 500
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 4 cut(s) 202, 272, 485, 523
HspAI GCGC 2 cut(s) 22, 465
Kzo9I GATC 3 cut(s) 187, 426, 447
LmnI GCTCC 1 cut(s) 439
Lsp1109I GCAGC 1 cut(s) 376
LweI GCATC 2 cut(s) 9, 369
MaeI CTAG 2 cut(s) 98, 578
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 4 cut(s) 220, 262, 338, 573
MalI GATC 3 cut(s) 189, 428, 449
MboI GATC 3 cut(s) 187, 426, 447
MboII GAAGA 5 cut(s) 16, 146, 436, 649, 652
MlsI TGGCCA 1 cut(s) 273
MluCI AATT 2 cut(s) 29, 275
MluNI TGGCCA 1 cut(s) 273
MlyI GAGTC 1 cut(s) 346
MnlI CCTC 8 cut(s) 79, 117, 178, 182, 187, 415, 424, 516
Mox20I TGGCCA 1 cut(s) 273
MscI TGGCCA 1 cut(s) 273
Msp20I TGGCCA 1 cut(s) 273
MspI CCGG 3 cut(s) 65, 77, 114
MspR9I CCNGG 1 cut(s) 608
MvaI CCWGG 1 cut(s) 608
MvnI CGCG 1 cut(s) 550
MwoI GCNNNNNNNGC 3 cut(s) 103, 410, 473
NdeI CATATG 1 cut(s) 232
NdeII GATC 3 cut(s) 187, 426, 447
NlaIII CATG 4 cut(s) 202, 272, 485, 523
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 3 cut(s) 220, 338, 573
PfeI GAWTC 3 cut(s) 73, 296, 384
PkrI GCNGC 1 cut(s) 391
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 606
PspGI CCWGG 1 cut(s) 606
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 402
RsaI GTAC 3 cut(s) 563, 612, 629
RsaNI GTAC 3 cut(s) 562, 611, 628
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 3 cut(s) 187, 426, 447
Sau96I GGNCC 1 cut(s) 402
ScaI AGTACT 1 cut(s) 629
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 1 cut(s) 608
SetI ASST 9 cut(s) 174, 198, 222, 264, 444, 501, 583, 612, 648
SfaNI GCATC 2 cut(s) 9, 369
Sse9I AATT 2 cut(s) 29, 275
SsiI CCGC 1 cut(s) 550
SspMI CTAG 2 cut(s) 98, 578
StyD4I CCNGG 1 cut(s) 606
TaaI ACNGT 1 cut(s) 566
TaiI ACGT 1 cut(s) 264
TaqI TCGA 3 cut(s) 429, 459, 471
TasI AATT 2 cut(s) 29, 275
TatI WGTACW 1 cut(s) 627
TfiI GAWTC 3 cut(s) 73, 296, 384
TseFI GTSAC 3 cut(s) 220, 338, 573
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 3 cut(s) 220, 338, 573
TspDTI ATGAA 3 cut(s) 17, 345, 498
TspGWI ACGGA 2 cut(s) 202, 357
XapI RAATTY 1 cut(s) 29
XspI CTAG 2 cut(s) 98, 578
ZrmI AGTACT 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.