Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008689

Physical Location & Seq

Genomic Coordinates Reverse (-)

46339233 .. 46345386

Gene Structure 6154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G568200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGACGAGTACGAGTGCGAGTGGGAGTTCGGTTGCCATCATTTTCTTGATCCTGTGCTTGGTACGGACGAGTCAAGCCATTTGGTTGACCTTACCCTCCTCCGGCACGAAGTGCGTTTCTGAGGAAATCCAGAACAACGTCGTCGTTTTGGCCGATTACGTCGTCATTCCCGACGATCACTCCCACACCCCCACCATCTCCGCCAAGGTGACATCACCATATGGGAACAATCTTCATCAAAAGGAGAATTCAACACATGGTCAGTTTGCATTCACAACTCATGAGGCTGGAAACTACCTGGCATGTTTTTGGGTTGATGGTAATAATCCTGGAGGTGGTGGAGTAAGTGTCAACATTGACTGGAAAACTGGAATTGCAGCTAAGGATTGGGAATCAGTAGCAAGAAAGGAGAAGATTGAGGGTCTTGAGCTCGAGCTGCGGAAACTTGAAGGAGCAGTGGAGGCAATCCATGAGAATCTACTCTACCTCAAGGGCAGAGAATCAGAGATGAGGGACGTGAGTGAAAGAACTAACGCGAGAGTGGCATGGTTCAGTATGATGTCCTTGGCTGTCTGCATTATAGTTTCAACTCTTCAGTTATGGCATTTGAAGAGTTTTTTCCTAAAGAAGAAGCTTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031984 GO:0033036 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098791 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

214

Amino Acids

23.52

Weight (kDa)

6.38

Isoelectric Point (pI)

28.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09580 AT1G21900 AT1G57620
fragaria_vesca	FvH4_5g29520
malus_domestica	MD08G1228900.v1.1 MD08G1229000.v1.1 MD15G1422800.v1.1
prunus_persica	Prupe.1G568100_v2.0.a1 Prupe.1G568200_v2.0.a1
pyrus_communis	pycom08g19940 pycom15g37480
rosa_chinensis	RchiOBHm_Chr7g0222471
rosa_laevigata	RLG00000002056
rosa_multiflora	Rmu_sc0002349.1_g000022 Rmu_ssc0000146.1_g000008
rosa_roxburghii	Rroxscaffold_3G00236930
rosa_rugosa	Rorug07G0208800
rosa_samantha	Rh7AG351100 Rh7BG342100 Rh7CG368400 Rh7DG347900
rosa_wichuraiana	Rw7G029650 Rw7G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	536
AciI	CCGC	2 cut(s)	201, 439
AclWI	GGATC	1 cut(s)	43
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	1 cut(s)	247
AcuI	CTGAAG	1 cut(s)	578
AdeI	CACNNNGTG	1 cut(s)	111
AfaI	GTAC	2 cut(s)	10, 63
AfiI	CCNNNNNNNGG	3 cut(s)	58, 101, 335
AgsI	TTSAA	4 cut(s)	252, 449, 588, 610
AjiI	CACGTC	1 cut(s)	517
AjnI	CCWGG	2 cut(s)	297, 328
AluBI	AGCT	4 cut(s)	380, 430, 436, 634
AluI	AGCT	4 cut(s)	380, 430, 436, 634
Alw21I	GWGCWC	1 cut(s)	432
AlwI	GGATC	1 cut(s)	43
Ama87I	CYCGRG	1 cut(s)	431
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	377, 436
ApoI	RAATTY	1 cut(s)	247
AsuHPI	GGTGA	2 cut(s)	207, 220
AvaI	CYCGRG	1 cut(s)	431
BanII	GRGCYC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	2 cut(s)	389, 423
BccI	CCATC	3 cut(s)	44, 203, 311
BciT130I	CCWGG	2 cut(s)	299, 330
BisI	GCNGC	2 cut(s)	378, 437
BlsI	GCNGC	2 cut(s)	379, 438
Bme1390I	CCNGG	2 cut(s)	299, 330
BmeT110I	CYCGRG	1 cut(s)	431
BmgBI	CACGTC	1 cut(s)	517
BmrFI	CCNGG	2 cut(s)	299, 330
BpmI	CTGGAG	1 cut(s)	351
Bpu10I	CCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	2 cut(s)	446, 473
BsaJI	CCNNGG	2 cut(s)	204, 564
BsaXI	ACNNNNNCTCC	4 cut(s)	164, 194, 333, 363
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 101, 335
Bse1I	ACTGG	2 cut(s)	365, 373
BseBI	CCWGG	2 cut(s)	299, 330
BseDI	CCNNGG	2 cut(s)	204, 564
BseLI	CCNNNNNNNGG	3 cut(s)	58, 101, 335
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	2 cut(s)	365, 373
BseRI	GAGGAG	1 cut(s)	88
BseXI	GCAGC	2 cut(s)	389, 423
Bsh1236I	CGCG	1 cut(s)	536
BshFI	GGCC	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	432
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	3 cut(s)	58, 101, 335
BsmFI	GGGAC	1 cut(s)	527
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	2 cut(s)	48, 175
BspACI	CCGC	2 cut(s)	201, 439
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	1 cut(s)	112
BspFNI	CGCG	1 cut(s)	536
BspHI	TCATGA	1 cut(s)	280
BspPI	GGATC	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	365, 373
BssECI	CCNNGG	2 cut(s)	204, 564
BssMI	GATC	2 cut(s)	48, 175
BssT1I	CCWWGG	2 cut(s)	204, 564
Bst2UI	CCWGG	2 cut(s)	299, 330
Bst6I	CTCTTC	2 cut(s)	597, 605
BstAPI	GCANNNNNTGC	1 cut(s)	111
BstDEI	CTNAG	2 cut(s)	120, 381
BstFNI	CGCG	1 cut(s)	536
BstKTI	GATC	2 cut(s)	51, 178
BstMBI	GATC	2 cut(s)	48, 175
BstMWI	GCNNNNNNNGC	4 cut(s)	111, 436, 461, 542
BstNI	CCWGG	2 cut(s)	299, 330
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	2 cut(s)	297, 328
BstUI	CGCG	1 cut(s)	536
BstV1I	GCAGC	2 cut(s)	389, 423
BsuRI	GGCC	1 cut(s)	152
BtrI	CACGTC	1 cut(s)	517
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	1 cut(s)	462
CciI	TCATGA	1 cut(s)	280
Csp6I	GTAC	2 cut(s)	9, 62
CviAII	CATG	5 cut(s)	257, 281, 303, 470, 546
CviJI	RGCY	8 cut(s)	77, 152, 287, 380, 430, 436, 569, 634
CviKI_1	RGCY	8 cut(s)	77, 152, 287, 380, 430, 436, 569, 634
CviQI	GTAC	2 cut(s)	9, 62
DdeI	CTNAG	2 cut(s)	120, 381
DpnI	GATC	2 cut(s)	50, 177
DpnII	GATC	2 cut(s)	48, 175
DraIII	CACNNNGTG	1 cut(s)	111
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	2 cut(s)	597, 605
EarI	CTCTTC	2 cut(s)	597, 605
EciI	GGCGGA	1 cut(s)	190
Ecl136II	GAGCTC	1 cut(s)	430
Eco130I	CCWWGG	2 cut(s)	204, 564
Eco24I	GRGCYC	1 cut(s)	432
Eco53kI	GAGCTC	1 cut(s)	430
Eco57I	CTGAAG	1 cut(s)	578
Eco88I	CYCGRG	1 cut(s)	431
EcoICRI	GAGCTC	1 cut(s)	430
EcoRI	GAATTC	1 cut(s)	247
EcoRII	CCWGG	2 cut(s)	297, 328
EcoT14I	CCWWGG	2 cut(s)	204, 564
EcoT38I	GRGCYC	1 cut(s)	432
ErhI	CCWWGG	2 cut(s)	204, 564
FaeI	CATG	5 cut(s)	260, 284, 306, 473, 549
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	5 cut(s)	256, 280, 302, 469, 545
FauNDI	CATATG	1 cut(s)	220
Fnu4HI	GCNGC	2 cut(s)	378, 437
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	2 cut(s)	378, 437
GluI	GCNGC	2 cut(s)	378, 437
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	1 cut(s)	102
Hin1II	CATG	5 cut(s)	260, 284, 306, 473, 549
HincII	GTYRAC	2 cut(s)	87, 352
HindII	GTYRAC	2 cut(s)	87, 352
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	4 cut(s)	70, 392, 475, 500
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	2 cut(s)	207, 220
Hpy166II	GTNNAC	2 cut(s)	87, 352
Hpy188I	TCNGA	2 cut(s)	121, 505
Hpy188III	TCNNGA	5 cut(s)	46, 130, 170, 281, 425
Hpy8I	GTNNAC	2 cut(s)	87, 352
Hpy99I	CGWCG	4 cut(s)	143, 146, 164, 176
HpyAV	CCTTC	1 cut(s)	443
HpyCH4IV	ACGT	3 cut(s)	138, 159, 516
HpyCH4V	TGCA	3 cut(s)	269, 377, 576
HpyF10VI	GCNNNNNNNGC	4 cut(s)	111, 436, 461, 542
HpyF3I	CTNAG	2 cut(s)	120, 381
HpySE526I	ACGT	3 cut(s)	138, 159, 516
Hsp92II	CATG	5 cut(s)	260, 284, 306, 473, 549
Kzo9I	GATC	2 cut(s)	48, 175
LmnI	GCTCC	1 cut(s)	452
Lsp1109I	GCAGC	2 cut(s)	389, 423
MaeII	ACGT	3 cut(s)	138, 159, 516
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	2 cut(s)	50, 177
MboI	GATC	2 cut(s)	48, 175
MboII	GAAGA	5 cut(s)	224, 424, 584, 622, 640
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	2 cut(s)	247, 372
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	9 cut(s)	106, 109, 115, 277, 326, 412, 454, 497, 504
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	2 cut(s)	299, 330
Mva1269I	GAATGC	1 cut(s)	269
MvaI	CCWGG	2 cut(s)	299, 330
MvnI	CGCG	1 cut(s)	536
MwoI	GCNNNNNNNGC	4 cut(s)	111, 436, 461, 542
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	2 cut(s)	48, 175
NlaIII	CATG	5 cut(s)	260, 284, 306, 473, 549
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	1 cut(s)	306
PaeR7I	CTCGAG	1 cut(s)	431
PagI	TCATGA	1 cut(s)	280
PcsI	WCGNNNNNNNCGW	2 cut(s)	150, 168
PctI	GAATGC	1 cut(s)	269
PfeI	GAWTC	3 cut(s)	392, 475, 500
PfoI	TCCNGGA	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	379, 438
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
Psp124BI	GAGCTC	1 cut(s)	432
Psp6I	CCWGG	2 cut(s)	297, 328
PspGI	CCWGG	2 cut(s)	297, 328
PspXI	VCTCGAGB	1 cut(s)	431
RsaI	GTAC	2 cut(s)	10, 63
RsaNI	GTAC	2 cut(s)	9, 62
SacI	GAGCTC	1 cut(s)	432
SatI	GCNGC	2 cut(s)	378, 437
Sau3AI	GATC	2 cut(s)	48, 175
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	2 cut(s)	299, 330
SduI	GDGCHC	1 cut(s)	432
Sfr274I	CTCGAG	1 cut(s)	431
SlaI	CTCGAG	1 cut(s)	431
SmlI	CTYRAG	3 cut(s)	425, 431, 488
SmoI	CTYRAG	3 cut(s)	425, 431, 488
Sse9I	AATT	2 cut(s)	247, 372
SsiI	CCGC	2 cut(s)	201, 439
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	2 cut(s)	297, 328
StyI	CCWWGG	2 cut(s)	204, 564
TaiI	ACGT	3 cut(s)	141, 162, 519
TaqI	TCGA	1 cut(s)	432
TasI	AATT	2 cut(s)	247, 372
TfiI	GAWTC	3 cut(s)	392, 475, 500
TscAI	CASTG	1 cut(s)	462
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	2 cut(s)	377, 436
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	224
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	1 cut(s)	462
XapI	RAATTY	1 cut(s)	247
XceI	RCATGY	1 cut(s)	306
XhoI	CTCGAG	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.