Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008689

Physical Location & Seq

Genomic Coordinates Reverse (-)

7690802 .. 7692459

Gene Structure 1658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G21900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCTATTAACAGAATTGCTCATGGTTCTCTGTTTCTGACGGTAGTCTTGTTCTTTCTGACGGTTAATTACGGCGAAGCTATATGGTTGACGATTCCGACGACGGGTGGAACGAAGTGTGTCTCCGAGGAGATACAGAGCAACGTCGTCGTTTTGGCTGATTACTATGTCGTCGATGAGCATAATCCTGAAAATACACCTGCTGTTTCTTCTAAGGTAACATCTCCGTATGGGAACAATCTTCATCACCAAGAAAATGTAACACATGGTCAGTTTGCATTCACAACTCAAGAAGCTGGGAACTACTTGGCTTGTTTCTGGATTGATTCCAGTCATCACTTAGCCAATCCTATAACCCTTGGGGTTGATTGGAAGATGGGTATTGCAGCTAAAGACTGGGACTCTGTTGCTAAAAAGGAAAAGATCGAGGGTGTTGAGCTTCAGTTGAGGAGACTTGAAGGGTTGGTGCTGTCGATTCGTGAGAACTTAAACTATATAAAAGACAGGGAAGCGGAGATGCGAGAAGTGAGTGAAACAACCAACTCAAGAGTGGCTTGGTTCAGTATAATGTCACTCGGGGTTTGCGTTGTGGTTGTGGGTTCACAGATACTGTATCTGAAGAGGTATTTCCACAAGAAGAAACTTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005801 GO:0012505 GO:0016020 GO:0030134 GO:0030135 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

216

Amino Acids

24.35

Weight (kDa)

6.24

Isoelectric Point (pI)

32.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	35 - 210	2.3e-48	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09580 AT1G21900 AT1G57620
fragaria_vesca	FvH4_5g29520
malus_domestica	MD08G1228900.v1.1 MD08G1229000.v1.1 MD15G1422800.v1.1
prunus_persica	Prupe.1G568100_v2.0.a1 Prupe.1G568200_v2.0.a1
pyrus_communis	pycom08g19940 pycom15g37480
rosa_chinensis	RchiOBHm_Chr7g0222471
rosa_laevigata	RLG00000002056
rosa_multiflora	Rmu_sc0002349.1_g000022 Rmu_ssc0000146.1_g000008
rosa_roxburghii	Rroxscaffold_3G00236930
rosa_rugosa	Rorug07G0208800
rosa_samantha	Rh7AG351100 Rh7BG342100 Rh7CG368400 Rh7DG347900
rosa_wichuraiana	Rw7G029650 Rw7G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	208
Acc36I	ACCTGC	1 cut(s)	208
AciI	CCGC	1 cut(s)	512
AcuI	CTGAAG	2 cut(s)	425, 638
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	458
AluBI	AGCT	4 cut(s)	80, 296, 389, 439
AluI	AGCT	4 cut(s)	80, 296, 389, 439
Alw26I	GTCTC	2 cut(s)	127, 445
AlwNI	CAGNNNCTG	1 cut(s)	610
Ama87I	CYCGRG	1 cut(s)	575
ApeKI	GCWGC	1 cut(s)	386
AsuHPI	GGTGA	1 cut(s)	239
AvaI	CYCGRG	1 cut(s)	575
BbvI	GCAGC	1 cut(s)	398
BccI	CCATC	1 cut(s)	370
BceAI	ACGGC	1 cut(s)	88
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BcoDI	GTCTC	2 cut(s)	127, 445
BfaI	CTAG	1 cut(s)	649
BfuAI	ACCTGC	1 cut(s)	208
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
BmeT110I	CYCGRG	1 cut(s)	575
BmrI	ACTGGG	1 cut(s)	406
BmsI	GCATC	1 cut(s)	507
BmuI	ACTGGG	1 cut(s)	406
BoxI	GACNNNNGTC	1 cut(s)	44
BpuEI	CTTGAG	2 cut(s)	273, 529
BsaJI	CCNNGG	2 cut(s)	126, 358
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse1I	ACTGG	2 cut(s)	330, 401
BseDI	CCNNGG	2 cut(s)	126, 358
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseNI	ACTGG	2 cut(s)	330, 401
BseRI	GAGGAG	2 cut(s)	143, 463
BseXI	GCAGC	1 cut(s)	398
BseYI	CCCAGC	1 cut(s)	296
BsiHKCI	CYCGRG	1 cut(s)	575
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	2 cut(s)	127, 445
BsmFI	GGGAC	1 cut(s)	413
BsmI	GAATGC	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	575
Bsp143I	GATC	1 cut(s)	423
BspACI	CCGC	1 cut(s)	512
BspMI	ACCTGC	1 cut(s)	208
BsrI	ACTGG	2 cut(s)	330, 401
BssECI	CCNNGG	2 cut(s)	126, 358
BssMI	GATC	1 cut(s)	423
BssT1I	CCWWGG	1 cut(s)	358
Bst4CI	ACNGT	3 cut(s)	43, 64, 612
Bst6I	CTCTTC	1 cut(s)	614
BstDEI	CTNAG	2 cut(s)	213, 340
BstKTI	GATC	1 cut(s)	426
BstMAI	GTCTC	2 cut(s)	127, 445
BstMBI	GATC	1 cut(s)	423
BstPAI	GACNNNNGTC	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	398
BveI	ACCTGC	1 cut(s)	208
CaiI	CAGNNNCTG	1 cut(s)	610
CviAII	CATG	2 cut(s)	23, 266
CviJI	RGCY	9 cut(s)	5, 80, 158, 296, 311, 344, 389, 439, 554
CviKI_1	RGCY	9 cut(s)	5, 80, 158, 296, 311, 344, 389, 439, 554
DdeI	CTNAG	2 cut(s)	213, 340
DpnI	GATC	1 cut(s)	425
DpnII	GATC	1 cut(s)	423
Eam1104I	CTCTTC	1 cut(s)	614
EarI	CTCTTC	1 cut(s)	614
Eco130I	CCWWGG	1 cut(s)	358
Eco57I	CTGAAG	2 cut(s)	425, 638
Eco88I	CYCGRG	1 cut(s)	575
EcoT14I	CCWWGG	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	358
FaeI	CATG	2 cut(s)	26, 269
FalI	AAGNNNNNCTT	2 cut(s)	538, 570
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	2 cut(s)	22, 265
Fnu4HI	GCNGC	1 cut(s)	387
Fsp4HI	GCNGC	1 cut(s)	387
FspBI	CTAG	1 cut(s)	649
GluI	GCNGC	1 cut(s)	387
GsaI	CCCAGC	1 cut(s)	300
Hin1II	CATG	2 cut(s)	26, 269
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	4 cut(s)	94, 326, 401, 475
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	90, 602
Hpy188I	TCNGA	5 cut(s)	39, 60, 99, 127, 618
Hpy188III	TCNNGA	5 cut(s)	188, 290, 319, 479, 546
Hpy8I	GTNNAC	2 cut(s)	90, 602
Hpy99I	CGWCG	5 cut(s)	103, 106, 149, 152, 176
HpyAV	CCTTC	1 cut(s)	452
HpyCH4III	ACNGT	3 cut(s)	43, 64, 612
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	2 cut(s)	278, 386
HpyF3I	CTNAG	2 cut(s)	213, 340
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	2 cut(s)	26, 269
Kzo9I	GATC	1 cut(s)	423
LpnPI	CCDG	7 cut(s)	201, 213, 282, 304, 343, 382, 490
Lsp1109I	GCAGC	1 cut(s)	398
LweI	GCATC	1 cut(s)	507
MaeI	CTAG	1 cut(s)	649
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	3 cut(s)	217, 259, 570
MalI	GATC	1 cut(s)	425
MboI	GATC	1 cut(s)	423
MboII	GAAGA	5 cut(s)	201, 233, 385, 631, 649
MluCI	AATT	2 cut(s)	15, 67
MlyI	GAGTC	1 cut(s)	395
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	4 cut(s)	121, 421, 441, 615
MseI	TTAA	3 cut(s)	9, 66, 488
Mva1269I	GAATGC	1 cut(s)	278
NdeII	GATC	1 cut(s)	423
NlaIII	CATG	2 cut(s)	26, 269
NmuCI	GTSAC	1 cut(s)	570
PaqCI	CACCTGC	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	3 cut(s)	98, 110, 582
PctI	GAATGC	1 cut(s)	278
PfeI	GAWTC	3 cut(s)	94, 326, 475
PkrI	GCNGC	1 cut(s)	388
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
PshAI	GACNNNNGTC	1 cut(s)	44
PspFI	CCCAGC	1 cut(s)	296
PstNI	CAGNNNCTG	1 cut(s)	610
SaqAI	TTAA	3 cut(s)	9, 66, 488
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	1 cut(s)	423
SchI	GAGTC	1 cut(s)	395
SetI	ASST	8 cut(s)	82, 147, 202, 219, 298, 391, 441, 626
SfaNI	GCATC	1 cut(s)	507
SmlI	CTYRAG	2 cut(s)	288, 544
SmoI	CTYRAG	2 cut(s)	288, 544
Sse9I	AATT	2 cut(s)	15, 67
SsiI	CCGC	1 cut(s)	512
SspMI	CTAG	1 cut(s)	649
StyI	CCWWGG	1 cut(s)	358
TaaI	ACNGT	3 cut(s)	43, 64, 612
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	3 cut(s)	174, 426, 473
TasI	AATT	2 cut(s)	15, 67
TfiI	GAWTC	3 cut(s)	94, 326, 475
Tru1I	TTAA	3 cut(s)	9, 66, 488
Tru9I	TTAA	3 cut(s)	9, 66, 488
TseFI	GTSAC	1 cut(s)	570
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	570
TspDTI	ATGAA	1 cut(s)	233
TspGWI	ACGGA	1 cut(s)	216
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XspI	CTAG	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.