Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008689

Physical Location & Seq

Genomic Coordinates Reverse (-)

24395630 .. 24399580

Gene Structure 3951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00236930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGATGATGAGGAGTGGTGCGAGCTTGATCCTCCTATTCCTGTTTCTGTTACGGCCGGGTCAAGCAATTTGGCTGACTCTACCTTCCAGCGGCACCAAGTGCGTCTCCGAGGAAATCCAGAACAACGTCGTCGTTTTGGCCGATTACGTCGTTATTTCCGATGACCACTCCCACTCCCCCACCATCTCCGCCAAGGTGACATCACCTTATGGCAACAATCTTCACCTCAGGGAGAATGCAACACATGGTCAGTTTGCCTTCACCACTCATGAGGCTGGTAACTACCTGGCATGTTTTTGGATTGATGGTCATAATCCAGGAGGTGGTGCAGTAAGTGTCAATCTTGACTGGGAAAACTGGGATTGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031984 GO:0033036 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098791 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

123

Amino Acids

13.56

Weight (kDa)

5.27

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	22 - 118	3.4e-16	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09580 AT1G21900 AT1G57620
fragaria_vesca	FvH4_5g29520
malus_domestica	MD08G1228900.v1.1 MD08G1229000.v1.1 MD15G1422800.v1.1
prunus_persica	Prupe.1G568100_v2.0.a1 Prupe.1G568200_v2.0.a1
pyrus_communis	pycom08g19940 pycom15g37480
rosa_chinensis	RchiOBHm_Chr7g0222471
rosa_laevigata	RLG00000002056
rosa_multiflora	Rmu_sc0002349.1_g000022 Rmu_ssc0000146.1_g000008
rosa_roxburghii	Rroxscaffold_3G00236930
rosa_rugosa	Rorug07G0208800
rosa_samantha	Rh7AG351100 Rh7BG342100 Rh7CG368400 Rh7DG347900
rosa_wichuraiana	Rw7G029650 Rw7G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	323
AciI	CCGC	2 cut(s)	90, 189
AclWI	GGATC	1 cut(s)	22
AcoI	YGGCCR	2 cut(s)	53, 138
AdeI	CACNNNGTG	1 cut(s)	99
AfiI	CCNNNNNNNGG	2 cut(s)	89, 323
AjnI	CCWGG	2 cut(s)	285, 316
AluBI	AGCT	2 cut(s)	24, 369
AluI	AGCT	2 cut(s)	24, 369
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	1 cut(s)	22
AoxI	GGCC	2 cut(s)	53, 138
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	4 cut(s)	195, 208, 215, 253
AxyI	CCTNAGG	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	92
BccI	CCATC	2 cut(s)	191, 299
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	2 cut(s)	287, 318
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	109
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
Bme1390I	CCNGG	3 cut(s)	57, 287, 318
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	3 cut(s)	57, 287, 318
BmrI	ACTGGG	2 cut(s)	358, 367
BmuI	ACTGGG	2 cut(s)	358, 367
BpuMI	CCSGG	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	108, 192
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 323
Bse1I	ACTGG	2 cut(s)	353, 362
Bse21I	CCTNAGG	1 cut(s)	227
BseBI	CCWGG	2 cut(s)	287, 318
BseDI	CCNNGG	2 cut(s)	108, 192
BseLI	CCNNNNNNNGG	2 cut(s)	89, 323
BseMII	CTCAG	1 cut(s)	241
BseNI	ACTGG	2 cut(s)	353, 362
BseRI	GAGGAG	1 cut(s)	25
BseX3I	CGGCCG	1 cut(s)	53
BsgI	GTGCAG	1 cut(s)	348
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	2 cut(s)	55, 140
BshNI	GGYRCC	1 cut(s)	92
BsiEI	CGRYCG	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	56
BslI	CCNNNNNNNGG	2 cut(s)	89, 323
BsmAI	GTCTC	1 cut(s)	109
BsmBI	CGTCTC	1 cut(s)	109
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	2 cut(s)	55, 140
Bsp143I	GATC	1 cut(s)	27
BspACI	CCGC	2 cut(s)	90, 189
BspANI	GGCC	2 cut(s)	55, 140
BspCNI	CTCAG	1 cut(s)	240
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	353, 362
BssECI	CCNNGG	2 cut(s)	108, 192
BssMI	GATC	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	287, 318
BstAPI	GCANNNNNTGC	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	227
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	27
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	2 cut(s)	287, 318
BstNSI	RCATGY	1 cut(s)	294
BstSCI	CCNGG	3 cut(s)	55, 285, 316
BstZI	CGGCCG	1 cut(s)	53
Bsu36I	CCTNAGG	1 cut(s)	227
BsuRI	GGCC	2 cut(s)	55, 140
Cac8I	GCNNGC	1 cut(s)	22
CciI	TCATGA	1 cut(s)	268
CseI	GACGC	1 cut(s)	91
CviAII	CATG	3 cut(s)	245, 269, 291
CviJI	RGCY	6 cut(s)	24, 55, 73, 140, 275, 369
CviKI_1	RGCY	6 cut(s)	24, 55, 73, 140, 275, 369
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
DraIII	CACNNNGTG	1 cut(s)	99
EaeI	YGGCCR	2 cut(s)	53, 138
EagI	CGGCCG	1 cut(s)	53
EciI	GGCGGA	1 cut(s)	178
EclXI	CGGCCG	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	192
Eco52I	CGGCCG	1 cut(s)	53
Eco81I	CCTNAGG	1 cut(s)	227
EcoRII	CCWGG	2 cut(s)	285, 316
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	3 cut(s)	248, 272, 294
FaiI	YATR	5 cut(s)	210, 246, 270, 292, 312
FatI	CATG	3 cut(s)	244, 268, 290
Fnu4HI	GCNGC	1 cut(s)	91
Fsp4HI	GCNGC	1 cut(s)	91
GluI	GCNGC	1 cut(s)	91
HaeIII	GGCC	2 cut(s)	55, 140
HapII	CCGG	1 cut(s)	56
HgaI	GACGC	1 cut(s)	91
Hin1II	CATG	3 cut(s)	248, 272, 294
HinfI	GANTC	1 cut(s)	76
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	4 cut(s)	195, 208, 215, 253
Hpy188I	TCNGA	2 cut(s)	109, 160
Hpy188III	TCNNGA	3 cut(s)	118, 269, 344
Hpy99I	CGWCG	3 cut(s)	131, 134, 152
HpyAV	CCTTC	2 cut(s)	93, 268
HpyCH4IV	ACGT	2 cut(s)	126, 147
HpyCH4V	TGCA	2 cut(s)	239, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	1 cut(s)	227
HpySE526I	ACGT	2 cut(s)	126, 147
Hsp92II	CATG	3 cut(s)	248, 272, 294
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	1 cut(s)	366
MaeII	ACGT	2 cut(s)	126, 147
MaeIII	GTNAC	3 cut(s)	48, 196, 278
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	1 cut(s)	212
MluCI	AATT	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	70
MnlI	CCTC	6 cut(s)	3, 41, 103, 236, 265, 314
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	3 cut(s)	57, 287, 318
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	2 cut(s)	287, 318
MwoI	GCNNNNNNNGC	1 cut(s)	99
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	3 cut(s)	248, 272, 294
NlaIV	GGNNCC	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	1 cut(s)	294
PagI	TCATGA	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 156
PctI	GAATGC	1 cut(s)	241
PflMI	CCANNNNNTGG	1 cut(s)	323
PfoI	TCCNGGA	1 cut(s)	316
PkrI	GCNGC	1 cut(s)	92
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Psp6I	CCWGG	2 cut(s)	285, 316
PspGI	CCWGG	2 cut(s)	285, 316
PspN4I	GGNNCC	1 cut(s)	94
SatI	GCNGC	1 cut(s)	91
Sau3AI	GATC	1 cut(s)	27
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	3 cut(s)	57, 287, 318
Sse9I	AATT	1 cut(s)	66
SsiI	CCGC	2 cut(s)	90, 189
StyD4I	CCNGG	3 cut(s)	55, 285, 316
StyI	CCWWGG	1 cut(s)	192
TaiI	ACGT	2 cut(s)	129, 150
TasI	AATT	1 cut(s)	66
TauI	GCSGC	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	196
Tsp45I	GTSAC	1 cut(s)	196
Van91I	CCANNNNNTGG	1 cut(s)	323
XceI	RCATGY	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.