Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008689

Physical Location & Seq

Genomic Coordinates Forward (+)

42135273 .. 42139326

Gene Structure 4054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G029990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGATGATGATGAGGAGTGCGAGCTTGATCCTCCTATTCCTGTTTCTGTTGTTACGGCCGGGTCAAGCAATTTGGCTGACTCTACCCTCCAGCGGCACCAAGTGCGTCTCCGAGGAAATCCAGAACAACGTCGTCGTTTTGGCCGATTACGTCGTTATTTCCGACGACCACTCCCACTCCCCCACCATCTCCGCCAAGGTGACATCACCTTATGGCAACAATCTTCACCTCAGGGAGAATGCAACACATGGTCAGTTTGCCTTCACCACTCATGAGGCTGGTAACTACCTGGCATGTTTTTGGATTGATGGTCATAATCCAGGAGGCGGTGCGGTAAGTGTCAATCTTGACTGGAAAACTGGGATTGGAGCTAAGGATTGGGAATCAGTAGCGAGAAAAGAGAAGATTGAGGGTCTTGAGCTTGAGCTGCGGAAACTTGAAGGAGCAGTGGAAGCCATCCATGAAAATCTACTCTTTCTCAAGAGCAGAGAAGCGGAGATGAGGAGTGTCAGTGAAAAGACAAACACCAGGGTGGCGTGGTTTAGCATAATGTCATTGGGCGTTTGCATTGCAGTGTCAACTCTTCAGTTATGGCACTTGAAGCAATTTTTCCAAAAGAAGAAGCTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031984 GO:0033036 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098791 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

210

Amino Acids

23.48

Weight (kDa)

7.09

Isoelectric Point (pI)

35.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	23 - 205	5.6e-50	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09580 AT1G21900 AT1G57620
fragaria_vesca	FvH4_5g29520
malus_domestica	MD08G1228900.v1.1 MD08G1229000.v1.1 MD15G1422800.v1.1
prunus_persica	Prupe.1G568100_v2.0.a1 Prupe.1G568200_v2.0.a1
pyrus_communis	pycom08g19940 pycom15g37480
rosa_chinensis	RchiOBHm_Chr7g0222471
rosa_laevigata	RLG00000002056
rosa_multiflora	Rmu_sc0002349.1_g000022 Rmu_ssc0000146.1_g000008
rosa_roxburghii	Rroxscaffold_3G00236930
rosa_rugosa	Rorug07G0208800
rosa_samantha	Rh7AG351100 Rh7BG342100 Rh7CG368400 Rh7DG347900
rosa_wichuraiana	Rw7G029650 Rw7G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	95
AciI	CCGC	6 cut(s)	93, 192, 327, 332, 430, 494
AclWI	GGATC	1 cut(s)	22
AcoI	YGGCCR	2 cut(s)	56, 141
AcuI	CTGAAG	1 cut(s)	569
AdeI	CACNNNGTG	1 cut(s)	102
AfiI	CCNNNNNNNGG	2 cut(s)	92, 326
AgsI	TTSAA	2 cut(s)	440, 601
AjnI	CCWGG	3 cut(s)	288, 319, 527
AleI	CACNNNNGTG	1 cut(s)	530
AluBI	AGCT	5 cut(s)	24, 371, 421, 427, 625
AluI	AGCT	5 cut(s)	24, 371, 421, 427, 625
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	22
AoxI	GGCC	2 cut(s)	56, 141
ApeKI	GCWGC	1 cut(s)	427
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	4 cut(s)	198, 211, 218, 256
AxyI	CCTNAGG	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	414
BccI	CCATC	3 cut(s)	194, 302, 464
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	3 cut(s)	290, 321, 529
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	112
BisI	GCNGC	2 cut(s)	94, 428
BlsI	GCNGC	2 cut(s)	95, 429
Bme1390I	CCNGG	4 cut(s)	60, 290, 321, 529
BmiI	GGNNCC	1 cut(s)	97
BmrFI	CCNGG	4 cut(s)	60, 290, 321, 529
BmrI	ACTGGG	1 cut(s)	369
BmuI	ACTGGG	1 cut(s)	369
BpmI	CTGGAG	1 cut(s)	73
Bpu10I	CCTNAGC	1 cut(s)	372
BpuEI	CTTGAG	3 cut(s)	437, 443, 464
BpuMI	CCSGG	1 cut(s)	60
BsaJI	CCNNGG	3 cut(s)	111, 195, 528
BsaXI	ACNNNNNCTCC	6 cut(s)	155, 161, 185, 191, 496, 526
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 326
Bse1I	ACTGG	2 cut(s)	356, 364
Bse21I	CCTNAGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	567
BseBI	CCWGG	3 cut(s)	290, 321, 529
BseDI	CCNNGG	3 cut(s)	111, 195, 528
BseGI	GGATG	1 cut(s)	456
BseLI	CCNNNNNNNGG	2 cut(s)	92, 326
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	1 cut(s)	244
BseNI	ACTGG	2 cut(s)	356, 364
BseRI	GAGGAG	2 cut(s)	28, 517
BseX3I	CGGCCG	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	414
Bsh1285I	CGRYCG	1 cut(s)	59
BshFI	GGCC	2 cut(s)	58, 143
BshNI	GGYRCC	1 cut(s)	95
BsiEI	CGRYCG	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	92, 326
BsmAI	GTCTC	1 cut(s)	112
BsmBI	CGTCTC	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	58, 143
Bsp143I	GATC	1 cut(s)	27
BspACI	CCGC	6 cut(s)	93, 192, 327, 332, 430, 494
BspANI	GGCC	2 cut(s)	58, 143
BspCNI	CTCAG	1 cut(s)	243
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	567
BsrI	ACTGG	2 cut(s)	356, 364
BssECI	CCNNGG	3 cut(s)	111, 195, 528
BssMI	GATC	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	3 cut(s)	290, 321, 529
Bst6I	CTCTTC	1 cut(s)	588
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	2 cut(s)	230, 372
BstF5I	GGATG	1 cut(s)	456
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	27
BstMCI	CGRYCG	1 cut(s)	59
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 427, 452, 601
BstNI	CCWGG	3 cut(s)	290, 321, 529
BstNSI	RCATGY	1 cut(s)	297
BstSCI	CCNGG	4 cut(s)	58, 288, 319, 527
BstV1I	GCAGC	1 cut(s)	414
BstZI	CGGCCG	1 cut(s)	56
Bsu36I	CCTNAGG	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	58, 143
BtsCI	GGATG	1 cut(s)	456
BtsI	GCAGTG	2 cut(s)	453, 579
BtsIMutI	CAGTG	3 cut(s)	453, 517, 579
Cac8I	GCNNGC	1 cut(s)	22
CciI	TCATGA	1 cut(s)	271
CseI	GACGC	1 cut(s)	94
CviAII	CATG	4 cut(s)	248, 272, 294, 461
DdeI	CTNAG	2 cut(s)	230, 372
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
DraIII	CACNNNGTG	1 cut(s)	102
EaeI	YGGCCR	2 cut(s)	56, 141
EagI	CGGCCG	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
EciI	GGCGGA	1 cut(s)	181
EclXI	CGGCCG	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	195
Eco52I	CGGCCG	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	569
Eco81I	CCTNAGG	1 cut(s)	230
EcoRII	CCWGG	3 cut(s)	288, 319, 527
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	4 cut(s)	251, 275, 297, 464
FaiI	YATR	8 cut(s)	213, 249, 273, 295, 315, 462, 548, 592
FatI	CATG	4 cut(s)	247, 271, 293, 460
Fnu4HI	GCNGC	2 cut(s)	94, 428
FokI	GGATG	1 cut(s)	443
Fsp4HI	GCNGC	2 cut(s)	94, 428
GluI	GCNGC	2 cut(s)	94, 428
GsuI	CTGGAG	1 cut(s)	73
HaeIII	GGCC	2 cut(s)	58, 143
HapII	CCGG	1 cut(s)	59
HgaI	GACGC	1 cut(s)	94
Hin1II	CATG	4 cut(s)	251, 275, 297, 464
HincII	GTYRAC	1 cut(s)	579
HindII	GTYRAC	1 cut(s)	579
HinfI	GANTC	2 cut(s)	79, 383
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	4 cut(s)	198, 211, 218, 256
Hpy166II	GTNNAC	1 cut(s)	579
Hpy188I	TCNGA	2 cut(s)	112, 163
Hpy188III	TCNNGA	5 cut(s)	121, 272, 347, 416, 481
Hpy8I	GTNNAC	1 cut(s)	579
Hpy99I	CGWCG	4 cut(s)	134, 137, 155, 167
HpyAV	CCTTC	2 cut(s)	271, 434
HpyCH4IV	ACGT	2 cut(s)	129, 150
HpyCH4V	TGCA	3 cut(s)	242, 567, 572
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 427, 452, 601
HpyF3I	CTNAG	2 cut(s)	230, 372
HpySE526I	ACGT	2 cut(s)	129, 150
Hsp92II	CATG	4 cut(s)	251, 275, 297, 464
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	2 cut(s)	368, 443
Lsp1109I	GCAGC	1 cut(s)	414
MaeII	ACGT	2 cut(s)	129, 150
MaeIII	GTNAC	3 cut(s)	51, 199, 281
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	4 cut(s)	215, 415, 575, 631
MluCI	AATT	2 cut(s)	69, 605
MlyI	GAGTC	1 cut(s)	73
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	9 cut(s)	6, 41, 97, 106, 239, 268, 317, 403, 495
MslI	CAYNNNNRTG	2 cut(s)	530, 572
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	4 cut(s)	60, 290, 321, 529
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	3 cut(s)	290, 321, 529
MwoI	GCNNNNNNNGC	4 cut(s)	102, 427, 452, 601
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	4 cut(s)	251, 275, 297, 464
NlaIV	GGNNCC	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	297
OliI	CACNNNNGTG	1 cut(s)	530
PagI	TCATGA	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 159
PctI	GAATGC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	383
PfoI	TCCNGGA	1 cut(s)	319
PkrI	GCNGC	2 cut(s)	95, 429
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Psp6I	CCWGG	3 cut(s)	288, 319, 527
PspGI	CCWGG	3 cut(s)	288, 319, 527
PspN4I	GGNNCC	1 cut(s)	97
RseI	CAYNNNNRTG	2 cut(s)	530, 572
SatI	GCNGC	2 cut(s)	94, 428
Sau3AI	GATC	1 cut(s)	27
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	4 cut(s)	60, 290, 321, 529
SmiMI	CAYNNNNRTG	2 cut(s)	530, 572
SmlI	CTYRAG	3 cut(s)	416, 422, 479
SmoI	CTYRAG	3 cut(s)	416, 422, 479
Sse9I	AATT	2 cut(s)	69, 605
SsiI	CCGC	6 cut(s)	93, 192, 327, 332, 430, 494
StyD4I	CCNGG	4 cut(s)	58, 288, 319, 527
StyI	CCWWGG	1 cut(s)	195
TaiI	ACGT	2 cut(s)	132, 153
TasI	AATT	2 cut(s)	69, 605
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	383
TscAI	CASTG	3 cut(s)	453, 517, 579
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	477
TspRI	CASTG	3 cut(s)	453, 517, 579
XceI	RCATGY	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.