Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008689

Physical Location & Seq

Genomic Coordinates Forward (+)

44784028 .. 44788125

Gene Structure 4098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG351100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGATGATGATGAGGAGTGCGAGCTTGATCCTCCTATTCCTGTTTCTGTTGTTACGGCCGGGTCAAGCAATTTGGCTGACTCTACCCTCCAGCGGCACCAAGTGCGTCTCCGAGGAAATCCAGAACAACGTCGTCGTTTTGGCCGATTACGTCGTTATTTCCGACGACCACTCCCACTCCCCCACCATCTCCGCCAAGGTGACATCACCTTATGGCAACAATCTTCACCTCAGGGAGAATGCAACACATGGTCAGTTTGCCTTCACCACTCATGAGGCTGGTAACTACCTGGCATGTTTTTGGATTGATGGTCATAATCCAGGAGGTGGTGCAGTAAGTGTCAATCTTGACTGGAAAACTGGGATTGGAGCTAAGGATTGGGAATCAGTAGCGAGAAAAGAGAAGATTGAGGTGAGCTATTTGAAAAATATTATACACACACGCTCACACATTATTTATCTGTTAACTTTTATTCATTTTAAGTGCTATTATTTATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031984 GO:0033036 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098791 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

166

Amino Acids

18.64

Weight (kDa)

7.11

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	23 - 137	2.6e-21	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09580 AT1G21900 AT1G57620
fragaria_vesca	FvH4_5g29520
malus_domestica	MD08G1228900.v1.1 MD08G1229000.v1.1 MD15G1422800.v1.1
prunus_persica	Prupe.1G568100_v2.0.a1 Prupe.1G568200_v2.0.a1
pyrus_communis	pycom08g19940 pycom15g37480
rosa_chinensis	RchiOBHm_Chr7g0222471
rosa_laevigata	RLG00000002056
rosa_multiflora	Rmu_sc0002349.1_g000022 Rmu_ssc0000146.1_g000008
rosa_roxburghii	Rroxscaffold_3G00236930
rosa_rugosa	Rorug07G0208800
rosa_samantha	Rh7AG351100 Rh7BG342100 Rh7CG368400 Rh7DG347900
rosa_wichuraiana	Rw7G029650 Rw7G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	95
AccB7I	CCANNNNNTGG	1 cut(s)	326
AciI	CCGC	2 cut(s)	93, 192
AclWI	GGATC	1 cut(s)	22
AcoI	YGGCCR	2 cut(s)	56, 141
AdeI	CACNNNGTG	1 cut(s)	102
AfiI	CCNNNNNNNGG	2 cut(s)	92, 326
AgsI	TTSAA	1 cut(s)	424
AjnI	CCWGG	2 cut(s)	288, 319
AluBI	AGCT	3 cut(s)	24, 371, 417
AluI	AGCT	3 cut(s)	24, 371, 417
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	22
AoxI	GGCC	2 cut(s)	56, 141
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	5 cut(s)	198, 211, 218, 256, 424
AxyI	CCTNAGG	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	95
BccI	CCATC	2 cut(s)	194, 302
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	2 cut(s)	290, 321
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	112
BisI	GCNGC	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	95
Bme1390I	CCNGG	3 cut(s)	60, 290, 321
BmiI	GGNNCC	1 cut(s)	97
BmrFI	CCNGG	3 cut(s)	60, 290, 321
BmrI	ACTGGG	1 cut(s)	369
BmuI	ACTGGG	1 cut(s)	369
BpmI	CTGGAG	1 cut(s)	73
Bpu10I	CCTNAGC	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	111, 195
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 161, 185, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 326
Bse1I	ACTGG	2 cut(s)	356, 364
Bse21I	CCTNAGG	1 cut(s)	230
BseBI	CCWGG	2 cut(s)	290, 321
BseDI	CCNNGG	2 cut(s)	111, 195
BseLI	CCNNNNNNNGG	2 cut(s)	92, 326
BseMII	CTCAG	1 cut(s)	244
BseNI	ACTGG	2 cut(s)	356, 364
BseRI	GAGGAG	1 cut(s)	28
BseX3I	CGGCCG	1 cut(s)	56
BsgI	GTGCAG	1 cut(s)	351
Bsh1285I	CGRYCG	1 cut(s)	59
BshFI	GGCC	2 cut(s)	58, 143
BshNI	GGYRCC	1 cut(s)	95
BsiEI	CGRYCG	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	92, 326
BsmAI	GTCTC	1 cut(s)	112
BsmBI	CGTCTC	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	58, 143
Bsp143I	GATC	1 cut(s)	27
BspACI	CCGC	2 cut(s)	93, 192
BspANI	GGCC	2 cut(s)	58, 143
BspCNI	CTCAG	1 cut(s)	243
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	95
BsrI	ACTGG	2 cut(s)	356, 364
BssECI	CCNNGG	2 cut(s)	111, 195
BssMI	GATC	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	2 cut(s)	290, 321
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	2 cut(s)	230, 372
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	27
BstMCI	CGRYCG	1 cut(s)	59
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstNI	CCWGG	2 cut(s)	290, 321
BstNSI	RCATGY	1 cut(s)	297
BstSCI	CCNGG	3 cut(s)	58, 288, 319
BstZI	CGGCCG	1 cut(s)	56
Bsu36I	CCTNAGG	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	58, 143
Cac8I	GCNNGC	1 cut(s)	22
CciI	TCATGA	1 cut(s)	271
CseI	GACGC	1 cut(s)	94
CviAII	CATG	3 cut(s)	248, 272, 294
CviJI	RGCY	7 cut(s)	24, 58, 76, 143, 278, 371, 417
CviKI_1	RGCY	7 cut(s)	24, 58, 76, 143, 278, 371, 417
DdeI	CTNAG	2 cut(s)	230, 372
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
DraIII	CACNNNGTG	1 cut(s)	102
EaeI	YGGCCR	2 cut(s)	56, 141
EagI	CGGCCG	1 cut(s)	56
EciI	GGCGGA	1 cut(s)	181
EclXI	CGGCCG	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	195
Eco52I	CGGCCG	1 cut(s)	56
Eco81I	CCTNAGG	1 cut(s)	230
EcoRII	CCWGG	2 cut(s)	288, 319
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	3 cut(s)	251, 275, 297
FaiI	YATR	7 cut(s)	213, 249, 273, 295, 315, 434, 496
FatI	CATG	3 cut(s)	247, 271, 293
Fnu4HI	GCNGC	1 cut(s)	94
Fsp4HI	GCNGC	1 cut(s)	94
GluI	GCNGC	1 cut(s)	94
GsuI	CTGGAG	1 cut(s)	73
HaeIII	GGCC	2 cut(s)	58, 143
HapII	CCGG	1 cut(s)	59
HgaI	GACGC	1 cut(s)	94
Hin1II	CATG	3 cut(s)	251, 275, 297
HincII	GTYRAC	1 cut(s)	465
HindII	GTYRAC	1 cut(s)	465
HinfI	GANTC	2 cut(s)	79, 383
HpaI	GTTAAC	1 cut(s)	465
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	5 cut(s)	198, 211, 218, 256, 424
Hpy166II	GTNNAC	1 cut(s)	465
Hpy188I	TCNGA	2 cut(s)	112, 163
Hpy188III	TCNNGA	3 cut(s)	121, 272, 347
Hpy8I	GTNNAC	1 cut(s)	465
Hpy99I	CGWCG	4 cut(s)	134, 137, 155, 167
HpyAV	CCTTC	1 cut(s)	271
HpyCH4IV	ACGT	2 cut(s)	129, 150
HpyCH4V	TGCA	2 cut(s)	242, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpyF3I	CTNAG	2 cut(s)	230, 372
HpySE526I	ACGT	2 cut(s)	129, 150
Hsp92II	CATG	3 cut(s)	251, 275, 297
KspAI	GTTAAC	1 cut(s)	465
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	1 cut(s)	368
MaeII	ACGT	2 cut(s)	129, 150
MaeIII	GTNAC	3 cut(s)	51, 199, 281
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	2 cut(s)	215, 415
MluCI	AATT	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	73
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	8 cut(s)	6, 41, 97, 106, 239, 268, 317, 403
MseI	TTAA	3 cut(s)	464, 480, 499
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	3 cut(s)	60, 290, 321
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	2 cut(s)	290, 321
MwoI	GCNNNNNNNGC	1 cut(s)	102
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	3 cut(s)	251, 275, 297
NlaIV	GGNNCC	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	297
PagI	TCATGA	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 159
PctI	GAATGC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	326
PfoI	TCCNGGA	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	95
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Psp6I	CCWGG	2 cut(s)	288, 319
PspGI	CCWGG	2 cut(s)	288, 319
PspN4I	GGNNCC	1 cut(s)	97
SaqAI	TTAA	3 cut(s)	464, 480, 499
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	1 cut(s)	27
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	3 cut(s)	60, 290, 321
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	2 cut(s)	93, 192
SspI	AATATT	1 cut(s)	430
StyD4I	CCNGG	3 cut(s)	58, 288, 319
StyI	CCWWGG	1 cut(s)	195
TaiI	ACGT	2 cut(s)	132, 153
TasI	AATT	1 cut(s)	69
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	3 cut(s)	464, 480, 499
Tru9I	TTAA	3 cut(s)	464, 480, 499
TseFI	GTSAC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	464
Van91I	CCANNNNNTGG	1 cut(s)	326
XceI	RCATGY	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.