Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008689

Physical Location & Seq

Genomic Coordinates Reverse (-)

52444805 .. 52447138

Gene Structure 2334 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1422800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCCGACGAGAACAAGTGCGACAGTGTTGGCCGCGGCCCTCTTGTTGATCGCGTGCTCGGTGGTGCCGACTGGTGAAGCCATTTGGATGAAATTACCCTCCTCCGACACCAAGTGCGTCTCTGAAGAAATCCAGAACAACGTCGTCGTTTTGGGCGATTACGGCGTTATCTCCCATGATCACAACCACTCCTCCACCATCTCCGTCAATGTGACATCGCCATATGGGAACAATCTTCATCACAGGGAGAATGCAACAGATGGTCAGTTTGCCTTCACAACTCAAGAGTCTGGCACCTACCTGGCTTGTTTTTCGGTTGATGGTAACAAACATGAAGGTAGTTCAGTAAGTCTCAACCTTGACTGGAAAATTGGAATTGCGGCTCAGGATTGGGATTCAGTAGCAAGAAAAGAGAAGATTGAGGGTGTTGAGCTTGAACTACGGAAACTTGAACAACTAGTGATTGCTGTCATCCTGTATCAACGCTTTCTCAAGGCCAGAGAAGTGGAAAGGAGGAATTTGAGCGAACAAACTAACTCGAGGGTGGCACGGTATAGCATGATGTCGTTGAGCCTCTGCATTGGAGTTTCATGTCTGCAGCTATGGCACTTGAAGAGATTTTTCCGAAAGAAGAAGATTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031984 GO:0033036 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098791 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

215

Amino Acids

23.94

Weight (kDa)

8.27

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	27 - 209	2.4e-49	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09580 AT1G21900 AT1G57620
fragaria_vesca	FvH4_5g29520
malus_domestica	MD08G1228900.v1.1 MD08G1229000.v1.1 MD15G1422800.v1.1
prunus_persica	Prupe.1G568100_v2.0.a1 Prupe.1G568200_v2.0.a1
pyrus_communis	pycom08g19940 pycom15g37480
rosa_chinensis	RchiOBHm_Chr7g0222471
rosa_laevigata	RLG00000002056
rosa_multiflora	Rmu_sc0002349.1_g000022 Rmu_ssc0000146.1_g000008
rosa_roxburghii	Rroxscaffold_3G00236930
rosa_rugosa	Rorug07G0208800
rosa_samantha	Rh7AG351100 Rh7BG342100 Rh7CG368400 Rh7DG347900
rosa_wichuraiana	Rw7G029650 Rw7G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	64, 293
AccII	CGCG	2 cut(s)	35, 53
AciI	CCGC	3 cut(s)	33, 35, 380
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	517
AcuI	CTGAAG	1 cut(s)	144
AdeI	CACNNNGTG	1 cut(s)	114
AgsI	TTSAA	3 cut(s)	437, 452, 613
AhlI	ACTAGT	1 cut(s)	457
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	2 cut(s)	433, 601
AluI	AGCT	2 cut(s)	433, 601
Alw21I	GWGCWC	1 cut(s)	59
Alw26I	GTCTC	2 cut(s)	124, 356
Ama87I	CYCGRG	1 cut(s)	538
AoxI	GGCC	3 cut(s)	30, 36, 495
ApeKI	GCWGC	1 cut(s)	598
ApoI	RAATTY	1 cut(s)	517
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	86
AvaI	CYCGRG	1 cut(s)	538
BanI	GGYRCC	2 cut(s)	64, 293
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	610
BccI	CCATC	3 cut(s)	206, 254, 314
BceAI	ACGGC	1 cut(s)	178
BciT130I	CCWGG	1 cut(s)	302
BclI	TGATCA	1 cut(s)	178
BcoDI	GTCTC	2 cut(s)	124, 356
BcuI	ACTAGT	1 cut(s)	457
BfaI	CTAG	1 cut(s)	458
BfmI	CTRYAG	1 cut(s)	596
BisI	GCNGC	4 cut(s)	33, 36, 381, 599
BlsI	GCNGC	4 cut(s)	34, 37, 382, 600
Bme1390I	CCNGG	1 cut(s)	302
BmeT110I	CYCGRG	1 cut(s)	538
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	66, 295
BmrFI	CCNGG	1 cut(s)	302
Bpu10I	CCTNAGC	1 cut(s)	384
BpuEI	CTTGAG	2 cut(s)	267, 476
BsaJI	CCNNGG	1 cut(s)	33
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 176, 203, 206
Bse1I	ACTGG	2 cut(s)	76, 368
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	2 cut(s)	93, 471
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	2 cut(s)	76, 368
BseRI	GAGGAG	2 cut(s)	91, 181
BseXI	GCAGC	1 cut(s)	610
Bsh1236I	CGCG	2 cut(s)	35, 53
BshFI	GGCC	3 cut(s)	32, 38, 497
BshNI	GGYRCC	2 cut(s)	64, 293
BsiHKAI	GWGCWC	1 cut(s)	59
BsiHKCI	CYCGRG	1 cut(s)	538
BsmAI	GTCTC	2 cut(s)	124, 356
BsmBI	CGTCTC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	3 cut(s)	32, 38, 497
BsoBI	CYCGRG	1 cut(s)	538
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	2 cut(s)	48, 178
BspACI	CCGC	3 cut(s)	33, 35, 380
BspANI	GGCC	3 cut(s)	32, 38, 497
BspCNI	CTCAG	1 cut(s)	397
BspFNI	CGCG	2 cut(s)	35, 53
BspLI	GGNNCC	2 cut(s)	66, 295
BspMAI	CTGCAG	1 cut(s)	600
BspT107I	GGYRCC	2 cut(s)	64, 293
BsrI	ACTGG	2 cut(s)	76, 368
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	2 cut(s)	48, 178
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	2 cut(s)	25, 552
Bst6I	CTCTTC	1 cut(s)	608
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	1 cut(s)	384
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	2 cut(s)	93, 471
BstFNI	CGCG	2 cut(s)	35, 53
BstKTI	GATC	2 cut(s)	51, 181
BstMAI	GTCTC	2 cut(s)	124, 356
BstMBI	GATC	2 cut(s)	48, 178
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 604
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	300
BstSFI	CTRYAG	1 cut(s)	596
BstUI	CGCG	2 cut(s)	35, 53
BstV1I	GCAGC	1 cut(s)	610
BstXI	CCANNNNNNTGG	1 cut(s)	505
BsuRI	GGCC	3 cut(s)	32, 38, 497
BtgI	CCRYGG	1 cut(s)	33
BtgZI	GCGATG	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	93, 471
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	37
Cfr42I	CCGCGG	1 cut(s)	36
CseI	GACGC	1 cut(s)	106
CviAII	CATG	4 cut(s)	176, 332, 559, 591
CviJI	RGCY	9 cut(s)	32, 38, 80, 305, 383, 433, 497, 573, 601
CviKI_1	RGCY	9 cut(s)	32, 38, 80, 305, 383, 433, 497, 573, 601
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	2 cut(s)	50, 180
DpnII	GATC	2 cut(s)	48, 178
DraIII	CACNNNGTG	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	608
EarI	CTCTTC	1 cut(s)	608
Eco57I	CTGAAG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	538
EcoRII	CCWGG	1 cut(s)	300
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	4 cut(s)	179, 335, 562, 594
FaiI	YATR	8 cut(s)	177, 223, 225, 333, 555, 560, 592, 604
FatI	CATG	4 cut(s)	175, 331, 558, 590
FauNDI	CATATG	1 cut(s)	223
FbaI	TGATCA	1 cut(s)	178
Fnu4HI	GCNGC	4 cut(s)	33, 36, 381, 599
FokI	GGATG	2 cut(s)	100, 458
Fsp4HI	GCNGC	4 cut(s)	33, 36, 381, 599
FspBI	CTAG	1 cut(s)	458
GluI	GCNGC	4 cut(s)	33, 36, 381, 599
HaeIII	GGCC	3 cut(s)	32, 38, 497
HgaI	GACGC	1 cut(s)	106
Hin1II	CATG	4 cut(s)	179, 335, 562, 594
HinfI	GANTC	2 cut(s)	287, 395
HphI	GGTGA	1 cut(s)	86
Hpy188I	TCNGA	3 cut(s)	106, 124, 626
Hpy188III	TCNNGA	3 cut(s)	133, 284, 386
Hpy99I	CGWCG	3 cut(s)	10, 146, 149
HpyAV	CCTTC	2 cut(s)	283, 329
HpyCH4III	ACNGT	2 cut(s)	25, 552
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	3 cut(s)	254, 579, 598
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 604
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	4 cut(s)	179, 335, 562, 594
Ksp22I	TGATCA	1 cut(s)	178
KspI	CCGCGG	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	48, 178
Lsp1109I	GCAGC	1 cut(s)	610
MaeI	CTAG	1 cut(s)	458
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	2 cut(s)	211, 323
MalI	GATC	2 cut(s)	50, 180
MboI	GATC	2 cut(s)	48, 178
MboII	GAAGA	5 cut(s)	137, 227, 427, 625, 643
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	4 cut(s)	92, 369, 375, 517
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	8 cut(s)	50, 109, 112, 202, 415, 507, 534, 584
MslI	CAYNNNNRTG	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	302
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	302
MvnI	CGCG	2 cut(s)	35, 53
MwoI	GCNNNNNNNGC	2 cut(s)	162, 604
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	2 cut(s)	48, 178
NlaIII	CATG	4 cut(s)	179, 335, 562, 594
NlaIV	GGNNCC	2 cut(s)	66, 295
NmuCI	GTSAC	1 cut(s)	211
PaeR7I	CTCGAG	1 cut(s)	538
PcsI	WCGNNNNNNNCGW	2 cut(s)	65, 153
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	395
PkrI	GCNGC	4 cut(s)	34, 37, 382, 600
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	2 cut(s)	66, 295
PspPI	GGNCC	1 cut(s)	37
PspXI	VCTCGAGB	1 cut(s)	538
PstI	CTGCAG	1 cut(s)	600
RseI	CAYNNNNRTG	1 cut(s)	86
SacII	CCGCGG	1 cut(s)	36
SatI	GCNGC	4 cut(s)	33, 36, 381, 599
Sau3AI	GATC	2 cut(s)	48, 178
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	7 cut(s)	144, 299, 303, 340, 360, 435, 603
SfcI	CTRYAG	1 cut(s)	596
Sfr274I	CTCGAG	1 cut(s)	538
Sfr303I	CCGCGG	1 cut(s)	36
SgrBI	CCGCGG	1 cut(s)	36
SlaI	CTCGAG	1 cut(s)	538
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	3 cut(s)	282, 491, 538
SmoI	CTYRAG	3 cut(s)	282, 491, 538
SpeI	ACTAGT	1 cut(s)	457
Sse9I	AATT	4 cut(s)	92, 369, 375, 517
SsiI	CCGC	3 cut(s)	33, 35, 380
SspMI	CTAG	1 cut(s)	458
StyD4I	CCNGG	1 cut(s)	300
TaaI	ACNGT	2 cut(s)	25, 552
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	539
TasI	AATT	4 cut(s)	92, 369, 375, 517
TauI	GCSGC	3 cut(s)	35, 38, 383
TfiI	GAWTC	1 cut(s)	395
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	598
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	4 cut(s)	104, 227, 348, 579
TspGWI	ACGGA	2 cut(s)	193, 457
TspRI	CASTG	1 cut(s)	30
XapI	RAATTY	1 cut(s)	517
XhoI	CTCGAG	1 cut(s)	538
XspI	CTAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.