Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008689

Physical Location & Seq

Genomic Coordinates Forward (+)

21342627 .. 21344804

Gene Structure 2178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G57620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAAGAAGAAGATGATTCCGACGACGATCTTACTCTCAGCTCTCATTTTCTCTCTATCACCGATCTGTGAAGCTGTGTGGCTTACTGTACCTCACACCGGATCAAAGTGCGTCTCCGAAGAAATCCAAAGCAACGTCATCGTTTTAGCTGATTACCTTGTTATCTCCGAGGAACATTCTATCTTCCCTACTGTCTCCGTTAAGGTTACAGCACCTTATGGCACCGTGTTACACCACAGGGAAAATACAACAAACGGTCAGTTTGCATTCACAACCCAAGAATCAGGAACTTACTTGGCGTGTTTTGAGGCCGATGCTAAAAGTCATGGTAACAAAGATTTTAGCATCAACATCGACTGGAAAACTGGAATCGCAGCTAAAGATTGGGACTCCATTGCTAGAAAAGAAAAGATCGAGGGTGTAGAGCTGGAGTTTAAGAAACTTGAAGGTGCAGTTGAAGCAATCCATGAAAATCTGATTTACCTCAGAAACAGAGAAGCAGAGATGAGGATTGTGAGTGAAAAAACAAACTCGAGAGTCGCATGGTACAGTATAATGTCGCTGGGGATTTGCATTGTGGTCTCTGGTTTACAGATTTTGTACTTGAAGCAATACTTTGAAAAGAAGAAGCTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031984 GO:0033036 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098791 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

212

Amino Acids

23.89

Weight (kDa)

6.6

Isoelectric Point (pI)

30.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	26 - 207	2.7e-48	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09580 AT1G21900 AT1G57620
fragaria_vesca	FvH4_5g29520
malus_domestica	MD08G1228900.v1.1 MD08G1229000.v1.1 MD15G1422800.v1.1
prunus_persica	Prupe.1G568100_v2.0.a1 Prupe.1G568200_v2.0.a1
pyrus_communis	pycom08g19940 pycom15g37480
rosa_chinensis	RchiOBHm_Chr7g0222471
rosa_laevigata	RLG00000002056
rosa_multiflora	Rmu_sc0002349.1_g000022 Rmu_ssc0000146.1_g000008
rosa_roxburghii	Rroxscaffold_3G00236930
rosa_rugosa	Rorug07G0208800
rosa_samantha	Rh7AG351100 Rh7BG342100 Rh7CG368400 Rh7DG347900
rosa_wichuraiana	Rw7G029650 Rw7G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AclWI	GGATC	1 cut(s)	109
AfaI	GTAC	3 cut(s)	90, 548, 602
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	4 cut(s)	446, 458, 607, 620
AluBI	AGCT	6 cut(s)	41, 74, 149, 377, 427, 631
AluI	AGCT	6 cut(s)	41, 74, 149, 377, 427, 631
Alw26I	GTCTC	3 cut(s)	118, 199, 586
AlwI	GGATC	1 cut(s)	109
Ama87I	CYCGRG	1 cut(s)	532
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	51
AvaI	CYCGRG	1 cut(s)	532
BanI	GGYRCC	1 cut(s)	221
BbvI	GCAGC	1 cut(s)	386
BcgI	CGANNNNNNTGC	4 cut(s)	121, 155, 334, 368
BcoDI	GTCTC	3 cut(s)	118, 199, 586
BfaI	CTAG	1 cut(s)	399
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
BmeT110I	CYCGRG	1 cut(s)	532
BmiI	GGNNCC	1 cut(s)	223
BmsI	GCATC	2 cut(s)	304, 354
BpmI	CTGGAG	1 cut(s)	449
BsaI	GGTCTC	1 cut(s)	586
BsaJI	CCNNGG	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	362, 370
Bse3DI	GCAATG	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	2 cut(s)	51, 499
BseNI	ACTGG	2 cut(s)	362, 370
BseXI	GCAGC	1 cut(s)	386
BseYI	CCCAGC	1 cut(s)	562
BsgI	GTGCAG	1 cut(s)	471
BshFI	GGCC	1 cut(s)	311
BshNI	GGYRCC	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	532
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	3 cut(s)	118, 199, 586
BsmBI	CGTCTC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	311
Bso31I	GGTCTC	1 cut(s)	586
BsoBI	CYCGRG	1 cut(s)	532
Bsp143I	GATC	4 cut(s)	27, 63, 101, 411
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	2 cut(s)	50, 498
BspLI	GGNNCC	1 cut(s)	223
BspPI	GGATC	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	586
BsrDI	GCAATG	1 cut(s)	393
BsrI	ACTGG	2 cut(s)	362, 370
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	4 cut(s)	27, 63, 101, 411
Bst4CI	ACNGT	5 cut(s)	88, 193, 226, 257, 551
BstDEI	CTNAG	2 cut(s)	37, 485
BstKTI	GATC	4 cut(s)	30, 66, 104, 414
BstMAI	GTCTC	3 cut(s)	118, 199, 586
BstMBI	GATC	4 cut(s)	27, 63, 101, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstV1I	GCAGC	1 cut(s)	386
BsuRI	GGCC	1 cut(s)	311
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	89, 547, 601
CviAII	CATG	3 cut(s)	326, 467, 543
CviJI	RGCY	8 cut(s)	41, 74, 82, 149, 311, 377, 427, 631
CviKI_1	RGCY	8 cut(s)	41, 74, 82, 149, 311, 377, 427, 631
CviQI	GTAC	3 cut(s)	89, 547, 601
DdeI	CTNAG	2 cut(s)	37, 485
DpnI	GATC	4 cut(s)	29, 65, 103, 413
DpnII	GATC	4 cut(s)	27, 63, 101, 411
Eco31I	GGTCTC	1 cut(s)	586
Eco88I	CYCGRG	1 cut(s)	532
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	3 cut(s)	329, 470, 546
FaiI	YATR	5 cut(s)	219, 327, 468, 544, 554
FalI	AAGNNNNNCTT	2 cut(s)	599, 631
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	3 cut(s)	325, 466, 542
Fnu4HI	GCNGC	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	375
FspBI	CTAG	1 cut(s)	399
GluI	GCNGC	1 cut(s)	375
GsaI	CCCAGC	1 cut(s)	566
GsuI	CTGGAG	1 cut(s)	449
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	1 cut(s)	99
HgaI	GACGC	1 cut(s)	100
Hin1II	CATG	3 cut(s)	329, 470, 546
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	5 cut(s)	16, 281, 369, 389, 537
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	1 cut(s)	590
Hpy188I	TCNGA	5 cut(s)	21, 118, 169, 477, 488
Hpy188III	TCNNGA	2 cut(s)	285, 534
Hpy8I	GTNNAC	1 cut(s)	590
Hpy99I	CGWCG	2 cut(s)	25, 28
HpyAV	CCTTC	1 cut(s)	440
HpyCH4III	ACNGT	5 cut(s)	88, 193, 226, 257, 551
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	3 cut(s)	266, 452, 573
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	2 cut(s)	37, 485
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	3 cut(s)	329, 470, 546
Kzo9I	GATC	4 cut(s)	27, 63, 101, 411
LpnPI	CCDG	8 cut(s)	112, 223, 270, 343, 351, 413, 548, 570
Lsp1109I	GCAGC	1 cut(s)	386
LweI	GCATC	2 cut(s)	304, 354
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	3 cut(s)	205, 228, 329
MalI	GATC	4 cut(s)	29, 65, 103, 413
MboI	GATC	4 cut(s)	27, 63, 101, 411
MboII	GAAGA	6 cut(s)	16, 19, 22, 131, 175, 637
MlyI	GAGTC	2 cut(s)	383, 546
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	6 cut(s)	102, 163, 301, 409, 494, 501
MseI	TTAA	2 cut(s)	201, 435
MspI	CCGG	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	458
NdeII	GATC	4 cut(s)	27, 63, 101, 411
NlaIII	CATG	3 cut(s)	329, 470, 546
NlaIV	GGNNCC	1 cut(s)	223
PaeR7I	CTCGAG	1 cut(s)	532
PctI	GAATGC	1 cut(s)	266
PfeI	GAWTC	3 cut(s)	16, 281, 369
PkrI	GCNGC	1 cut(s)	376
PleI	GAGTC	2 cut(s)	383, 545
PpsI	GAGTC	2 cut(s)	383, 545
PspFI	CCCAGC	1 cut(s)	562
PspN4I	GGNNCC	1 cut(s)	223
RsaI	GTAC	3 cut(s)	90, 548, 602
RsaNI	GTAC	3 cut(s)	89, 547, 601
SaqAI	TTAA	2 cut(s)	201, 435
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	4 cut(s)	27, 63, 101, 411
SchI	GAGTC	2 cut(s)	383, 546
SfaNI	GCATC	2 cut(s)	304, 354
Sfr274I	CTCGAG	1 cut(s)	532
SlaI	CTCGAG	1 cut(s)	532
SmlI	CTYRAG	1 cut(s)	532
SmoI	CTYRAG	1 cut(s)	532
SspMI	CTAG	1 cut(s)	399
TaaI	ACNGT	5 cut(s)	88, 193, 226, 257, 551
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	3 cut(s)	354, 414, 533
TatI	WGTACW	1 cut(s)	600
TfiI	GAWTC	3 cut(s)	16, 281, 369
Tru1I	TTAA	2 cut(s)	201, 435
Tru9I	TTAA	2 cut(s)	201, 435
TseI	GCWGC	1 cut(s)	374
TspDTI	ATGAA	2 cut(s)	17, 483
TspGWI	ACGGA	1 cut(s)	187
XhoI	CTCGAG	1 cut(s)	532
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.