Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0008689

Physical Location & Seq

Genomic Coordinates Reverse (-)

29516783 .. 29519516

Gene Structure 2734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1228900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGACGACGAGAACGACTGCGACGGCGGCCGCGACCATCTTGTTGATCGTGTGCTCGGTGGTTCTGACGGGTGAAGCCATTTGGATGAACTTACCCTCCTCCGATACCAAGTGCGTCTCTGAAGAAATCCAGAACAACGTCGTCGTTTTGGGCGATTACGTCGTCATCTCCGACGATCGCAGCCACTCCCCCACCATCTCCGTCAAGATTACATCGCCGTATGGGAACAATCTTCATCACGGGGAGAATGAAACAAATGGCCAGTTTGCCTTCACAACACAAGAATCTGGAACCTACCAGGCCTGTTTTTCGGTTGATGGTGACAAACGTGAAGGTAGTTCAGTAAGTGTCAGCCTTGACTGGAAAATTGGAATTGCAGCTCAGGATTGGGATTCAGTAGCAAGAAAAGAGAAGATTGAGGGTGTTGAGCTTGAACTACGGAAACTTGAACAAGTAGTGGAGGCCGTCCATGTGCATCTACTCTATCTCAAGAACAGAGAAGTGGATATGAGGAATTTGAGCGAACGAACTAACTCAAGGGTGGCGTGGTTTAGCATGATATCGTTGGGCCTGTGCATCGGAGTTTCAAGTATGCAGCTATGGCACTTGAAGAGATTTTTCCAAAAGAAGAAGCTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031984 GO:0033036 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098791 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

214

Amino Acids

23.79

Weight (kDa)

6.08

Isoelectric Point (pI)

29.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	26 - 208	2.2e-51	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09580 AT1G21900 AT1G57620
fragaria_vesca	FvH4_5g29520
malus_domestica	MD08G1228900.v1.1 MD08G1229000.v1.1 MD15G1422800.v1.1
prunus_persica	Prupe.1G568100_v2.0.a1 Prupe.1G568200_v2.0.a1
pyrus_communis	pycom08g19940 pycom15g37480
rosa_chinensis	RchiOBHm_Chr7g0222471
rosa_laevigata	RLG00000002056
rosa_multiflora	Rmu_sc0002349.1_g000022 Rmu_ssc0000146.1_g000008
rosa_roxburghii	Rroxscaffold_3G00236930
rosa_rugosa	Rorug07G0208800
rosa_samantha	Rh7AG351100 Rh7BG342100 Rh7CG368400 Rh7DG347900
rosa_wichuraiana	Rw7G029650 Rw7G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	32
AciI	CCGC	2 cut(s)	26, 30
AcoI	YGGCCR	2 cut(s)	27, 259
AcsI	RAATTY	1 cut(s)	514
AcuI	CTGAAG	1 cut(s)	141
AgsI	TTSAA	4 cut(s)	434, 449, 588, 610
AjnI	CCWGG	1 cut(s)	297
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
AluBI	AGCT	4 cut(s)	380, 430, 598, 634
AluI	AGCT	4 cut(s)	380, 430, 598, 634
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	121
AoxI	GGCC	5 cut(s)	27, 259, 300, 462, 568
ApeKI	GCWGC	3 cut(s)	180, 377, 595
ApoI	RAATTY	1 cut(s)	514
AspS9I	GGNCC	1 cut(s)	568
AsuHPI	GGTGA	2 cut(s)	83, 332
BalI	TGGCCA	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	3 cut(s)	192, 389, 607
BccI	CCATC	3 cut(s)	44, 203, 311
BceAI	ACGGC	3 cut(s)	39, 202, 449
BciT130I	CCWGG	1 cut(s)	299
BcoDI	GTCTC	1 cut(s)	121
BisI	GCNGC	5 cut(s)	27, 30, 181, 378, 596
BlsI	GCNGC	5 cut(s)	28, 31, 182, 379, 597
Bme1390I	CCNGG	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	568
BmiI	GGNNCC	1 cut(s)	292
BmrFI	CCNGG	1 cut(s)	299
BmsI	GCATC	2 cut(s)	484, 585
Bpu10I	CCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	2 cut(s)	473, 520
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bse1I	ACTGG	2 cut(s)	262, 365
BseBI	CCWGG	1 cut(s)	299
BseGI	GGATG	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	2 cut(s)	262, 365
BseRI	GAGGAG	1 cut(s)	88
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	3 cut(s)	192, 389, 607
Bsh1236I	CGCG	1 cut(s)	32
Bsh1285I	CGRYCG	2 cut(s)	30, 178
BshFI	GGCC	5 cut(s)	29, 261, 302, 464, 570
BsiEI	CGRYCG	2 cut(s)	30, 178
BsiHKAI	GWGCWC	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	121
BsmBI	CGTCTC	1 cut(s)	121
BsnI	GGCC	5 cut(s)	29, 261, 302, 464, 570
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	45, 175
BspACI	CCGC	2 cut(s)	26, 30
BspANI	GGCC	5 cut(s)	29, 261, 302, 464, 570
BspCNI	CTCAG	1 cut(s)	394
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	262, 365
BssMI	GATC	2 cut(s)	45, 175
Bst2UI	CCWGG	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	605
BstDEI	CTNAG	1 cut(s)	381
BstF5I	GGATG	1 cut(s)	90
BstFNI	CGCG	1 cut(s)	32
BstKTI	GATC	2 cut(s)	48, 178
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	2 cut(s)	45, 175
BstMCI	CGRYCG	2 cut(s)	30, 178
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 601
BstNI	CCWGG	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	297
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	3 cut(s)	192, 389, 607
BstZI	CGGCCG	1 cut(s)	27
BsuRI	GGCC	5 cut(s)	29, 261, 302, 464, 570
BtgZI	GCGATG	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	90
CciNI	GCGGCCGC	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	568
CseI	GACGC	1 cut(s)	103
CviAII	CATG	2 cut(s)	470, 556
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	2 cut(s)	47, 177
DpnII	GATC	2 cut(s)	45, 175
EaeI	YGGCCR	2 cut(s)	27, 259
EagI	CGGCCG	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	605
EarI	CTCTTC	1 cut(s)	605
EclXI	CGGCCG	1 cut(s)	27
Eco147I	AGGCCT	1 cut(s)	302
Eco32I	GATATC	1 cut(s)	561
Eco52I	CGGCCG	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	297
EcoRV	GATATC	1 cut(s)	561
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	2 cut(s)	473, 559
FaiI	YATR	6 cut(s)	222, 471, 509, 557, 593, 601
FatI	CATG	2 cut(s)	469, 555
Fnu4HI	GCNGC	5 cut(s)	27, 30, 181, 378, 596
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	5 cut(s)	27, 30, 181, 378, 596
GluI	GCNGC	5 cut(s)	27, 30, 181, 378, 596
HaeIII	GGCC	5 cut(s)	29, 261, 302, 464, 570
HgaI	GACGC	1 cut(s)	103
Hin1II	CATG	2 cut(s)	473, 559
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	2 cut(s)	284, 392
HphI	GGTGA	2 cut(s)	83, 332
Hpy188I	TCNGA	5 cut(s)	66, 103, 121, 172, 581
Hpy188III	TCNNGA	5 cut(s)	130, 205, 288, 383, 490
Hpy99I	CGWCG	6 cut(s)	10, 25, 143, 146, 164, 176
HpyAV	CCTTC	2 cut(s)	280, 326
HpyCH4IV	ACGT	3 cut(s)	138, 159, 328
HpyCH4V	TGCA	4 cut(s)	377, 475, 576, 595
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 601
HpyF3I	CTNAG	1 cut(s)	381
HpySE526I	ACGT	3 cut(s)	138, 159, 328
Hsp92II	CATG	2 cut(s)	473, 559
Kzo9I	GATC	2 cut(s)	45, 175
LpnPI	CCDG	9 cut(s)	143, 273, 275, 284, 311, 316, 346, 368, 584
Lsp1109I	GCAGC	3 cut(s)	192, 389, 607
LweI	GCATC	2 cut(s)	484, 585
MaeII	ACGT	3 cut(s)	138, 159, 328
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	2 cut(s)	47, 177
MboI	GATC	2 cut(s)	45, 175
MboII	GAAGA	5 cut(s)	134, 224, 424, 622, 640
MhlI	GDGCHC	1 cut(s)	56
MlsI	TGGCCA	1 cut(s)	261
MluCI	AATT	3 cut(s)	366, 372, 514
MluNI	TGGCCA	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	5 cut(s)	106, 109, 412, 454, 504
Mox20I	TGGCCA	1 cut(s)	261
MscI	TGGCCA	1 cut(s)	261
MslI	CAYNNNNRTG	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	299
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	26, 601
NdeII	GATC	2 cut(s)	45, 175
NlaIII	CATG	2 cut(s)	473, 559
NlaIV	GGNNCC	1 cut(s)	292
NmuCI	GTSAC	1 cut(s)	320
NotI	GCGGCCGC	1 cut(s)	27
PceI	AGGCCT	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	4 cut(s)	11, 29, 150, 168
PfeI	GAWTC	2 cut(s)	284, 392
PkrI	GCNGC	5 cut(s)	28, 31, 182, 379, 597
Ple19I	CGATCG	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	568
PvuI	CGATCG	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	83
SatI	GCNGC	5 cut(s)	27, 30, 181, 378, 596
Sau3AI	GATC	2 cut(s)	45, 175
Sau96I	GGNCC	1 cut(s)	568
ScrFI	CCNGG	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	9 cut(s)	141, 162, 296, 331, 337, 382, 432, 600, 636
SfaNI	GCATC	2 cut(s)	484, 585
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	2 cut(s)	488, 535
SmoI	CTYRAG	2 cut(s)	488, 535
Sse9I	AATT	3 cut(s)	366, 372, 514
SseBI	AGGCCT	1 cut(s)	302
SsiI	CCGC	2 cut(s)	26, 30
StuI	AGGCCT	1 cut(s)	302
StyD4I	CCNGG	1 cut(s)	297
TaiI	ACGT	3 cut(s)	141, 162, 331
TasI	AATT	3 cut(s)	366, 372, 514
TauI	GCSGC	2 cut(s)	29, 32
TfiI	GAWTC	2 cut(s)	284, 392
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	3 cut(s)	180, 377, 595
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	3 cut(s)	101, 224, 264
TspGWI	ACGGA	2 cut(s)	190, 454
XapI	RAATTY	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.