Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008689

Physical Location & Seq

Genomic Coordinates Reverse (-)

37420160 .. 37424152

Gene Structure 3993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g37480.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGACGACGACGAGGAGTTGGCGTGGCAGTGCGGTTGCTGCCGCCATCGTGTTGGTCCTGTGCTTGGTACGGACTGGTCAAGCCATCTGGATCACCTTACCTTCCTCCGGCACGAAGTGCGTCTCGGAGGAAATCCAGAACAACGTCGTCGTTTTGGCCGATTACGTCGTCATCCCCGATGATCACTCCCACTCCCCCACCATCTCCGCTAAGGTGACATCACCGTATGGGAACAATCTTCATCAAAGGGAGAATGCAACACACGGTCAGTTTGCATTCACGACTCATGAGGCTGGAAACTACTTGGCATGTTTTTGGGTTGATGGTAACAATCCTGGAGGTGGAGGGGTGAGTGTCAACCTTGACTGGAAAACTGGAATAGCAGCTAAGGATTGGGAATCAGTAGCAAGAAAAGAGAAAATTGAGGGTCTTGAGCTTGAGCTGCGGAAACTCGAAGGAGCAGTTGAGGCCATCCACGAGAATCTACTTTATCTCAAGGGCAGAGAATCGGAGATGAGGGACGTGAGCGAAAGAACAAATGCCCGGGTGGCGTGGTTTAGCATGATGTCGTTGGCTGTCTGCATTATTGTTTCGACCCTTCAGTTATGGCACTTGAAGAATTTTTTCCAAAAGAAGAAGCTTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031984 GO:0033036 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098791 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

216

Amino Acids

23.84

Weight (kDa)

7.05

Isoelectric Point (pI)

26.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09580 AT1G21900 AT1G57620
fragaria_vesca	FvH4_5g29520
malus_domestica	MD08G1228900.v1.1 MD08G1229000.v1.1 MD15G1422800.v1.1
prunus_persica	Prupe.1G568100_v2.0.a1 Prupe.1G568200_v2.0.a1
pyrus_communis	pycom08g19940 pycom15g37480
rosa_chinensis	RchiOBHm_Chr7g0222471
rosa_laevigata	RLG00000002056
rosa_multiflora	Rmu_sc0002349.1_g000022 Rmu_ssc0000146.1_g000008
rosa_roxburghii	Rroxscaffold_3G00236930
rosa_rugosa	Rorug07G0208800
rosa_samantha	Rh7AG351100 Rh7BG342100 Rh7CG368400 Rh7DG347900
rosa_wichuraiana	Rw7G029650 Rw7G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	32, 42, 207, 445
AclWI	GGATC	1 cut(s)	98
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	619
AcuI	CTGAAG	1 cut(s)	584
AdeI	CACNNNGTG	1 cut(s)	117
AfaI	GTAC	1 cut(s)	69
AfiI	CCNNNNNNNGG	3 cut(s)	64, 107, 341
AgsI	TTSAA	1 cut(s)	616
AjiI	CACGTC	1 cut(s)	523
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	4 cut(s)	386, 436, 442, 640
AluI	AGCT	4 cut(s)	386, 436, 442, 640
Alw26I	GTCTC	1 cut(s)	127
AlwI	GGATC	1 cut(s)	98
Ama87I	CYCGRG	1 cut(s)	543
AoxI	GGCC	2 cut(s)	156, 468
ApeKI	GCWGC	3 cut(s)	38, 383, 442
ApoI	RAATTY	1 cut(s)	619
Asp700I	GAANNNNTTC	1 cut(s)	623
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	2 cut(s)	544, 545
AsuHPI	GGTGA	4 cut(s)	85, 213, 226, 361
AvaI	CYCGRG	1 cut(s)	543
AvaII	GGWCC	1 cut(s)	55
BauI	CACGAG	1 cut(s)	476
BbvI	GCAGC	3 cut(s)	25, 395, 429
BccI	CCATC	5 cut(s)	53, 92, 209, 317, 479
BciT130I	CCWGG	1 cut(s)	336
BclI	TGATCA	1 cut(s)	181
BcnI	CCSGG	2 cut(s)	544, 545
BcoDI	GTCTC	1 cut(s)	127
BglI	GCCNNNNNGGC	1 cut(s)	548
BisI	GCNGC	4 cut(s)	39, 42, 384, 443
BlsI	GCNGC	4 cut(s)	40, 43, 385, 444
Bme1390I	CCNGG	3 cut(s)	336, 544, 545
Bme18I	GGWCC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	543
BmgBI	CACGTC	1 cut(s)	523
BmgT120I	GGNCC	1 cut(s)	55
BmrFI	CCNGG	3 cut(s)	336, 544, 545
BpmI	CTGGAG	1 cut(s)	357
Bpu10I	CCTNAGC	2 cut(s)	210, 387
BpuEI	CTTGAG	3 cut(s)	452, 458, 479
BpuMI	CCSGG	2 cut(s)	544, 545
BsaJI	CCNNGG	1 cut(s)	543
BsaXI	ACNNNNNCTCC	4 cut(s)	7, 37, 176, 206
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 107, 341
Bse1I	ACTGG	3 cut(s)	79, 371, 379
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	543
BseGI	GGATG	2 cut(s)	171, 471
BseLI	CCNNNNNNNGG	3 cut(s)	64, 107, 341
BseNI	ACTGG	3 cut(s)	79, 371, 379
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	3 cut(s)	25, 395, 429
BshFI	GGCC	2 cut(s)	158, 470
BsiHKCI	CYCGRG	1 cut(s)	543
BsiSI	CCGG	2 cut(s)	108, 544
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	3 cut(s)	64, 107, 341
BsmAI	GTCTC	1 cut(s)	127
BsmBI	CGTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	533
BsmI	GAATGC	2 cut(s)	259, 275
BsnI	GGCC	2 cut(s)	158, 470
BsoBI	CYCGRG	1 cut(s)	543
Bsp143I	GATC	2 cut(s)	90, 181
BspACI	CCGC	4 cut(s)	32, 42, 207, 445
BspANI	GGCC	2 cut(s)	158, 470
BspHI	TCATGA	1 cut(s)	286
BspPI	GGATC	1 cut(s)	98
BsrI	ACTGG	3 cut(s)	79, 371, 379
BssECI	CCNNGG	1 cut(s)	543
BssMI	GATC	2 cut(s)	90, 181
BssSI	CACGAG	1 cut(s)	476
Bst2BI	CACGAG	1 cut(s)	476
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	2 cut(s)	225, 266
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstDEI	CTNAG	2 cut(s)	210, 387
BstF5I	GGATG	2 cut(s)	171, 471
BstKTI	GATC	2 cut(s)	93, 184
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	2 cut(s)	90, 181
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 117, 442, 467, 548
BstNI	CCWGG	1 cut(s)	336
BstNSI	RCATGY	1 cut(s)	312
BstSCI	CCNGG	3 cut(s)	334, 542, 543
BstV1I	GCAGC	3 cut(s)	25, 395, 429
BstXI	CCANNNNNNTGG	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	158, 470
BtrI	CACGTC	1 cut(s)	523
BtsCI	GGATG	2 cut(s)	171, 471
BtsI	GCAGTG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	34
CciI	TCATGA	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	55
Cfr9I	CCCGGG	1 cut(s)	543
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	3 cut(s)	287, 309, 562
CviJI	RGCY	9 cut(s)	83, 158, 293, 386, 436, 442, 470, 575, 640
CviKI_1	RGCY	9 cut(s)	83, 158, 293, 386, 436, 442, 470, 575, 640
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	2 cut(s)	210, 387
DpnI	GATC	2 cut(s)	92, 183
DpnII	GATC	2 cut(s)	90, 181
DraIII	CACNNNGTG	1 cut(s)	117
EaeI	YGGCCR	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	584
Eco88I	CYCGRG	1 cut(s)	543
EcoRII	CCWGG	1 cut(s)	334
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	3 cut(s)	290, 312, 565
FaiI	YATR	5 cut(s)	228, 288, 310, 563, 607
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	3 cut(s)	286, 308, 561
FbaI	TGATCA	1 cut(s)	181
Fnu4HI	GCNGC	4 cut(s)	39, 42, 384, 443
FokI	GGATG	2 cut(s)	158, 458
Fsp4HI	GCNGC	4 cut(s)	39, 42, 384, 443
GluI	GCNGC	4 cut(s)	39, 42, 384, 443
GsuI	CTGGAG	1 cut(s)	357
HaeIII	GGCC	2 cut(s)	158, 470
HapII	CCGG	2 cut(s)	108, 544
HgaI	GACGC	1 cut(s)	109
Hin1II	CATG	3 cut(s)	290, 312, 565
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	4 cut(s)	283, 398, 481, 506
HpaII	CCGG	2 cut(s)	108, 544
HphI	GGTGA	4 cut(s)	85, 213, 226, 361
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	2 cut(s)	127, 511
Hpy188III	TCNNGA	5 cut(s)	88, 136, 280, 287, 431
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	5 cut(s)	10, 13, 149, 152, 170
HpyAV	CCTTC	3 cut(s)	111, 449, 608
HpyCH4III	ACNGT	2 cut(s)	225, 266
HpyCH4IV	ACGT	3 cut(s)	144, 165, 522
HpyCH4V	TGCA	3 cut(s)	257, 275, 582
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 117, 442, 467, 548
HpyF3I	CTNAG	2 cut(s)	210, 387
HpySE526I	ACGT	3 cut(s)	144, 165, 522
Hsp92II	CATG	3 cut(s)	290, 312, 565
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	90, 181
LmnI	GCTCC	1 cut(s)	458
Lsp1109I	GCAGC	3 cut(s)	25, 395, 429
MaeII	ACGT	3 cut(s)	144, 165, 522
MaeIII	GTNAC	2 cut(s)	214, 326
MalI	GATC	2 cut(s)	92, 183
MboI	GATC	2 cut(s)	90, 181
MboII	GAAGA	3 cut(s)	230, 628, 646
MluCI	AATT	2 cut(s)	420, 619
MlyI	GAGTC	1 cut(s)	277
MnlI	CCTC	9 cut(s)	6, 115, 121, 283, 332, 338, 418, 460, 510
MroXI	GAANNNNTTC	1 cut(s)	623
MseI	TTAA	1 cut(s)	646
MspI	CCGG	2 cut(s)	108, 544
MspR9I	CCNGG	3 cut(s)	336, 544, 545
Mva1269I	GAATGC	2 cut(s)	259, 275
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	5 cut(s)	38, 117, 442, 467, 548
NciI	CCSGG	2 cut(s)	544, 545
NdeII	GATC	2 cut(s)	90, 181
NlaIII	CATG	3 cut(s)	290, 312, 565
NmuCI	GTSAC	1 cut(s)	214
NspI	RCATGY	1 cut(s)	312
PagI	TCATGA	1 cut(s)	286
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 174
PctI	GAATGC	2 cut(s)	259, 275
PdmI	GAANNNNTTC	1 cut(s)	623
PfeI	GAWTC	3 cut(s)	398, 481, 506
PfoI	TCCNGGA	1 cut(s)	334
PkrI	GCNGC	4 cut(s)	40, 43, 385, 444
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspPI	GGNCC	1 cut(s)	55
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	646
SatI	GCNGC	4 cut(s)	39, 42, 384, 443
Sau3AI	GATC	2 cut(s)	90, 181
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	3 cut(s)	336, 544, 545
SinI	GGWCC	1 cut(s)	55
SmaI	CCCGGG	1 cut(s)	545
SmlI	CTYRAG	3 cut(s)	431, 437, 494
SmoI	CTYRAG	3 cut(s)	431, 437, 494
Sse9I	AATT	2 cut(s)	420, 619
SsiI	CCGC	4 cut(s)	32, 42, 207, 445
StyD4I	CCNGG	3 cut(s)	334, 542, 543
TaaI	ACNGT	2 cut(s)	225, 266
TaiI	ACGT	3 cut(s)	147, 168, 525
TaqI	TCGA	2 cut(s)	453, 593
TasI	AATT	2 cut(s)	420, 619
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	3 cut(s)	398, 481, 506
Tru1I	TTAA	1 cut(s)	646
Tru9I	TTAA	1 cut(s)	646
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	3 cut(s)	38, 383, 442
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	1 cut(s)	230
TspGWI	ACGGA	1 cut(s)	85
TspMI	CCCGGG	1 cut(s)	543
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	55
XapI	RAATTY	1 cut(s)	619
XceI	RCATGY	1 cut(s)	312
XmaI	CCCGGG	1 cut(s)	543
XmnI	GAANNNNTTC	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.