Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000146.1

Orthogroup ID

OG0008689

Physical Location & Seq

Genomic Coordinates Forward (+)

39753 .. 43461

Gene Structure 3709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000146.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atgatgatgaggagtgcgagcttgatcctcctattcctgtttctgttgttacggccgggtcaagcaatttggctgactctaccctccagcggcaccaagtgcgtctccgaggaaatccagaacaacgtcgtcgttttggccgattacgtcgttatttccgacgaccactcccactcccccaccatctccgccaaggtgacatcaccttatggcaacaatcttcacctcagggagaatgcaacacatggtcagtttgccttcaccactcatgaggctggtaactacctggcatgtttttggattgatggtcataatccaggaggtggtgcggtaagtgtcaatcttgactggaaaactgggattggagctaaggattgggaatcagtagcgagaaaagagaagattgagggtcttgagcttgagctgcggaaacttgaaggagcagtggaagccatccatgaaaatctactctttctcaagagcagagaagcggagatgaggagtgtcagtgaaaagacaaacaccagggtggcgtggtttagcataatgtcattgggcgtttgcattgcagtgtcgactcttcagttatggcacttgaagcaatttttccaaaagaagaagctgatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031984 GO:0033036 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098791 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

209

Amino Acids

23.35

Weight (kDa)

7.09

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09580 AT1G21900 AT1G57620
fragaria_vesca	FvH4_5g29520
malus_domestica	MD08G1228900.v1.1 MD08G1229000.v1.1 MD15G1422800.v1.1
prunus_persica	Prupe.1G568100_v2.0.a1 Prupe.1G568200_v2.0.a1
pyrus_communis	pycom08g19940 pycom15g37480
rosa_chinensis	RchiOBHm_Chr7g0222471
rosa_laevigata	RLG00000002056
rosa_multiflora	Rmu_sc0002349.1_g000022 Rmu_ssc0000146.1_g000008
rosa_roxburghii	Rroxscaffold_3G00236930
rosa_rugosa	Rorug07G0208800
rosa_samantha	Rh7AG351100 Rh7BG342100 Rh7CG368400 Rh7DG347900
rosa_wichuraiana	Rw7G029650 Rw7G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	323
AccI	GTMKAC	1 cut(s)	575
AciI	CCGC	5 cut(s)	90, 189, 329, 427, 491
AclWI	GGATC	1 cut(s)	19
AcoI	YGGCCR	2 cut(s)	53, 138
AcuI	CTGAAG	1 cut(s)	566
AdeI	CACNNNGTG	1 cut(s)	99
AfiI	CCNNNNNNNGG	2 cut(s)	89, 323
AgsI	TTSAA	2 cut(s)	437, 598
AjnI	CCWGG	3 cut(s)	285, 316, 524
AleI	CACNNNNGTG	1 cut(s)	527
AluBI	AGCT	5 cut(s)	21, 368, 418, 424, 622
AluI	AGCT	5 cut(s)	21, 368, 418, 424, 622
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	1 cut(s)	19
AoxI	GGCC	2 cut(s)	53, 138
ApeKI	GCWGC	1 cut(s)	424
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	4 cut(s)	195, 208, 215, 253
AxyI	CCTNAGG	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	411
BccI	CCATC	3 cut(s)	191, 299, 461
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	3 cut(s)	287, 318, 526
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	109
BisI	GCNGC	2 cut(s)	91, 425
BlsI	GCNGC	2 cut(s)	92, 426
Bme1390I	CCNGG	4 cut(s)	57, 287, 318, 526
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	4 cut(s)	57, 287, 318, 526
BmrI	ACTGGG	1 cut(s)	366
BmuI	ACTGGG	1 cut(s)	366
BpmI	CTGGAG	1 cut(s)	70
Bpu10I	CCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	3 cut(s)	434, 440, 461
BpuMI	CCSGG	1 cut(s)	57
BsaJI	CCNNGG	3 cut(s)	108, 192, 525
BsaXI	ACNNNNNCTCC	6 cut(s)	152, 158, 182, 188, 493, 523
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 323
Bse1I	ACTGG	2 cut(s)	353, 361
Bse21I	CCTNAGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	564
BseBI	CCWGG	3 cut(s)	287, 318, 526
BseDI	CCNNGG	3 cut(s)	108, 192, 525
BseGI	GGATG	1 cut(s)	453
BseLI	CCNNNNNNNGG	2 cut(s)	89, 323
BseMI	GCAATG	1 cut(s)	564
BseMII	CTCAG	1 cut(s)	241
BseNI	ACTGG	2 cut(s)	353, 361
BseRI	GAGGAG	2 cut(s)	25, 514
BseX3I	CGGCCG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	411
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	2 cut(s)	55, 140
BshNI	GGYRCC	1 cut(s)	92
BsiEI	CGRYCG	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	56
BslI	CCNNNNNNNGG	2 cut(s)	89, 323
BsmAI	GTCTC	1 cut(s)	109
BsmBI	CGTCTC	1 cut(s)	109
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	2 cut(s)	55, 140
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	5 cut(s)	90, 189, 329, 427, 491
BspANI	GGCC	2 cut(s)	55, 140
BspCNI	CTCAG	1 cut(s)	240
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	19
BspT107I	GGYRCC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	564
BsrI	ACTGG	2 cut(s)	353, 361
BssECI	CCNNGG	3 cut(s)	108, 192, 525
BssMI	GATC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	3 cut(s)	287, 318, 526
Bst6I	CTCTTC	1 cut(s)	585
BstAPI	GCANNNNNTGC	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	2 cut(s)	227, 369
BstF5I	GGATG	1 cut(s)	453
BstKTI	GATC	1 cut(s)	27
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	24
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 424, 449, 598
BstNI	CCWGG	3 cut(s)	287, 318, 526
BstNSI	RCATGY	1 cut(s)	294
BstSCI	CCNGG	4 cut(s)	55, 285, 316, 524
BstV1I	GCAGC	1 cut(s)	411
BstZI	CGGCCG	1 cut(s)	53
Bsu36I	CCTNAGG	1 cut(s)	227
BsuRI	GGCC	2 cut(s)	55, 140
BtsCI	GGATG	1 cut(s)	453
BtsI	GCAGTG	2 cut(s)	450, 576
BtsIMutI	CAGTG	3 cut(s)	450, 514, 576
Cac8I	GCNNGC	1 cut(s)	19
CciI	TCATGA	1 cut(s)	268
CseI	GACGC	1 cut(s)	91
CviAII	CATG	4 cut(s)	245, 269, 291, 458
DdeI	CTNAG	2 cut(s)	227, 369
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
DraIII	CACNNNGTG	1 cut(s)	99
EaeI	YGGCCR	2 cut(s)	53, 138
EagI	CGGCCG	1 cut(s)	53
Eam1104I	CTCTTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	585
EciI	GGCGGA	1 cut(s)	178
EclXI	CGGCCG	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	192
Eco52I	CGGCCG	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	566
Eco81I	CCTNAGG	1 cut(s)	227
EcoRII	CCWGG	3 cut(s)	285, 316, 524
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	4 cut(s)	248, 272, 294, 461
FaiI	YATR	8 cut(s)	210, 246, 270, 292, 312, 459, 545, 589
FatI	CATG	4 cut(s)	244, 268, 290, 457
FblI	GTMKAC	1 cut(s)	575
Fnu4HI	GCNGC	2 cut(s)	91, 425
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	2 cut(s)	91, 425
GluI	GCNGC	2 cut(s)	91, 425
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	2 cut(s)	55, 140
HapII	CCGG	1 cut(s)	56
HgaI	GACGC	1 cut(s)	91
Hin1II	CATG	4 cut(s)	248, 272, 294, 461
HincII	GTYRAC	1 cut(s)	576
HindII	GTYRAC	1 cut(s)	576
HinfI	GANTC	3 cut(s)	76, 380, 577
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	4 cut(s)	195, 208, 215, 253
Hpy166II	GTNNAC	1 cut(s)	576
Hpy188I	TCNGA	2 cut(s)	109, 160
Hpy188III	TCNNGA	5 cut(s)	118, 269, 344, 413, 478
Hpy8I	GTNNAC	1 cut(s)	576
Hpy99I	CGWCG	4 cut(s)	131, 134, 152, 164
HpyAV	CCTTC	2 cut(s)	268, 431
HpyCH4IV	ACGT	2 cut(s)	126, 147
HpyCH4V	TGCA	3 cut(s)	239, 564, 569
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 424, 449, 598
HpyF3I	CTNAG	2 cut(s)	227, 369
HpySE526I	ACGT	2 cut(s)	126, 147
Hsp92II	CATG	4 cut(s)	248, 272, 294, 461
Kzo9I	GATC	1 cut(s)	24
LmnI	GCTCC	2 cut(s)	365, 440
Lsp1109I	GCAGC	1 cut(s)	411
MaeII	ACGT	2 cut(s)	126, 147
MaeIII	GTNAC	3 cut(s)	48, 196, 278
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	4 cut(s)	212, 412, 572, 628
MluCI	AATT	2 cut(s)	66, 602
MlyI	GAGTC	2 cut(s)	70, 571
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	9 cut(s)	3, 38, 94, 103, 236, 265, 314, 400, 492
MslI	CAYNNNNRTG	2 cut(s)	527, 569
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	4 cut(s)	57, 287, 318, 526
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	3 cut(s)	287, 318, 526
MwoI	GCNNNNNNNGC	4 cut(s)	99, 424, 449, 598
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	4 cut(s)	248, 272, 294, 461
NlaIV	GGNNCC	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	1 cut(s)	294
OliI	CACNNNNGTG	1 cut(s)	527
PagI	TCATGA	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 156
PctI	GAATGC	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	380
PflMI	CCANNNNNTGG	1 cut(s)	323
PfoI	TCCNGGA	1 cut(s)	316
PkrI	GCNGC	2 cut(s)	92, 426
PleI	GAGTC	2 cut(s)	70, 571
PpsI	GAGTC	2 cut(s)	70, 571
Psp6I	CCWGG	3 cut(s)	285, 316, 524
PspGI	CCWGG	3 cut(s)	285, 316, 524
PspN4I	GGNNCC	1 cut(s)	94
RseI	CAYNNNNRTG	2 cut(s)	527, 569
SalI	GTCGAC	1 cut(s)	574
SatI	GCNGC	2 cut(s)	91, 425
Sau3AI	GATC	1 cut(s)	24
SchI	GAGTC	2 cut(s)	70, 571
ScrFI	CCNGG	4 cut(s)	57, 287, 318, 526
SmiMI	CAYNNNNRTG	2 cut(s)	527, 569
SmlI	CTYRAG	3 cut(s)	413, 419, 476
SmoI	CTYRAG	3 cut(s)	413, 419, 476
Sse9I	AATT	2 cut(s)	66, 602
SsiI	CCGC	5 cut(s)	90, 189, 329, 427, 491
StyD4I	CCNGG	4 cut(s)	55, 285, 316, 524
StyI	CCWWGG	1 cut(s)	192
TaiI	ACGT	2 cut(s)	129, 150
TaqI	TCGA	1 cut(s)	575
TasI	AATT	2 cut(s)	66, 602
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	380
TscAI	CASTG	3 cut(s)	450, 514, 576
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	474
TspRI	CASTG	3 cut(s)	450, 514, 576
Van91I	CCANNNNNTGG	1 cut(s)	323
XceI	RCATGY	1 cut(s)	294
XmiI	GTMKAC	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.