AT1G10170

NF-X1-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011120
Physical Location & Seq
Reverse (-)
3333504 .. 3338188
4685 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10170.2

Sequence Viewer

Length: 3567 bp
ATGAGCTTTCAAGTCAGGCGAGATAGGAGCGATGATAGGTCTCATCGATTCAATCATCAGCAAACGTGGATTCCTAGAAACTCATCTACCTCGAGCGTGGTGGTAAATGAGCCTTTGCTTCCTCCTAATACAGATAGAAATTCTGAAACCCTTGATGCTGGTTCTGCATCCCGTCCTGTTTATCTGCAAAGGCAGCATAACGCTTCTGGTCCTCCGTCCTATAACCACCACCAAAGGAGTAGTAACATTGGTCCACCTCCACCTAATCAACATAGAAGATATAATGCGCCTGATAACCAGCATCAAAGGAGTGATAACATTGGTCCACCTCAACCTAATCAACATAGAAGATATAATGCGCCTGATAACCAGCATCAAAGGAGTGATAACAGTGGTCCACCTCAACCTTATCGACATAGAAGAAATAATGCTCCTGAGAACCAGCACCAAAGGAGTGATAACATTGGTCCACCTCCACCTAATCGACAAAGAAGGAATAATGCTTCTGGAACTCTGCCAGATAATCGCCAAAGAGTTGCATCTAGGACGCGGCCTGTGAATCAGGGGAAAAGGGTAGCGAAGGAGGAGAATGTTGTGTTGACAGACCCAAACTTGCCTCAACTTGTTCAAGAGTTACAGGAGAAGCTTGTCAAGAGTTCTATTGAGTGTATGATTTGTTATGACAAGGTTGGGAGGTCTGCCAATATCTGGTCATGCTCCAGCTGTTATTCCATCTTCCATATCAACTGTATCAAGAGGTGGGCTCGAGCACCAACTTCAGTTGATTTGCTAGCTGAGAAAAACCAAGGTGATAACTGGAGATGTCCAGGTTGCCAATCTGTACAGTTGACATCATCTAAAGAGATTTCCTATCGGTGCTTTTGTGGAAAGAGAAGAGATCCACCGTCTGACCCATATCTCACTCCACACTCATGCGGGGAACCATGTGGGAAACCGCTGGAGAAAGAGTTTGCACCTGCTGAGACGACTGAAGAGGATCTTTGTCCTCATGTATGTGTTTTGCAGTGTCATCCTGGTCCATGTCCTCCCTGTAAAGCCTTTGCTCCACCTCGTAGCTGTCCTTGTGGGAAAAAGATGGTTACTACTAGATGCTCCGAGCGGAGATCTGATCTTGTTTGTGGGCAGCGTTGCGATAAGCTTCTTAGTTGCGGGCGTCATCAATGTGAAAGGACATGTCATGTTGGCCCTTGTGATCCTTGTCAGGTACTGGTAAATGCCACATGTTTCTGCAAGAAAAAAGTGGAGACTGTCATTTGCGGTGATATGAATGTGAAGGGGGAATTGAAAGCAGAAGATGGTGTCTATTCATGCAGTTTTAACTGTGGGAAGCCTCTTGGATGTGGTAATCATTTCTGTTCCGAGGTATGCCATCCTGGACCTTGCGGGGACTGTGACTTACTGCCCAGTAGAGTTAAGACATGCTATTGTGGGAATACGCGTTTAGAAGAACAGATCAGGCAGAGTTGCTTGGACCCAATTCCTTCTTGTTCAAATGTATGTAGGAAGCTTCTTCCTTGTAGGTTACATACTTGCAATGAGATGTGCCATGCAGGTGATTGCCCGCCTTGTTTAGTCCAAGTTAACCAGAAATGCCGGTGTGGGTCAACATCCAGGGCTGTGGAATGCTACATAACAACTTCCTCAGAGGCAGAGAAGTTTGTGTGCGCTAAGCCATGTGGACGTAAGAAGAACTGTGGGAGACATAGATGTAGCGAGCGTTGCTGCCCTCTCTTGAACGGGAAGAAGAATGATTTATCTGGCGATTGGGACCCACATGTCTGCCAAATACCTTGTCAGAAGAAGCTAAGGTGTGGGCAGCATTCCTGTGAATCTTTATGTCACAGTGGACATTGCCCTCCTTGTCTCGAGATGATCTTCACTGATCTTACATGTGCTTGTGGAAGAACTTCGATTCCTCCTCCACTATCATGTGGGACACCTGTTCCTAGCTGTCAGCTTCCATGCCCGATTCCTCAGCCTTGTGGCCATTCTGATACGCATGGATGCCATTTTGGAGATTGTCCTCCTTGTTCTACCCCTGTGGAAAAGAAGTGCGTTGGTGGTCATGTGGTTCTCAGAAACATACCCTGTGGGTTGAAAGACATTAGATGTACCAAGATTTGTGGAAAGACGAGGCGTTGTGGCATGCATGCTTGTGCCAGAACTTGTCACCCGGAGCCTTGTGACAGCTTCAATGAATCTGAAGCAGGTATGCGTGTTACGTGTAGACAGAAATGTGGTGCTCCTAGAACAGATTGCAGACACACTTGTGCAGCACTCTGCCATCCTTCTGCGCCTTGCCCTGACCTAAGATGTGAATTTTCAGTCACAATTACTTGTTCATGTGGTCGTATAACCGCTACGGTCCCTTGTGATGCTGGGGGAAGAAGTGCCAACGGTTCTAATGTTTACTGTGCGGCCTATGATGAAGCCTCTGTTTTACAGAAGCTTCCAGCTCCACTTCAGCCTGTTGAATCGAGCGGAAACCGTATCCCCCTCGGGCAGAGAAAGCTTTCGTGTGATGATGAGTGTGCGAAGCTGGAGCGTAAGCGGGTTCTTCAAGATGCATTTGATATAACTCCCCCAAATCTGGAGGCATTACATTTCAGCGAGAATTCTGCTATGACAGAGATTATTTCAGACCTTTATAGGCGTGATCCAAAGTGGGTACTGGCTGTTGAAGAGCGCTGCAAGTTCTTGGTACTTGGGAAAGCAAGAGGAAGCACAAGTGCCCTTAAGGTCCATATCTTCTGCCCGATGCAGAAGGATAAACGAGACACGGTTCGACTTATAGCTGAGAGGTGGAAACTTGGTGTTAGCAACGCAGGGTGGGAGCCAAAACGGTTTACAGTGGTTCACGTAACAGCAAAATCGAAACCGCCAACAAGGATCATTGGAGCTAGGGGTGGTGCTATCTCGATAGGAGGGCCACACCCACCGTTCTATGATTCGCTGGTGGATATGGATCCTGGACTTGTGGTTTCTTTTCTGGATCTTCCGAGAGAGGCGAATATCAGCGCCTTGGTACTGAGATTTGGGGGTGAATGTGAGCTTGTTTGGCTGAATGACAAGAATGCTTTAGCGGTGTTCCACGACCATGCCCGAGCTGCCACTGCCATGAGGAGGCTTGAGCACGGTTCAGTATATCATGGAGCTGTGGTTGTCCAGAGCGGCGGGCAATCTCCATCACTTAATAATGTATGGGGAAAATTACCTGGCAGCTCGGCGTGGGATGTTGACAAAGGAAATCCATGGAGGAGAGCTGTGATTCAGGAGAGTGATGACTCCTGGGGAGCTGAAGATTCCCCCATTGGAGGATCATCTACAGATGCTCAAGCCTCTGCGCTGAGATCAGCAAAGAGCAACTCTCCAATTGTTACCTCGGTTAACCGTTGGAGTGTTTTAGAGCCCAAGAAGGCCAGCACATCCACTTTGGAGCCAATTGCTCAGATAGAAGAGAGCAGTAGTTCAAAAACTACCGGTAAACAACCGGTGGAAGGCTCCGGTGAAGAAGTGGTGGATGACTGGGAGAAGGTATGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009696 GO:0009697 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010188 GO:0010310 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010817 GO:0016053 GO:0016070 GO:0016999 GO:0017000 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032774 GO:0032787 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046189 GO:0046394 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0098542 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05165 map05165
Pfam Domains
Protein Families
K_trans R3H zf-NF-X1

Protein Analysis

1188

Amino Acids

130.72

Weight (kDa)

8.54

Isoelectric Point (pI)

58.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_NFXL1 PF24435 913 - 991 7.8e-42 NFXL1 RRM-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011120)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10170 AT1G10170 AT1G10170 AT1G10170
fragaria_vesca FvH4_5g17660
malus_domestica MD06G1232100.v1.1 MD14G1238900.v1.1
prunus_persica Prupe.5G236400_v2.0.a1
pyrus_communis pycom06g20620 pycom14g19990
rosa_chinensis RchiOBHm_Chr7g0178011
rosa_laevigata RLG00000005482
rosa_multiflora Rmu_sc0013399.1_g000001
rosa_roxburghii Rroxscaffold_3G00275290
rosa_rugosa Rorug06G0412300
rosa_samantha Rh7AG011800 Rh7BG011200 Rh7CG011800 Rh7DG011800
rosa_wichuraiana Rw7G000930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 985, 1562
AasI GACNNNNNNGTC 1 cut(s) 1796
Acc36I ACCTGC 3 cut(s) 985, 1562, 2219
AccB7I CCANNNNNTGG 1 cut(s) 708
AccBSI CCGCTC 3 cut(s) 1120, 2502, 3192
AccI GTMKAC 1 cut(s) 2248
AccII CGCG 2 cut(s) 550, 1459
AclWI GGATC 9 cut(s) 893, 1005, 1208, 2672, 2918, 2981, 2994, 3021, 3346
AcoI YGGCCR 1 cut(s) 2005
AcsI RAATTY 3 cut(s) 139, 2339, 2635
AcuI CTGAAG 5 cut(s) 762, 1011, 2244, 2468, 3339
AcyI GRCGYC 1 cut(s) 1174
AfaI GTAC 6 cut(s) 843, 1227, 2134, 2691, 2724, 3048
AfeI AGCGCT 1 cut(s) 2708
AfiI CCNNNNNNNGG 5 cut(s) 708, 2611, 3144, 3335, 3518
AflII CTTAAG 1 cut(s) 2756
AflIII ACRYGT 6 cut(s) 1193, 1241, 1457, 1795, 1910, 2243
AgeI ACCGGT 2 cut(s) 3500, 3511
AjnI CCWGG 7 cut(s) 826, 1033, 1393, 1631, 2989, 3235, 3308
AleI CACNNNNGTG 1 cut(s) 2289
AloI GAACNNNNNNTCC 2 cut(s) 1918, 1950
Alw21I GWGCWC 3 cut(s) 772, 2266, 3156
Alw26I GTCTC 6 cut(s) 45, 977, 1259, 1714, 1889, 2790
AlwI GGATC 9 cut(s) 893, 1005, 1208, 2672, 2918, 2981, 2994, 3021, 3346
AlwNI CAGNNNCTG 1 cut(s) 1228
Ama87I CYCGRG 5 cut(s) 91, 765, 1886, 2519, 3123
Aor51HI AGCGCT 1 cut(s) 2708
AoxI GGCC 6 cut(s) 551, 1204, 2005, 2439, 2948, 3438
ApeKI GCWGC 8 cut(s) 193, 1144, 1743, 1837, 2294, 2709, 3128, 3240
ApoI RAATTY 3 cut(s) 139, 2339, 2635
ArsI GACNNNNNNTTYG 2 cut(s) 1798, 1830
AsiGI ACCGGT 2 cut(s) 3500, 3511
Asp700I GAANNNNTTC 2 cut(s) 1927, 2533
AspLEI GCGC 7 cut(s) 289, 361, 1688, 2317, 2709, 3041, 3367
AsuC2I CCSGG 1 cut(s) 2195
AsuHPI GGTGA 6 cut(s) 821, 1292, 1586, 2183, 3074, 3539
AsuNHI GCTAGC 1 cut(s) 790
AvaI CYCGRG 5 cut(s) 91, 765, 1886, 2519, 3123
BaeGI GKGCMC 1 cut(s) 2755
BalI TGGCCA 1 cut(s) 2007
BamHI GGATCC 1 cut(s) 2986
BanII GRGCYC 2 cut(s) 766, 3432
Bbv12I GWGCWC 3 cut(s) 772, 2266, 3156
BbvCI CCTCAGC 1 cut(s) 1995
BbvI GCAGC 8 cut(s) 205, 1156, 1730, 1849, 2306, 2696, 3115, 3252
BccI CCATC 6 cut(s) 740, 1090, 1310, 1398, 2313, 3214
BcgI CGANNNNNNTGC 2 cut(s) 2621, 2655
BciT130I CCWGG 7 cut(s) 828, 1035, 1395, 1633, 2991, 3237, 3310
BciVI GTATCC 1 cut(s) 2522
BcnI CCSGG 1 cut(s) 2195
BcoDI GTCTC 6 cut(s) 45, 977, 1259, 1714, 1889, 2790
BfaI CTAG 7 cut(s) 75, 543, 791, 1107, 1968, 2268, 2922
BfmI CTRYAG 1 cut(s) 3345
BfoI RGCGCY 2 cut(s) 2710, 3042
BfrI CTTAAG 1 cut(s) 2756
BfuAI ACCTGC 3 cut(s) 985, 1562, 2219
BfuI GTATCC 1 cut(s) 2522
BglII AGATCT 1 cut(s) 1124
BlpI GCTNAGC 1 cut(s) 1689
Bme1390I CCNGG 8 cut(s) 828, 1035, 1395, 1633, 2195, 2991, 3237, 3310
BmeT110I CYCGRG 5 cut(s) 91, 765, 1886, 2519, 3123
BmrFI CCNGG 8 cut(s) 828, 1035, 1395, 1633, 2195, 2991, 3237, 3310
BmrI ACTGGG 2 cut(s) 1419, 3556
BmtI GCTAGC 1 cut(s) 794
BmuI ACTGGG 2 cut(s) 1419, 3556
BplI GAGNNNNNCTC 4 cut(s) 748, 780, 3373, 3405
BpmI CTGGAG 5 cut(s) 703, 838, 980, 2582, 2633
Bpu10I CCTNAGC 2 cut(s) 1826, 1995
Bpu1102I GCTNAGC 1 cut(s) 1689
BpuEI CTTGAG 2 cut(s) 3170, 3339
BpuMI CCSGG 1 cut(s) 2195
Bsa29I ATCGAT 1 cut(s) 46
BsaAI YACGTR 2 cut(s) 2244, 2881
BsaBI GATNNNNATC 1 cut(s) 2985
BsaHI GRCGYC 1 cut(s) 1174
BsaI GGTCTC 1 cut(s) 45
BsaJI CCNNGG 8 cut(s) 805, 1380, 1632, 2518, 3042, 3272, 3309, 3402
BsaWI WCCGGW 3 cut(s) 3500, 3511, 3524
BsaXI ACNNNNNCTCC 4 cut(s) 953, 983, 3165, 3195
Bsc4I CCNNNNNNNGG 5 cut(s) 708, 2611, 3144, 3335, 3518
Bse118I RCCGGY 3 cut(s) 1614, 3500, 3511
Bse1I ACTGG 5 cut(s) 821, 1233, 1425, 2697, 3551
Bse3DI GCAATG 2 cut(s) 1561, 1870
Bse8I GATNNNNATC 1 cut(s) 2985
BseBI CCWGG 7 cut(s) 828, 1035, 1395, 1633, 2991, 3237, 3310
BseCI ATCGAT 1 cut(s) 46
BseDI CCNNGG 8 cut(s) 805, 1380, 1632, 2518, 3042, 3272, 3309, 3402
BseJI GATNNNNATC 1 cut(s) 2985
BseLI CCNNNNNNNGG 5 cut(s) 708, 2611, 3144, 3335, 3518
BseMI GCAATG 2 cut(s) 1561, 1870
BseNI ACTGG 5 cut(s) 821, 1233, 1425, 2697, 3551
BseRI GAGGAG 4 cut(s) 599, 1929, 3157, 3292
BseSI GKGCMC 1 cut(s) 2755
BseXI GCAGC 8 cut(s) 205, 1156, 1730, 1849, 2306, 2696, 3115, 3252
BseYI CCCAGC 1 cut(s) 2399
BsgI GTGCAG 1 cut(s) 2313
Bsh1236I CGCG 2 cut(s) 550, 1459
BshFI GGCC 6 cut(s) 553, 1206, 2007, 2441, 2950, 3440
BshTI ACCGGT 2 cut(s) 3500, 3511
BshVI ATCGAT 1 cut(s) 46
BsiHKAI GWGCWC 3 cut(s) 772, 2266, 3156
BsiHKCI CYCGRG 5 cut(s) 91, 765, 1886, 2519, 3123
BsiSI CCGG 5 cut(s) 1615, 2195, 3501, 3512, 3525
BslFI GGGAC 4 cut(s) 1421, 1802, 1969, 2372
BslI CCNNNNNNNGG 5 cut(s) 708, 2611, 3144, 3335, 3518
BsmAI GTCTC 6 cut(s) 45, 977, 1259, 1714, 1889, 2790
BsmBI CGTCTC 1 cut(s) 977
BsmFI GGGAC 4 cut(s) 1421, 1802, 1969, 2372
BsmI GAATGC 3 cut(s) 1649, 1840, 3100
BsnI GGCC 6 cut(s) 553, 1206, 2007, 2441, 2950, 3440
Bso31I GGTCTC 1 cut(s) 45
BsoBI CYCGRG 5 cut(s) 91, 765, 1886, 2519, 3123
Bsp1286I GDGCHC 6 cut(s) 766, 772, 2266, 2755, 3156, 3432
Bsp1407I TGTACA 1 cut(s) 841
Bsp1720I GCTNAGC 1 cut(s) 1689
Bsp19I CCATGG 1 cut(s) 3272
BspANI GGCC 6 cut(s) 553, 1206, 2007, 2441, 2950, 3440
BspDI ATCGAT 1 cut(s) 46
BspFNI CGCG 2 cut(s) 550, 1459
BspMI ACCTGC 3 cut(s) 985, 1562, 2219
BspOI GCTAGC 1 cut(s) 794
BspPI GGATC 9 cut(s) 893, 1005, 1208, 2672, 2918, 2981, 2994, 3021, 3346
BspQI GCTCTTC 1 cut(s) 2697
BspTI CTTAAG 1 cut(s) 2756
BspTNI GGTCTC 1 cut(s) 45
BsrBI CCGCTC 3 cut(s) 1120, 2502, 3192
BsrDI GCAATG 2 cut(s) 1561, 1870
BsrFI RCCGGY 3 cut(s) 1614, 3500, 3511
BsrGI TGTACA 1 cut(s) 841
BsrI ACTGG 5 cut(s) 821, 1233, 1425, 2697, 3551
BssAI RCCGGY 3 cut(s) 1614, 3500, 3511
BssECI CCNNGG 8 cut(s) 805, 1380, 1632, 2518, 3042, 3272, 3309, 3402
BssNI GRCGYC 1 cut(s) 1174
BssT1I CCWWGG 3 cut(s) 805, 3042, 3272
Bst2UI CCWGG 7 cut(s) 828, 1035, 1395, 1633, 2991, 3237, 3310
Bst6I CTCTTC 4 cut(s) 889, 987, 2697, 3471
BstACI GRCGYC 1 cut(s) 1174
BstAFI CTTAAG 1 cut(s) 2756
BstAUI TGTACA 1 cut(s) 841
BstBAI YACGTR 2 cut(s) 2244, 2881
BstC8I GCNNGC 8 cut(s) 792, 1172, 1583, 1736, 2168, 2172, 3197, 3442
BstDSI CCRYGG 1 cut(s) 3272
BstFNI CGCG 2 cut(s) 550, 1459
BstH2I RGCGCY 2 cut(s) 2710, 3042
BstHHI GCGC 7 cut(s) 289, 361, 1688, 2317, 2709, 3041, 3367
BstMAI GTCTC 6 cut(s) 45, 977, 1259, 1714, 1889, 2790
BstMWI GCNNNNNNNGC 7 cut(s) 164, 193, 1740, 2530, 3079, 3128, 3134
BstNI CCWGG 7 cut(s) 828, 1035, 1395, 1633, 2991, 3237, 3310
BstNSI RCATGY 7 cut(s) 1197, 1245, 1443, 1799, 1914, 2170, 2174
BstSCI CCNGG 8 cut(s) 826, 1033, 1393, 1631, 2193, 2989, 3235, 3308
BstSFI CTRYAG 1 cut(s) 3345
BstSLI GKGCMC 1 cut(s) 2755
BstUI CGCG 2 cut(s) 550, 1459
BstV1I GCAGC 8 cut(s) 205, 1156, 1730, 1849, 2306, 2696, 3115, 3252
BstX2I RGATCY 5 cut(s) 898, 997, 1124, 2986, 3013
BstXI CCANNNNNNTGG 1 cut(s) 1639
BstYI RGATCY 5 cut(s) 898, 997, 1124, 2986, 3013
Bsu15I ATCGAT 1 cut(s) 46
BsuI GTATCC 1 cut(s) 2522
BsuRI GGCC 6 cut(s) 553, 1206, 2007, 2441, 2950, 3440
BsuTUI ATCGAT 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 3272
BtgZI GCGATG 1 cut(s) 45
BtsI GCAGTG 2 cut(s) 1031, 3132
BtsIMutI CAGTG 6 cut(s) 397, 1031, 1870, 1899, 2877, 3132
BveI ACCTGC 3 cut(s) 985, 1562, 2219
Cac8I GCNNGC 8 cut(s) 792, 1172, 1583, 1736, 2168, 2172, 3197, 3442
CaiI CAGNNNCTG 1 cut(s) 1228
CfoI GCGC 7 cut(s) 289, 361, 1688, 2317, 2709, 3041, 3367
Cfr10I RCCGGY 3 cut(s) 1614, 3500, 3511
ClaI ATCGAT 1 cut(s) 46
CseI GACGC 2 cut(s) 556, 1163
Csp6I GTAC 6 cut(s) 842, 1226, 2133, 2690, 2723, 3047
CspAI ACCGGT 2 cut(s) 3500, 3511
CspCI CAANNNNNGTGG 2 cut(s) 2125, 2160
CviQI GTAC 6 cut(s) 842, 1226, 2133, 2690, 2723, 3047
DrdI GACNNNNNNGTC 1 cut(s) 1796
DseDI GACNNNNNNGTC 1 cut(s) 1796
EaeI YGGCCR 1 cut(s) 2005
Eam1104I CTCTTC 4 cut(s) 889, 987, 2697, 3471
EarI CTCTTC 4 cut(s) 889, 987, 2697, 3471
Eco130I CCWWGG 3 cut(s) 805, 3042, 3272
Eco24I GRGCYC 2 cut(s) 766, 3432
Eco31I GGTCTC 1 cut(s) 45
Eco47III AGCGCT 1 cut(s) 2708
Eco57I CTGAAG 5 cut(s) 762, 1011, 2244, 2468, 3339
Eco88I CYCGRG 5 cut(s) 91, 765, 1886, 2519, 3123
EcoO109I RGGNCCY 1 cut(s) 1789
EcoRI GAATTC 1 cut(s) 2635
EcoRII CCWGG 7 cut(s) 826, 1033, 1393, 1631, 2989, 3235, 3308
EcoT14I CCWWGG 3 cut(s) 805, 3042, 3272
EcoT22I ATGCAT 2 cut(s) 2172, 2590
EcoT38I GRGCYC 2 cut(s) 766, 3432
ErhI CCWWGG 3 cut(s) 805, 3042, 3272
Esp3I CGTCTC 1 cut(s) 977
FalI AAGNNNNNCTT 2 cut(s) 984, 1016
FaqI GGGAC 4 cut(s) 1421, 1802, 1969, 2372
FauI CCCGC 6 cut(s) 929, 1163, 1397, 1590, 2565, 3188
FblI GTMKAC 1 cut(s) 2248
FriOI GRGCYC 2 cut(s) 766, 3432
FspBI CTAG 7 cut(s) 75, 543, 791, 1107, 1968, 2268, 2922
GlaI GCGC 7 cut(s) 288, 360, 1687, 2316, 2708, 3040, 3366
GsaI CCCAGC 1 cut(s) 2403
GsuI CTGGAG 5 cut(s) 703, 838, 980, 2582, 2633
HaeII RGCGCY 2 cut(s) 2710, 3042
HaeIII GGCC 6 cut(s) 553, 1206, 2007, 2441, 2950, 3440
HapII CCGG 5 cut(s) 1615, 2195, 3501, 3512, 3525
HgaI GACGC 2 cut(s) 556, 1163
HhaI GCGC 7 cut(s) 289, 361, 1688, 2317, 2709, 3041, 3367
Hin1I GRCGYC 1 cut(s) 1174
Hin6I GCGC 7 cut(s) 287, 359, 1686, 2315, 2707, 3039, 3365
HinP1I GCGC 7 cut(s) 287, 359, 1686, 2315, 2707, 3039, 3365
HincII GTYRAC 6 cut(s) 600, 849, 1603, 1626, 3259, 3409
HindII GTYRAC 6 cut(s) 600, 849, 1603, 1626, 3259, 3409
HindIII AAGCTT 5 cut(s) 644, 1157, 1526, 2468, 2531
HpaI GTTAAC 2 cut(s) 1603, 3409
HpaII CCGG 5 cut(s) 1615, 2195, 3501, 3512, 3525
HphI GGTGA 6 cut(s) 821, 1292, 1586, 2183, 3074, 3539
HpyAV CCTTC 9 cut(s) 486, 574, 1288, 1512, 2319, 2779, 3430, 3512, 3547
HpyCH4IV ACGT 4 cut(s) 65, 1702, 2243, 2880
HpyF10VI GCNNNNNNNGC 7 cut(s) 164, 193, 1740, 2530, 3079, 3128, 3134
HpySE526I ACGT 4 cut(s) 65, 1702, 2243, 2880
Hsp92I GRCGYC 1 cut(s) 1174
HspAI GCGC 7 cut(s) 287, 359, 1686, 2315, 2707, 3039, 3365
KflI GGGWCCC 1 cut(s) 1789
KspAI GTTAAC 2 cut(s) 1603, 3409
LguI GCTCTTC 1 cut(s) 2697
Lsp1109I GCAGC 8 cut(s) 205, 1156, 1730, 1849, 2306, 2696, 3115, 3252
MaeI CTAG 7 cut(s) 75, 543, 791, 1107, 1968, 2268, 2922
MaeII ACGT 4 cut(s) 65, 1702, 2243, 2880
MbiI CCGCTC 3 cut(s) 1120, 2502, 3192
MfeI CAATTG 2 cut(s) 3393, 3462
MflI RGATCY 5 cut(s) 898, 997, 1124, 2986, 3013
MhlI GDGCHC 6 cut(s) 766, 772, 2266, 2755, 3156, 3432
MlsI TGGCCA 1 cut(s) 2007
MluCI AATT 9 cut(s) 139, 1301, 1497, 2339, 2352, 2635, 3230, 3393, 3462
MluI ACGCGT 1 cut(s) 1457
MluNI TGGCCA 1 cut(s) 2007
MlyI GAGTC 1 cut(s) 3299
MmeI TCCRAC 1 cut(s) 3395
Mox20I TGGCCA 1 cut(s) 2007
Mph1103I ATGCAT 2 cut(s) 2172, 2590
MroXI GAANNNNTTC 2 cut(s) 1927, 2533
MscI TGGCCA 1 cut(s) 2007
MseI TTAA 6 cut(s) 1338, 1434, 1602, 2757, 3213, 3408
Msp20I TGGCCA 1 cut(s) 2007
MspA1I CMGCKG 2 cut(s) 723, 958
MspCI CTTAAG 1 cut(s) 2756
MspI CCGG 5 cut(s) 1615, 2195, 3501, 3512, 3525
MspR9I CCNGG 8 cut(s) 828, 1035, 1395, 1633, 2195, 2991, 3237, 3310
MunI CAATTG 2 cut(s) 3393, 3462
Mva1269I GAATGC 3 cut(s) 1649, 1840, 3100
MvaI CCWGG 7 cut(s) 828, 1035, 1395, 1633, 2991, 3237, 3310
MvnI CGCG 2 cut(s) 550, 1459
MwoI GCNNNNNNNGC 7 cut(s) 164, 193, 1740, 2530, 3079, 3128, 3134
NciI CCSGG 1 cut(s) 2195
NcoI CCATGG 1 cut(s) 3272
NheI GCTAGC 1 cut(s) 790
NmeAIII GCCGAG 1 cut(s) 3224
NmuCI GTSAC 5 cut(s) 1412, 1859, 2189, 2204, 2347
NsiI ATGCAT 2 cut(s) 2172, 2590
NspI RCATGY 7 cut(s) 1197, 1245, 1443, 1799, 1914, 2170, 2174
OliI CACNNNNGTG 1 cut(s) 2289
PaeI GCATGC 2 cut(s) 2170, 2174
PaeR7I CTCGAG 3 cut(s) 91, 765, 1886
PaqCI CACCTGC 2 cut(s) 985, 1562
PciI ACATGT 4 cut(s) 1193, 1241, 1795, 1910
PciSI GCTCTTC 1 cut(s) 2697
PctI GAATGC 3 cut(s) 1649, 1840, 3100
PdmI GAANNNNTTC 2 cut(s) 1927, 2533
PflMI CCANNNNNTGG 1 cut(s) 708
PfoI TCCNGGA 2 cut(s) 1393, 2989
PinAI ACCGGT 2 cut(s) 3500, 3511
PleI GAGTC 1 cut(s) 3299
PpsI GAGTC 1 cut(s) 3299
Ppu21I YACGTR 2 cut(s) 2244, 2881
PpuMI RGGWCCY 1 cut(s) 1789
PscI ACATGT 4 cut(s) 1193, 1241, 1795, 1910
Psp5II RGGWCCY 1 cut(s) 1789
Psp6I CCWGG 7 cut(s) 826, 1033, 1393, 1631, 2989, 3235, 3308
PspFI CCCAGC 1 cut(s) 2399
PspGI CCWGG 7 cut(s) 826, 1033, 1393, 1631, 2989, 3235, 3308
PspPPI RGGWCCY 1 cut(s) 1789
PspXI VCTCGAGB 2 cut(s) 91, 765
PstNI CAGNNNCTG 1 cut(s) 1228
PsuI RGATCY 5 cut(s) 898, 997, 1124, 2986, 3013
PvuII CAGCTG 1 cut(s) 723
RsaI GTAC 6 cut(s) 843, 1227, 2134, 2691, 2724, 3048
RsaNI GTAC 6 cut(s) 842, 1226, 2133, 2690, 2723, 3047
SapI GCTCTTC 1 cut(s) 2697
SaqAI TTAA 6 cut(s) 1338, 1434, 1602, 2757, 3213, 3408
SchI GAGTC 1 cut(s) 3299
ScrFI CCNGG 8 cut(s) 828, 1035, 1395, 1633, 2195, 2991, 3237, 3310
SduI GDGCHC 6 cut(s) 766, 772, 2266, 2755, 3156, 3432
SfcI CTRYAG 1 cut(s) 3345
Sfr274I CTCGAG 3 cut(s) 91, 765, 1886
SlaI CTCGAG 3 cut(s) 91, 765, 1886
SmlI CTYRAG 6 cut(s) 91, 765, 1886, 2756, 3149, 3354
SmoI CTYRAG 6 cut(s) 91, 765, 1886, 2756, 3149, 3354
SphI GCATGC 2 cut(s) 2170, 2174
Sse9I AATT 9 cut(s) 139, 1301, 1497, 2339, 2352, 2635, 3230, 3393, 3462
SspMI CTAG 7 cut(s) 75, 543, 791, 1107, 1968, 2268, 2922
StyD4I CCNGG 8 cut(s) 826, 1033, 1393, 1631, 2193, 2989, 3235, 3308
StyI CCWWGG 3 cut(s) 805, 3042, 3272
TaiI ACGT 4 cut(s) 68, 1705, 2246, 2883
TasI AATT 9 cut(s) 139, 1301, 1497, 2339, 2352, 2635, 3230, 3393, 3462
TatI WGTACW 1 cut(s) 841
TauI GCSGC 3 cut(s) 553, 2441, 3195
Tru1I TTAA 6 cut(s) 1338, 1434, 1602, 2757, 3213, 3408
Tru9I TTAA 6 cut(s) 1338, 1434, 1602, 2757, 3213, 3408
TscAI CASTG 6 cut(s) 397, 1031, 1870, 1906, 2877, 3139
TseFI GTSAC 5 cut(s) 1412, 1859, 2189, 2204, 2347
TseI GCWGC 8 cut(s) 193, 1144, 1743, 1837, 2294, 2709, 3128, 3240
Tsp45I GTSAC 5 cut(s) 1412, 1859, 2189, 2204, 2347
TspDTI ATGAA 5 cut(s) 1301, 1317, 2232, 2352, 2463
TspGWI ACGGA 1 cut(s) 204
TspRI CASTG 6 cut(s) 397, 1031, 1870, 1906, 2877, 3139
Van91I CCANNNNNTGG 1 cut(s) 708
Vha464I CTTAAG 1 cut(s) 2756
XapI RAATTY 3 cut(s) 139, 2339, 2635
XceI RCATGY 7 cut(s) 1197, 1245, 1443, 1799, 1914, 2170, 2174
XhoI CTCGAG 3 cut(s) 91, 765, 1886
XmiI GTMKAC 1 cut(s) 2248
XmnI GAANNNNTTC 2 cut(s) 1927, 2533
XspI CTAG 7 cut(s) 75, 543, 791, 1107, 1968, 2268, 2922
Zsp2I ATGCAT 2 cut(s) 2172, 2590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.