Rh7BG011200

NF-X1-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0011120
Physical Location & Seq
Reverse (-)
726321 .. 729989
3669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG011200.1

Sequence Viewer

Length: 3669 bp
ATGGCTTCTCAGGTTCGAAGTGAGCGTAGGGAGAATAATAATAGGTCCAGGAATCCTGCTCAGCCTCGCTGGGTGCCCAGAGGATCCAACCCTACCGCCGCCGCTGCCGTGAACCCGCCGAGCTTTGGTTCGAACCTACCCGATGGGAATGCAGGGATGCCCAACTACAGCTCTGAAGCAGGAGAGGGCCGGCAGCATAGAGGAGGAGGACATGGTGGAAATGGAAATGGAGGGCAGCAGAGCCACATTTCGGCACCAGCAGAGAGTCGGCAGCATAGAGGAGGATATAGTGGAAATGGTGGGCAGCTCAATTATGTGTTGGCGGCACCGTCAGAGAGTCGGCAGCAGCATAGAGGGGGACATAATGGAAATGGAGGCCAGTCCAACTACAGCTTCACAGCATCGGATGGTCGGCAGCAGCAGAGAGGAGGACATAATGGAAGTGTGGGGCAGTTCAGTCACAGCTCTGCGACCTCAGAGAGTCGGCTGCATAGAGGAGGACACAATGGGAATGGAGGGCAGTCCAATCACAGCTTTACATTATCGGAGAATCGGCAGCACAGAGGAGGACATAATGGTTCCAGGGGTAATGTGGTTCGGCCAATGAATCATAGAAGGGAGAGGGAAAGGAGTGAGAGTCAGGAGGGGATGGGCATGAAGGACTCTAGTTTGCCGCAGCTTGTGCAAGAAATTCAGGATAAACTGACTAAGGGCACTGTTGAGTGCATGATTTGTTATGATATGGTGAGGAGGTCTGCACCTGTATGGTCCTGCTCAAGCTGTTTCTCGATTTTCCATCTGAATTGCATCAAGAAATGGGCTCGAGCTCCCACTTCTATTGATATGTCTGCAGGGAAGAATCAGGGATTTAATTGGCGGTGTCCAGGATGTCAGTCTGTACAGCTCACATCGTCAAAGGAGATTCGCTACATGTGTTTTTGTGGTAAGCGGACAGACCCACCTTCGGATTTGTATTTGACACCACATTCATGTGGAGAACATTGTGGGAAGCCACTCGAGAAGGAGGTCCCAGGAAATGGAATGAGTAAGGATGATCTTTGCCCTCATATGTGTGTCTTGCAGTGCCACCCAGGTCCATGCCCTCCTTGTAAAGCATTCGCACCGCCACGGTTATGCCCTTGTGGAAAGAAAACAATAACTACAAGATGCTCAGATCGGACTTCTGTTCTGACTTGTGGCAATCTTTGTAGCAAGCTTCTTGATTGTGGGCGTCACCGCTGTGAGCGGAAGTGCCATGTGGGTCCTTGTGATCCTTGTCAGGTTCCATTCAATGCTTCTTGCTTCTGCCTGAAAAAGCTGGAGGTCGTTCTTTGTGGAGAGATGATAGTAAAGGGAGAGGTGAAAGCAGAAGATGGGGTTTTCTCTTGCAGTTCTAGTTGTGGAAAGAAGCTTAGCTGTGGCAATCATGTTTGCAGTGAAATTTGTCATCCAGGCCCTTGTGGAGAGTGCATTTTAATGCCACGGAATATCAAGACATGCCACTGTGGGAAAACAAGCTTGCAGGAGGAACGCCAGAGTTGTTTGGATCCGATTCCGACTTGTTCACAAATATGTGACAAGACTCTCCCTTGTGGGGTGCACCAGTGTCAACAGGTGTGCCATACTGGTGATTGCCCCCCTTGTTTGGTTAAAGTAACCCAAAAATGTCGCTGTGAATCAACTTCTCGGAATGTGGAGTGCTGTAAAACAACAATGGAGAATGAGAAATTTACTTGTGATAAGCCTTGTGGATGGAAGAAGAATTGTGGAAGGCACCGCTGCAGTGAAAGGTGCTGTCCTCTTTCTAATTCAAATAATCATCTTTCAGGGGATTGGGATCCTCACTTGTGCTCCATGCCCTGTGGGAAGAAATTAAGGTGCGGGCAGCATTCTTGTGAATCGCTGTGTCACAGTGGCCACTGTCCTCCCTGCCTTGATACAATCTTTACTGACTTGACATGTGCATGTGGGAGAACTTCAATCCCTCCTCCATTGCCCTGTGGTACACCTCCTCCATCATGTCAGCTCCCTTGTTCGGTGCCTCAGCCTTGTGGACATTCATCTTCTCACAGCTGCCACTTTGGAGACTGCCCGCCTTGTTCAGTGCCTGTAGCAAAGGAGTGCATCGGTGGACATGTGGTCCTCAGGAACATTCCTTGTGGGTCGAGGGACATTAAATGTAACAAGCTCTGTGGGAAGATGAGGCAATGCGGTATGCATGCTTGCGGCAGAACATGTCACCCACCGCCTTGTGAGTGTTCCTCGTCAGCAGAAGCCGGCTCAAAATCTTCTTGTGGACAGAAATGTGGAGCTCCTAGGAGAGATTGCAGGCATACATGTACTGCACCTTGTCACCCTTATGCTTCCTGTCCAGATGCGAGATGTGATTTCCTTGTCACAATTACTTGTTCTTGTGGCCGGATAACAGCAAATGTTCCTTGCGATTCTGGTGGCAGCTCTGCTAGTTTTAATGCTGATACTGTGTTTGAAGCTTCCATTATCCAAAAGTTGCCAGTACCGCTTCAACCAGTTGAAGCCACCAACAAGAAGATCCCACTTGGACAGAGGAAGCTCATGTGTGATGATGAATGTGCTAAGTTGGAGCGGAAACGTGTTCTTGCAGATGCTTTTGATATAGTTCCTCCAAATTTGGATGCACTCCATTTTGGTGAGACTACTGTTATTTCTGAGTTGCTGTCGGACCTTTTCAGGCGTGATCCAAAATGGGTATTATCGGTGGAGGAGAGATGCAAACAATTGGTTCTTGGGAAGAGCAAAGGTGCTACAAGTGGCCTCCGGGTCCATGTTTTTTGTCCAATGCTGAAGGAAAAGAGAGATGTGGTTAGGGTGATTGCTGACAGGTGGAAGCTTGCAGTTCAAGCTGCTGGCTGGGAGCCCAAGCGTTTTATTGTGGTACATGCTACACCTAAATCCAAAGTCCCAGCCAGGGTGCTTGGGGTTAAGGGTACCACCACAGTGAACGCATCCCAGCCTCCAGCTTTTGATCATTTAGTAGACATGGATCCCAGGCTTGTAGTTTCTTTTCCAGATCTTCCTAGAGATGCAGATATAAGTGCATTGGTCTTGAGGTTTGGTGGTGAATGTGAGCTAGTCTGGTTGAATGACAAGAACGCGTTGGCTGTATTCAATGATCCTGCTCGAGCTGCAACTGCAATGAGGAGGTTGGATAATGGTACACTCTATCATGGGGCTATTGCTGTTCTGTCTGCAGCTTCAGCTGGTTCTAATGCTTGGGGTGGAGGGGGAATAGCCAAGGAAGGAGCCTATACAGCACTGAAGGGTAATGCGTGGAAGAAGGCTGTTATTCGGGAGTCTTCTTGGAGAGAAGATTCATGGGGTGAGGAAGAGTGGTCTGGTGGTTCTGCAGATGTGCAGGCATCCGTGTGGAAAAAAGAAGCTCCAATTGCTGCCTCATTAAACCGCTGGAGTGTACTAGATAGTGAAGTGGCTTTGGGATCATCTTCTGTATCCCCCACAGTAGAGGACTCTGGAAAACAGACTGCTGCTCGTTTAATTTCCATGGTGGAATCAAATGCAAGTGGTTCAACTTCATCAAATGCAAGCGGTTCGACTTCAGCGGGGCAGCTTGGAGGGACTATTACAGAAACATCTGAAGTGGTAGATGACTGGGAGAAGGCTTATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009696 GO:0009697 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010188 GO:0010310 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010817 GO:0016053 GO:0016070 GO:0016999 GO:0017000 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032774 GO:0032787 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046189 GO:0046394 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0098542 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05165 map05165
Pfam Domains
Protein Families
K_trans R3H zf-NF-X1

Protein Analysis

1222

Amino Acids

131.59

Weight (kDa)

8.54

Isoelectric Point (pI)

52.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-NF-X1 PF01422 409 - 427 6.6e-06 NF-X1 type zinc finger
zf-NF-X1 PF01422 531 - 548 3e-06 NF-X1 type zinc finger
RRM_NFXL1 PF24435 997 - 1074 1.4e-42 NFXL1 RRM-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011120)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10170 AT1G10170 AT1G10170 AT1G10170
fragaria_vesca FvH4_5g17660
malus_domestica MD06G1232100.v1.1 MD14G1238900.v1.1
prunus_persica Prupe.5G236400_v2.0.a1
pyrus_communis pycom06g20620 pycom14g19990
rosa_chinensis RchiOBHm_Chr7g0178011
rosa_laevigata RLG00000005482
rosa_multiflora Rmu_sc0013399.1_g000001
rosa_roxburghii Rroxscaffold_3G00275290
rosa_rugosa Rorug06G0412300
rosa_samantha Rh7AG011800 Rh7BG011200 Rh7CG011800 Rh7DG011800
rosa_wichuraiana Rw7G000930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 2966
AccB1I GGYRCC 6 cut(s) 73, 253, 325, 1773, 2038, 2966
AccB7I CCANNNNNTGG 1 cut(s) 1037
AccBSI CCGCTC 2 cut(s) 1246, 2605
AccI GTMKAC 1 cut(s) 3015
AccII CGCG 1 cut(s) 3134
AcoI YGGCCR 3 cut(s) 599, 1915, 2416
AcsI RAATTY 4 cut(s) 690, 1440, 1727, 2647
AcuI CTGAAG 6 cut(s) 195, 2843, 3219, 3317, 3579, 3654
AcyI GRCGYC 1 cut(s) 1231
AfaI GTAC 8 cut(s) 900, 2005, 2341, 2517, 2916, 2968, 3196, 3453
AfiI CCNNNNNNNGG 8 cut(s) 125, 250, 964, 1037, 1594, 1645, 2035, 2947
AflIII ACRYGT 7 cut(s) 930, 1958, 2134, 2234, 2336, 2611, 3132
AhdI GACNNNNNGTC 1 cut(s) 2138
AjnI CCWGG 8 cut(s) 47, 581, 883, 1030, 1090, 1450, 2945, 3026
AjuI GAANNNNNNNTTGG 2 cut(s) 377, 409
AleI CACNNNNGTG 2 cut(s) 1239, 2975
Alw21I GWGCWC 4 cut(s) 829, 1602, 1853, 2314
Alw26I GTCTC 2 cut(s) 2079, 2666
Alw44I GTGCAC 1 cut(s) 1598
AlwNI CAGNNNCTG 1 cut(s) 2108
Ama87I CYCGRG 3 cut(s) 822, 1016, 3159
AoxI GGCC 7 cut(s) 187, 376, 599, 1453, 1915, 2416, 2791
ApaLI GTGCAC 1 cut(s) 1598
ApoI RAATTY 4 cut(s) 690, 1440, 1727, 2647
Asp718I GGTACC 1 cut(s) 2966
AspA2I CCTAGG 1 cut(s) 2315
AsuC2I CCSGG 1 cut(s) 2798
AsuII TTCGAA 2 cut(s) 16, 131
AvaI CYCGRG 3 cut(s) 822, 1016, 3159
AvaII GGWCC 8 cut(s) 45, 768, 1027, 1094, 1262, 2140, 2701, 2800
AvrII CCTAGG 1 cut(s) 2315
AxyI CCTNAGG 1 cut(s) 2144
BaeGI GKGCMC 3 cut(s) 78, 716, 1602
BalI TGGCCA 1 cut(s) 1917
BamHI GGATCC 4 cut(s) 83, 1546, 1837, 3022
BanI GGYRCC 6 cut(s) 73, 253, 325, 1773, 2038, 2966
BanII GRGCYC 4 cut(s) 823, 829, 2314, 2898
BbsI GAAGAC 1 cut(s) 3327
Bbv12I GWGCWC 4 cut(s) 829, 1602, 1853, 2314
BbvCI CCTCAGC 1 cut(s) 2043
BccI CCATC 7 cut(s) 137, 401, 643, 804, 1367, 1746, 2023
BceAI ACGGC 1 cut(s) 92
BcgI CGANNNNNNTGC 4 cut(s) 131, 165, 3570, 3604
BciT130I CCWGG 8 cut(s) 49, 583, 885, 1032, 1092, 1452, 2947, 3028
BciVI GTATCC 1 cut(s) 3499
BclI TGATCA 1 cut(s) 3004
BcnI CCSGG 1 cut(s) 2798
BcoDI GTCTC 2 cut(s) 2079, 2666
BfaI CTAG 7 cut(s) 666, 1395, 2316, 2463, 3057, 3110, 3455
BfmI CTRYAG 7 cut(s) 166, 388, 849, 1780, 2109, 3228, 3384
BfuI GTATCC 1 cut(s) 3499
BglII AGATCT 1 cut(s) 3049
BlnI CCTAGG 1 cut(s) 2315
BlpI GCTNAGC 2 cut(s) 60, 1412
Bme1390I CCNGG 9 cut(s) 49, 583, 885, 1032, 1092, 1452, 2798, 2947, 3028
Bme18I GGWCC 8 cut(s) 45, 768, 1027, 1094, 1262, 2140, 2701, 2800
BmeRI GACNNNNNGTC 1 cut(s) 2138
BmeT110I CYCGRG 3 cut(s) 822, 1016, 3159
BmrFI CCNGG 9 cut(s) 49, 583, 885, 1032, 1092, 1452, 2798, 2947, 3028
BmrI ACTGGG 1 cut(s) 3658
BmuI ACTGGG 1 cut(s) 3658
BpiI GAAGAC 1 cut(s) 3327
BplI GAGNNNNNCTC 2 cut(s) 2246, 2278
BpmI CTGGAG 3 cut(s) 1340, 2979, 3466
Bpu10I CCTNAGC 1 cut(s) 2043
Bpu1102I GCTNAGC 2 cut(s) 60, 1412
Bpu14I TTCGAA 2 cut(s) 16, 131
BpuEI CTTGAG 2 cut(s) 760, 3106
BpuMI CCSGG 1 cut(s) 2798
BsaBI GATNNNNATC 1 cut(s) 1836
BsaHI GRCGYC 1 cut(s) 1231
BsaXI ACNNNNNCTCC 6 cut(s) 622, 652, 1835, 1865, 1996, 2026
Bsc4I CCNNNNNNNGG 8 cut(s) 125, 250, 964, 1037, 1594, 1645, 2035, 2947
Bse118I RCCGGY 2 cut(s) 189, 2276
Bse1I ACTGG 6 cut(s) 379, 1603, 1630, 2513, 2528, 3653
Bse21I CCTNAGG 1 cut(s) 2144
Bse3DI GCAATG 3 cut(s) 1991, 2213, 3180
Bse8I GATNNNNATC 1 cut(s) 1836
BseBI CCWGG 8 cut(s) 49, 583, 885, 1032, 1092, 1452, 2947, 3028
BseJI GATNNNNATC 1 cut(s) 1836
BseLI CCNNNNNNNGG 8 cut(s) 125, 250, 964, 1037, 1594, 1645, 2035, 2947
BseMI GCAATG 3 cut(s) 1991, 2213, 3180
BseMII CTCAG 7 cut(s) 23, 74, 489, 1185, 2057, 2158, 2679
BseNI ACTGG 6 cut(s) 379, 1603, 1630, 2513, 2528, 3653
BseSI GKGCMC 3 cut(s) 78, 716, 1602
BseYI CCCAGC 4 cut(s) 69, 2889, 2941, 2988
BsgI GTGCAG 3 cut(s) 741, 2328, 3413
Bsh1236I CGCG 1 cut(s) 3134
BshFI GGCC 7 cut(s) 189, 378, 601, 1455, 1917, 2418, 2793
BshNI GGYRCC 6 cut(s) 73, 253, 325, 1773, 2038, 2966
BsiHKAI GWGCWC 4 cut(s) 829, 1602, 1853, 2314
BsiHKCI CYCGRG 3 cut(s) 822, 1016, 3159
BsiSI CCGG 4 cut(s) 190, 2277, 2419, 2797
BslFI GGGAC 5 cut(s) 372, 1013, 2183, 2924, 3628
BslI CCNNNNNNNGG 8 cut(s) 125, 250, 964, 1037, 1594, 1645, 2035, 2947
BsmAI GTCTC 2 cut(s) 2079, 2666
BsmFI GGGAC 5 cut(s) 372, 1013, 2183, 2924, 3628
BsmI GAATGC 3 cut(s) 154, 1115, 1888
BsnI GGCC 7 cut(s) 189, 378, 601, 1455, 1917, 2418, 2793
BsoBI CYCGRG 3 cut(s) 822, 1016, 3159
Bsp119I TTCGAA 2 cut(s) 16, 131
Bsp1286I GDGCHC 8 cut(s) 78, 716, 823, 829, 1602, 1853, 2314, 2898
Bsp1407I TGTACA 1 cut(s) 898
Bsp1720I GCTNAGC 2 cut(s) 60, 1412
Bsp19I CCATGG 1 cut(s) 3540
BspANI GGCC 7 cut(s) 189, 378, 601, 1455, 1917, 2418, 2793
BspCNI CTCAG 7 cut(s) 22, 73, 488, 1184, 2056, 2157, 2680
BspFNI CGCG 1 cut(s) 3134
BspMAI CTGCAG 4 cut(s) 853, 1784, 3232, 3388
BspQI GCTCTTC 1 cut(s) 2765
BspT104I TTCGAA 2 cut(s) 16, 131
BspT107I GGYRCC 6 cut(s) 73, 253, 325, 1773, 2038, 2966
BsrBI CCGCTC 2 cut(s) 1246, 2605
BsrDI GCAATG 3 cut(s) 1991, 2213, 3180
BsrFI RCCGGY 2 cut(s) 189, 2276
BsrGI TGTACA 1 cut(s) 898
BsrI ACTGG 6 cut(s) 379, 1603, 1630, 2513, 2528, 3653
BssAI RCCGGY 2 cut(s) 189, 2276
BssNI GRCGYC 1 cut(s) 1231
BssT1I CCWWGG 3 cut(s) 2315, 3273, 3540
Bst2UI CCWGG 8 cut(s) 49, 583, 885, 1032, 1092, 1452, 2947, 3028
Bst6I CTCTTC 2 cut(s) 2765, 3360
BstACI GRCGYC 1 cut(s) 1231
BstAPI GCANNNNNTGC 1 cut(s) 682
BstAUI TGTACA 1 cut(s) 898
BstBI TTCGAA 2 cut(s) 16, 131
BstDSI CCRYGG 3 cut(s) 1127, 1481, 3540
BstFNI CGCG 1 cut(s) 3134
BstMAI GTCTC 2 cut(s) 2079, 2666
BstMWI GCNNNNNNNGC 9 cut(s) 104, 682, 2518, 2879, 3164, 3170, 3236, 3290, 3425
BstNI CCWGG 8 cut(s) 49, 583, 885, 1032, 1092, 1452, 2947, 3028
BstNSI RCATGY 9 cut(s) 934, 1500, 1962, 1968, 2138, 2222, 2238, 2340, 2921
BstSCI CCNGG 9 cut(s) 47, 581, 883, 1030, 1090, 1450, 2796, 2945, 3026
BstSFI CTRYAG 7 cut(s) 166, 388, 849, 1780, 2109, 3228, 3384
BstSLI GKGCMC 3 cut(s) 78, 716, 1602
BstUI CGCG 1 cut(s) 3134
BstV2I GAAGAC 1 cut(s) 3327
BstX2I RGATCY 6 cut(s) 83, 1546, 1837, 2550, 3022, 3049
BstYI RGATCY 6 cut(s) 83, 1546, 1837, 2550, 3022, 3049
Bsu36I CCTNAGG 1 cut(s) 2144
BsuI GTATCC 1 cut(s) 3499
BsuRI GGCC 7 cut(s) 189, 378, 601, 1455, 1917, 2418, 2793
BtgI CCRYGG 3 cut(s) 1127, 1481, 3540
BtsI GCAGTG 3 cut(s) 1088, 1441, 1789
CaiI CAGNNNCTG 1 cut(s) 2108
Cfr10I RCCGGY 2 cut(s) 189, 2276
CseI GACGC 1 cut(s) 1220
Csp6I GTAC 8 cut(s) 899, 2004, 2340, 2516, 2915, 2967, 3195, 3452
CspCI CAANNNNNGTGG 4 cut(s) 820, 855, 2173, 2208
CviQI GTAC 8 cut(s) 899, 2004, 2340, 2516, 2915, 2967, 3195, 3452
DriI GACNNNNNGTC 1 cut(s) 2138
EaeI YGGCCR 3 cut(s) 599, 1915, 2416
Eam1104I CTCTTC 2 cut(s) 2765, 3360
Eam1105I GACNNNNNGTC 1 cut(s) 2138
EarI CTCTTC 2 cut(s) 2765, 3360
Ecl136II GAGCTC 2 cut(s) 827, 2312
Eco130I CCWWGG 3 cut(s) 2315, 3273, 3540
Eco24I GRGCYC 4 cut(s) 823, 829, 2314, 2898
Eco47I GGWCC 8 cut(s) 45, 768, 1027, 1094, 1262, 2140, 2701, 2800
Eco53kI GAGCTC 2 cut(s) 827, 2312
Eco57I CTGAAG 6 cut(s) 195, 2843, 3219, 3317, 3579, 3654
Eco81I CCTNAGG 1 cut(s) 2144
Eco88I CYCGRG 3 cut(s) 822, 1016, 3159
EcoICRI GAGCTC 2 cut(s) 827, 2312
EcoO109I RGGNCCY 3 cut(s) 1027, 1262, 1454
EcoRII CCWGG 8 cut(s) 47, 581, 883, 1030, 1090, 1450, 2945, 3026
EcoT14I CCWWGG 3 cut(s) 2315, 3273, 3540
EcoT22I ATGCAT 1 cut(s) 2220
EcoT38I GRGCYC 4 cut(s) 823, 829, 2314, 2898
ErhI CCWWGG 3 cut(s) 2315, 3273, 3540
FaqI GGGAC 5 cut(s) 372, 1013, 2183, 2924, 3628
FauI CCCGC 4 cut(s) 123, 1874, 2100, 3592
FauNDI CATATG 1 cut(s) 1068
FbaI TGATCA 1 cut(s) 3004
FblI GTMKAC 1 cut(s) 3015
FriOI GRGCYC 4 cut(s) 823, 829, 2314, 2898
FspBI CTAG 7 cut(s) 666, 1395, 2316, 2463, 3057, 3110, 3455
GsaI CCCAGC 4 cut(s) 73, 2893, 2945, 2992
GsuI CTGGAG 3 cut(s) 1340, 2979, 3466
HaeIII GGCC 7 cut(s) 189, 378, 601, 1455, 1917, 2418, 2793
HapII CCGG 4 cut(s) 190, 2277, 2419, 2797
HgaI GACGC 1 cut(s) 1220
Hin1I GRCGYC 1 cut(s) 1231
HincII GTYRAC 1 cut(s) 1610
HindII GTYRAC 1 cut(s) 1610
HindIII AAGCTT 5 cut(s) 1214, 1409, 1516, 2490, 2867
HpaII CCGG 4 cut(s) 190, 2277, 2419, 2797
HpyCH4IV ACGT 1 cut(s) 2611
HpyF10VI GCNNNNNNNGC 9 cut(s) 104, 682, 2518, 2879, 3164, 3170, 3236, 3290, 3425
HpySE526I ACGT 1 cut(s) 2611
Hsp92I GRCGYC 1 cut(s) 1231
KpnI GGTACC 1 cut(s) 2970
KroI GCCGGC 2 cut(s) 189, 2276
KroNI GCCGGC 2 cut(s) 191, 2278
Ksp22I TGATCA 1 cut(s) 3004
LguI GCTCTTC 1 cut(s) 2765
LmnI GCTCC 9 cut(s) 832, 1856, 2031, 2309, 2317, 2602, 2893, 3281, 3424
MaeI CTAG 7 cut(s) 666, 1395, 2316, 2463, 3057, 3110, 3455
MaeII ACGT 1 cut(s) 2611
MaeIII GTNAC 9 cut(s) 458, 1232, 1574, 1654, 1907, 2180, 2237, 2351, 2395
MbiI CCGCTC 2 cut(s) 1246, 2605
MfeI CAATTG 2 cut(s) 2756, 3423
MflI RGATCY 6 cut(s) 83, 1546, 1837, 2550, 3022, 3049
MhlI GDGCHC 8 cut(s) 78, 716, 823, 829, 1602, 1853, 2314, 2898
MlsI TGGCCA 1 cut(s) 1917
MluI ACGCGT 1 cut(s) 3132
MluNI TGGCCA 1 cut(s) 1917
MlyI GAGTC 8 cut(s) 274, 346, 490, 646, 656, 1576, 3341, 3500
MmeI TCCRAC 6 cut(s) 111, 408, 1580, 2580, 2679, 3165
Mox20I TGGCCA 1 cut(s) 1917
Mph1103I ATGCAT 1 cut(s) 2220
MroNI GCCGGC 2 cut(s) 189, 2276
MscI TGGCCA 1 cut(s) 1917
MseI TTAA 9 cut(s) 870, 1475, 1650, 1874, 2175, 2469, 2961, 3437, 3533
Msp20I TGGCCA 1 cut(s) 1917
MspA1I CMGCKG 7 cut(s) 104, 1239, 1779, 2073, 3239, 3444, 3599
MspI CCGG 4 cut(s) 190, 2277, 2419, 2797
MspR9I CCNGG 9 cut(s) 49, 583, 885, 1032, 1092, 1452, 2798, 2947, 3028
MunI CAATTG 2 cut(s) 2756, 3423
Mva1269I GAATGC 3 cut(s) 154, 1115, 1888
MvaI CCWGG 8 cut(s) 49, 583, 885, 1032, 1092, 1452, 2947, 3028
MvnI CGCG 1 cut(s) 3134
MwoI GCNNNNNNNGC 9 cut(s) 104, 682, 2518, 2879, 3164, 3170, 3236, 3290, 3425
NaeI GCCGGC 2 cut(s) 191, 2278
NciI CCSGG 1 cut(s) 2798
NcoI CCATGG 1 cut(s) 3540
NdeI CATATG 1 cut(s) 1068
NgoMIV GCCGGC 2 cut(s) 189, 2276
NmeAIII GCCGAG 1 cut(s) 144
NmuCI GTSAC 7 cut(s) 458, 1232, 1574, 1907, 2237, 2351, 2395
NsiI ATGCAT 1 cut(s) 2220
NspI RCATGY 9 cut(s) 934, 1500, 1962, 1968, 2138, 2222, 2238, 2340, 2921
NspV TTCGAA 2 cut(s) 16, 131
OliI CACNNNNGTG 2 cut(s) 1239, 2975
PaeI GCATGC 1 cut(s) 2222
PaeR7I CTCGAG 3 cut(s) 822, 1016, 3159
PciI ACATGT 5 cut(s) 930, 1958, 2134, 2234, 2336
PciSI GCTCTTC 1 cut(s) 2765
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PctI GAATGC 3 cut(s) 154, 1115, 1888
PdiI GCCGGC 2 cut(s) 191, 2278
PflMI CCANNNNNTGG 1 cut(s) 1037
PfoI TCCNGGA 2 cut(s) 47, 883
PleI GAGTC 8 cut(s) 273, 345, 489, 645, 656, 1576, 3340, 3500
PpsI GAGTC 8 cut(s) 273, 345, 489, 645, 656, 1576, 3340, 3500
PpuMI RGGWCCY 2 cut(s) 1027, 1262
PscI ACATGT 5 cut(s) 930, 1958, 2134, 2234, 2336
Psp124BI GAGCTC 2 cut(s) 829, 2314
Psp5II RGGWCCY 2 cut(s) 1027, 1262
Psp6I CCWGG 8 cut(s) 47, 581, 883, 1030, 1090, 1450, 2945, 3026
PspFI CCCAGC 4 cut(s) 69, 2889, 2941, 2988
PspGI CCWGG 8 cut(s) 47, 581, 883, 1030, 1090, 1450, 2945, 3026
PspPPI RGGWCCY 2 cut(s) 1027, 1262
PspXI VCTCGAGB 2 cut(s) 822, 3159
PstI CTGCAG 4 cut(s) 853, 1784, 3232, 3388
PstNI CAGNNNCTG 1 cut(s) 2108
PsuI RGATCY 6 cut(s) 83, 1546, 1837, 2550, 3022, 3049
PvuII CAGCTG 2 cut(s) 2073, 3239
RsaI GTAC 8 cut(s) 900, 2005, 2341, 2517, 2916, 2968, 3196, 3453
RsaNI GTAC 8 cut(s) 899, 2004, 2340, 2516, 2915, 2967, 3195, 3452
SacI GAGCTC 2 cut(s) 829, 2314
SapI GCTCTTC 1 cut(s) 2765
SaqAI TTAA 9 cut(s) 870, 1475, 1650, 1874, 2175, 2469, 2961, 3437, 3533
SchI GAGTC 8 cut(s) 274, 346, 490, 646, 656, 1576, 3341, 3500
ScrFI CCNGG 9 cut(s) 49, 583, 885, 1032, 1092, 1452, 2798, 2947, 3028
SduI GDGCHC 8 cut(s) 78, 716, 823, 829, 1602, 1853, 2314, 2898
SfcI CTRYAG 7 cut(s) 166, 388, 849, 1780, 2109, 3228, 3384
Sfr274I CTCGAG 3 cut(s) 822, 1016, 3159
SfuI TTCGAA 2 cut(s) 16, 131
SinI GGWCC 8 cut(s) 45, 768, 1027, 1094, 1262, 2140, 2701, 2800
SlaI CTCGAG 3 cut(s) 822, 1016, 3159
SmlI CTYRAG 5 cut(s) 775, 822, 1016, 3085, 3159
SmoI CTYRAG 5 cut(s) 775, 822, 1016, 3085, 3159
SphI GCATGC 1 cut(s) 2222
SspMI CTAG 7 cut(s) 666, 1395, 2316, 2463, 3057, 3110, 3455
SstI GAGCTC 2 cut(s) 829, 2314
StyD4I CCNGG 9 cut(s) 47, 581, 883, 1030, 1090, 1450, 2796, 2945, 3026
StyI CCWWGG 3 cut(s) 2315, 3273, 3540
TaiI ACGT 1 cut(s) 2614
TaqI TCGA 8 cut(s) 16, 131, 788, 823, 1017, 2165, 3160, 3590
TatI WGTACW 3 cut(s) 898, 2339, 3451
TauI GCSGC 5 cut(s) 101, 104, 326, 676, 2229
Tru1I TTAA 9 cut(s) 870, 1475, 1650, 1874, 2175, 2469, 2961, 3437, 3533
Tru9I TTAA 9 cut(s) 870, 1475, 1650, 1874, 2175, 2469, 2961, 3437, 3533
TseFI GTSAC 7 cut(s) 458, 1232, 1574, 1907, 2237, 2351, 2395
Tsp45I GTSAC 7 cut(s) 458, 1232, 1574, 1907, 2237, 2351, 2395
TspDTI ATGAA 7 cut(s) 620, 671, 978, 2049, 2601, 3342, 3561
TspGWI ACGGA 2 cut(s) 1498, 3391
Van91I CCANNNNNTGG 1 cut(s) 1037
VneI GTGCAC 1 cut(s) 1598
VpaK11BI GGWCC 8 cut(s) 45, 768, 1027, 1094, 1262, 2140, 2701, 2800
XapI RAATTY 4 cut(s) 690, 1440, 1727, 2647
XceI RCATGY 9 cut(s) 934, 1500, 1962, 1968, 2138, 2222, 2238, 2340, 2921
XcmI CCANNNNNNNNNTGG 1 cut(s) 589
XhoI CTCGAG 3 cut(s) 822, 1016, 3159
XmaJI CCTAGG 1 cut(s) 2315
XmiI GTMKAC 1 cut(s) 3015
XspI CTAG 7 cut(s) 666, 1395, 2316, 2463, 3057, 3110, 3455
Zsp2I ATGCAT 1 cut(s) 2220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.