FvH4_5g17660

NF-X1-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011120
Physical Location & Seq
Forward (+)
10098587 .. 10102912
4326 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17660.t1

Sequence Viewer

Length: 3684 bp
ATGGCTTCTCAGGTCCGGGGTGAGCGTAGGGATAACAACAGGTCCAGGAATCCTTCTCAGCCTCGTTGGGTGCCGAGAGGCTCCAACCCTACCGCCGCTGCCGTGAACCCGCCTCCTCCGGGATTCAGTTTGAACTTACAGAATGGGAATGCCAACGGCCCTGCGGCAGGAGAGAGTCGGCAGCATAGAGGAGGACATGGTGGAAATGGAGGACAGCCCAATCATGTTTCGGCACCAGGAGAGAGTCGGCAGCATAGAGGAGGGTATAATGGAAATGGTGGGCAGCTTAACCAGGTGTCGGGACCATCAGAGAGTCGGCAGCAAAGAGGGGGGCATAATGGAAATGGAGGGCAGTCTAATTACAGCTTCACACCGTCAGATGGTCGGCAGCATAGAGGAGGACATAATGGAATTGTTGGGCAGTTCAATCACAGCTCTGTGCCATCAGAGAGTCGGCAGCACAGAGGAGGACACAATGGGAATGGAGGGCAGTCTAATCAAAGCTCCACATTATCGGAGAATCGGGAGCACAGAGGAGGACATCATGGTTACAGGGGTAATGTGGTTCGGCCGGTGAATCATAGAAGGGAGAGGGAAAAGAGTGAGAGTCAGGAGGGGATGGGAATGAAGGACTCTAGTTTGCCGCAGCTTGTGCAAGAGATTCAGGATAAACTGACTAAGGGTACTGTTGAGTGCATGATTTGTTATGATATGGTGAGGAGGTCTGCACCTGTATGGTCGTGCTCAAGCTGTTACTCGATTTTCCATCTGAATTGCATCAAGAAATGGGCTCGAGCTCCTACCTCTATTGATATGTCTGCAGGGAAGAATCAGGGTTTTAATTGGCGGTGTCCAGGATGTCAGTCTGTACAGCTCACATCGTCAAAGGAGATTCGCTATGTGTGTTTTTGCGGTAAGCGGACAGACCCACCTTCGGATTTGTATTTGACACCACATTCATGTGGAGAACATTGTGGGAAGCCACTGGAGAAGGAGGTTGCAGGAAGAGGAATAAGTAAGGATGATCTTTGCCCTCATATGTGTGTCTTGCAGTGCCACCCGGGTCCATGCCCTCCTTGTAAAGCATTTGCACCGCCGAGGTTATGCCCTTGTGGAAAGAAAACAATAACAACAAGATGCTCAGATCGGACTTCTGTTCTGACATGTGGCAATCAATGTAGTAAGCTTCTTGATTGTGGGCGTCACCGCTGTGAGCGGAAGTGCCATGTGGGTCCTTGTGATCCTTGTCAGGTGCCATTCAATGCTTCTTGCTTTTGCCTGAAAAAGGTGGAGGTTGTTCTATGTGAAGAGATGACAGTAAAGGGAGAGGTAAAAGCAGAGGATGGTGTTTTTTCTTGCAGTTCTAGTTGTTGTAAGAAGCTTAGCTGTGGCAATCATGTTTGCAGCGAAATTTGTCATCCAGGCCCTTGTGGAGAGTGCAATTTAATGCCACAGAATGTTAAGACATGCCATTGTGGGAAAACAAGCTTGCAGGAGGAACGCCAGAGTTGTTTGGATCCGATTCCAACTTGCTCACAAATATGTGAGAAGACTCTCCCTTGTGGGGTGCACCAGTGTCAACAGATATGCCATACTGGTGATTGCCCCCCTTGTTTGGTAAAAGTTACCCAAAAGTGCCGCTGTGAATCAACTTCTCGGAATGTGGAATGCTGTAATACAACGATGGAGAATCAGAAATTTACCTGTGATAAGCCTTGTGGACGGAAGAAGAATTGTGGAAGGCACCGTTGTAGTGAAAGGTGCTGTCCTCTTTCTAATTCAAATAATCGACTCTCAGGGGATTGGGATCCTCACTTGTGCTCTATGCCCTGTGGGAAGAAATTAAGGTGCGGGCAGCATTCTTGTGAATCTCTGTGTCACAGTGGCCACTGTCCTCCCTGCCTTGATACAATCTTCACTGACTTGACATGTGCATGTGGGAGAACTTCAATCCCTCCTCCATTGCCCTGTGGTACACCTCCTCCATCATGTCAGCTTCCTTGTTCGGTGCCTCAGCCTTGCGGACATTCATCTTCTCACAGCTGCCACTTTGGAGACTGCCCACCTTGTTCAGTGCCTGTGCCAAAGGAGTGCATTGGTGGTCATGTGGTTCTCAGGAACATTCCTTGTGGGTCGAAGGACATTAAATGTAACAAGTCCTGTGGGAAGATAAGGCAATGTGGTATGCATGCTTGTGGTAGAACATGTCACCCACCGCCTTGCGAGTCTTCCTCGTCAGCGGAAGTCGGCTCAAAATCTTCTTGTGGACAGATATGTGGTGCTCCTAGGAGGGATTGCAGGCACACATGTACTGCACCTTGTCACCCTTATGCTTCCTGTCCGGACGCCAGATGTGATTTCCTTGTGACAATCACGTGTTCTTGTGGCCGGATAACAGCAAATGTTCCTTGCGATTCTGGTGGCAGCAATGCTAGTTTTAATGCTGGCACTGTCTTTGAAGCTTCCATTATTCAAAAGTTGCCAGTACCACTGCAACCAGTAGAAGCCACCAACAAGAAGGTCCCACTTGGACAGAGGAAGCTCATGTGTGATGATGAATGTGCCAAGTTGGAGCGGAAACGTGTTCTTGCAGATGCTTTTGATATAGTTCCTCCAAATTTGGATGCACTCCATTTTGGTGAGACTAATGTTACTTCTGAGTTGCTTTCGGACCTTTTTAGGCGTGATCCAAAGTGGGTTTTATCGGTGGAGGAGAGATGCAAACAGTTGGTGCTTGGAAAGAGCAAAGGTGCTACAAGTGGCCTCCGGGTCCATGTCTTTTGTCCAATGCTGAAGGAAAAGAGAGATGTGGTTAGGGTGATTGCTGACAGGTGGAAGCTTGCTGTTCAAGCTGCTGGCTGGGAGCCCAAGCGTTTTATTGTGGTTCATGCTACTCCTAAATCCAAAGTCCCAGCCAGGGTGCTTGGGGTTAAGGGTACCACCACAGTAAACACATCCCAGCCTCCAGCTTTTGATCATTTAGTTGACATGGATCCCAGGCTTGTAGTTTCTTTCCCAGATCTTCCCAGGGATGCAGATATAAGTGCATTGGTTTTGAGGTTTGGTGGTGAATGTGAGCTTGTCTGGTTGAATGACAAGAACGCATTGGCTGTATTTAATGATCCTGCTCGAGCCGCAACTGCAATGAGGAGGTTGGATAATGGTACACTCTATCATGGGGCTATTGCTGTTTTGTCTGTGGCTTCATCTGGTTCTAATGCGTGGGGTGGAGTGGGAATAGCCAAGGAAGGAGCCTATACAGCACTGAAGGGTAATGCGTGGAAGAAGGCTGTTATTCGGGAGTCCTCTTGGAGAGAAGATTCATGGGGTGATGAAGAGTTGTCAGGTGGTTCTGCAGATGTCCAGGCATCTGTGTGGAAAAAGGAAGCTCCAATTGCTGCCTCATTAAACCGCTGGAGTGTACTTGATAGTGAAGTGCCTTTGGGATCATCTTCTGTATCGCCCACAGTAGAGGACTCTGGAAAGCATACTTCTGCTGGTGTATCTCCCACAGTAGAGGACTCTGGAAAGCATACCACTGCTGGTTTAATTTCTATGGTGGAATCAAATGCTAGTGGTTCAACTCCATCAAATGCAAGCAGTTCGACTTCCATGGGGCAGCTTGGAGGTTCTATTGCAGAAACATCTGAAGTGGTAGATGACTGGGAGAAGGCTTATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009696 GO:0009697 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010188 GO:0010310 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010817 GO:0016053 GO:0016070 GO:0016999 GO:0017000 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032774 GO:0032787 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046189 GO:0046394 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0098542 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05165 map05165
Pfam Domains
Protein Families
K_trans R3H zf-NF-X1

Protein Analysis

1228

Amino Acids

132.04

Weight (kDa)

8.54

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-NF-X1 PF01422 399 - 417 6.6e-06 NF-X1 type zinc finger
zf-NF-X1 PF01422 521 - 538 4.9e-06 NF-X1 type zinc finger
RRM_NFXL1 PF24435 987 - 1064 1.4e-42 NFXL1 RRM-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011120)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10170 AT1G10170 AT1G10170 AT1G10170
fragaria_vesca FvH4_5g17660
malus_domestica MD06G1232100.v1.1 MD14G1238900.v1.1
prunus_persica Prupe.5G236400_v2.0.a1
pyrus_communis pycom06g20620 pycom14g19990
rosa_chinensis RchiOBHm_Chr7g0178011
rosa_laevigata RLG00000005482
rosa_multiflora Rmu_sc0013399.1_g000001
rosa_roxburghii Rroxscaffold_3G00275290
rosa_rugosa Rorug06G0412300
rosa_samantha Rh7AG011800 Rh7BG011200 Rh7CG011800 Rh7DG011800
rosa_wichuraiana Rw7G000930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 2936
AccB1I GGYRCC 6 cut(s) 70, 232, 1252, 1743, 2008, 2936
AccBSI CCGCTC 2 cut(s) 1216, 2575
AccIII TCCGGA 1 cut(s) 2341
AcoI YGGCCR 3 cut(s) 569, 1885, 2386
AcsI RAATTY 3 cut(s) 1410, 1697, 2617
AcuI CTGAAG 3 cut(s) 2813, 3287, 3669
AcvI CACGTG 1 cut(s) 2376
AcyI GRCGYC 2 cut(s) 1201, 2346
AfaI GTAC 8 cut(s) 685, 870, 1975, 2311, 2487, 2938, 3166, 3423
AfiI CCNNNNNNNGG 9 cut(s) 119, 167, 298, 380, 934, 1285, 1564, 1615, 2917
AflIII ACRYGT 6 cut(s) 1163, 1928, 2204, 2306, 2375, 2581
AjnI CCWGG 9 cut(s) 44, 235, 291, 853, 1420, 2915, 2996, 3026, 3363
AleI CACNNNNGTG 1 cut(s) 1209
Alw21I GWGCWC 6 cut(s) 531, 746, 799, 1572, 1823, 2284
Alw26I GTCTC 2 cut(s) 2049, 2636
Alw44I GTGCAC 1 cut(s) 1568
AlwNI CAGNNNCTG 1 cut(s) 2078
Ama87I CYCGRG 3 cut(s) 792, 1060, 3129
Aor13HI TCCGGA 1 cut(s) 2341
AoxI GGCC 6 cut(s) 157, 569, 1423, 1885, 2386, 2761
ApaLI GTGCAC 1 cut(s) 1568
ApoI RAATTY 3 cut(s) 1410, 1697, 2617
Asp718I GGTACC 1 cut(s) 2936
AspA2I CCTAGG 1 cut(s) 2285
AsuC2I CCSGG 5 cut(s) 17, 120, 1061, 1062, 2768
AvaI CYCGRG 3 cut(s) 792, 1060, 3129
AvaII GGWCC 8 cut(s) 13, 42, 302, 1064, 1232, 2521, 2671, 2770
AvrII CCTAGG 1 cut(s) 2285
BaeGI GKGCMC 1 cut(s) 1572
BalI TGGCCA 1 cut(s) 1887
BamHI GGATCC 3 cut(s) 1516, 1807, 2992
BanI GGYRCC 6 cut(s) 70, 232, 1252, 1743, 2008, 2936
BanII GRGCYC 3 cut(s) 793, 799, 2868
BbrPI CACGTG 1 cut(s) 2376
BbsI GAAGAC 2 cut(s) 1556, 2220
Bbv12I GWGCWC 6 cut(s) 531, 746, 799, 1572, 1823, 2284
BbvCI CCTCAGC 1 cut(s) 2013
BccI CCATC 9 cut(s) 313, 374, 451, 613, 774, 1337, 1678, 1993, 3595
BceAI ACGGC 2 cut(s) 86, 172
BcgI CGANNNNNNTGC 2 cut(s) 3585, 3619
BciT130I CCWGG 9 cut(s) 46, 237, 293, 855, 1422, 2917, 2998, 3028, 3365
BclI TGATCA 1 cut(s) 2974
BcnI CCSGG 5 cut(s) 17, 120, 1061, 1062, 2768
BcoDI GTCTC 2 cut(s) 2049, 2636
BfaI CTAG 5 cut(s) 636, 1365, 2286, 2433, 3573
BfmI CTRYAG 2 cut(s) 819, 3354
BglII AGATCT 1 cut(s) 3019
BlnI CCTAGG 1 cut(s) 2285
BlpI GCTNAGC 1 cut(s) 1382
Bme18I GGWCC 8 cut(s) 13, 42, 302, 1064, 1232, 2521, 2671, 2770
BmeT110I CYCGRG 3 cut(s) 792, 1060, 3129
BmrI ACTGGG 1 cut(s) 3673
BmsI GCATC 7 cut(s) 786, 1127, 2584, 2614, 2708, 3022, 3377
BmuI ACTGGG 1 cut(s) 3673
BpiI GAAGAC 2 cut(s) 1556, 2220
BplI GAGNNNNNCTC 2 cut(s) 2216, 2248
BpmI CTGGAG 3 cut(s) 1007, 2949, 3436
Bpu10I CCTNAGC 1 cut(s) 2013
Bpu1102I GCTNAGC 1 cut(s) 1382
BpuEI CTTGAG 1 cut(s) 730
BpuMI CCSGG 5 cut(s) 17, 120, 1061, 1062, 2768
BsaAI YACGTR 1 cut(s) 2376
BsaBI GATNNNNATC 1 cut(s) 1806
BsaHI GRCGYC 2 cut(s) 1201, 2346
BsaWI WCCGGW 1 cut(s) 2341
BsaXI ACNNNNNCTCC 2 cut(s) 1966, 1996
Bsc4I CCNNNNNNNGG 9 cut(s) 119, 167, 298, 380, 934, 1285, 1564, 1615, 2917
Bse118I RCCGGY 1 cut(s) 571
Bse1I ACTGG 6 cut(s) 990, 1573, 1600, 2483, 2498, 3668
Bse3DI GCAATG 4 cut(s) 1961, 2183, 2434, 3150
Bse8I GATNNNNATC 1 cut(s) 1806
BseAI TCCGGA 1 cut(s) 2341
BseBI CCWGG 9 cut(s) 46, 237, 293, 855, 1422, 2917, 2998, 3028, 3365
BseGI GGATG 8 cut(s) 624, 863, 1027, 1348, 1417, 2629, 2954, 3037
BseJI GATNNNNATC 1 cut(s) 1806
BseLI CCNNNNNNNGG 9 cut(s) 119, 167, 298, 380, 934, 1285, 1564, 1615, 2917
BseMI GCAATG 4 cut(s) 1961, 2183, 2434, 3150
BseMII CTCAG 7 cut(s) 23, 71, 1155, 1809, 2027, 2128, 2649
BseNI ACTGG 6 cut(s) 990, 1573, 1600, 2483, 2498, 3668
BseSI GKGCMC 1 cut(s) 1572
BseX3I CGGCCG 1 cut(s) 569
BseYI CCCAGC 3 cut(s) 2859, 2911, 2958
BsgI GTGCAG 2 cut(s) 711, 2298
Bsh1285I CGRYCG 1 cut(s) 572
BshFI GGCC 6 cut(s) 159, 571, 1425, 1887, 2388, 2763
BshNI GGYRCC 6 cut(s) 70, 232, 1252, 1743, 2008, 2936
BsiEI CGRYCG 1 cut(s) 572
BsiHKAI GWGCWC 6 cut(s) 531, 746, 799, 1572, 1823, 2284
BsiHKCI CYCGRG 3 cut(s) 792, 1060, 3129
BsiSI CCGG 7 cut(s) 16, 119, 572, 1061, 2342, 2389, 2767
BslFI GGGAC 3 cut(s) 315, 2507, 2894
BslI CCNNNNNNNGG 9 cut(s) 119, 167, 298, 380, 934, 1285, 1564, 1615, 2917
BsmAI GTCTC 2 cut(s) 2049, 2636
BsmFI GGGAC 3 cut(s) 315, 2507, 2894
BsmI GAATGC 3 cut(s) 154, 1673, 1858
BsnI GGCC 6 cut(s) 159, 571, 1425, 1887, 2388, 2763
BsoBI CYCGRG 3 cut(s) 792, 1060, 3129
Bsp1286I GDGCHC 8 cut(s) 531, 746, 793, 799, 1572, 1823, 2284, 2868
Bsp13I TCCGGA 1 cut(s) 2341
Bsp1407I TGTACA 1 cut(s) 868
Bsp1720I GCTNAGC 1 cut(s) 1382
Bsp19I CCATGG 1 cut(s) 3612
BspANI GGCC 6 cut(s) 159, 571, 1425, 1887, 2388, 2763
BspCNI CTCAG 7 cut(s) 22, 70, 1154, 1808, 2026, 2127, 2650
BspEI TCCGGA 1 cut(s) 2341
BspMAI CTGCAG 2 cut(s) 823, 3358
BspT107I GGYRCC 6 cut(s) 70, 232, 1252, 1743, 2008, 2936
BsrBI CCGCTC 2 cut(s) 1216, 2575
BsrDI GCAATG 4 cut(s) 1961, 2183, 2434, 3150
BsrFI RCCGGY 1 cut(s) 571
BsrGI TGTACA 1 cut(s) 868
BsrI ACTGG 6 cut(s) 990, 1573, 1600, 2483, 2498, 3668
BssAI RCCGGY 1 cut(s) 571
BssNI GRCGYC 2 cut(s) 1201, 2346
BssT1I CCWWGG 3 cut(s) 2285, 3243, 3612
Bst2UI CCWGG 9 cut(s) 46, 237, 293, 855, 1422, 2917, 2998, 3028, 3365
Bst6I CTCTTC 3 cut(s) 1000, 1302, 3330
BstACI GRCGYC 2 cut(s) 1201, 2346
BstAPI GCANNNNNTGC 1 cut(s) 652
BstAUI TGTACA 1 cut(s) 868
BstBAI YACGTR 1 cut(s) 2376
BstC8I GCNNGC 8 cut(s) 1490, 1853, 2190, 2300, 2446, 2841, 2857, 3598
BstDEI CTNAG 9 cut(s) 9, 57, 678, 1141, 1382, 1795, 2013, 2114, 2658
BstDSI CCRYGG 1 cut(s) 3612
BstENI CCTNNNNNAGG 2 cut(s) 165, 1283
BstF5I GGATG 8 cut(s) 624, 863, 1027, 1348, 1417, 2629, 2954, 3037
BstMAI GTCTC 2 cut(s) 2049, 2636
BstMCI CGRYCG 1 cut(s) 572
BstMWI GCNNNNNNNGC 6 cut(s) 652, 2849, 3134, 3140, 3260, 3395
BstNI CCWGG 9 cut(s) 46, 237, 293, 855, 1422, 2917, 2998, 3028, 3365
BstNSI RCATGY 7 cut(s) 1167, 1470, 1932, 1938, 2192, 2208, 2310
BstSFI CTRYAG 2 cut(s) 819, 3354
BstSLI GKGCMC 1 cut(s) 1572
BstV2I GAAGAC 2 cut(s) 1556, 2220
BstX2I RGATCY 4 cut(s) 1516, 1807, 2992, 3019
BstYI RGATCY 4 cut(s) 1516, 1807, 2992, 3019
BstZI CGGCCG 1 cut(s) 569
BsuRI GGCC 6 cut(s) 159, 571, 1425, 1887, 2388, 2763
BtgI CCRYGG 1 cut(s) 3612
BtsCI GGATG 8 cut(s) 624, 863, 1027, 1348, 1417, 2629, 2954, 3037
BtsI GCAGTG 3 cut(s) 1058, 2489, 3537
Cac8I GCNNGC 8 cut(s) 1490, 1853, 2190, 2300, 2446, 2841, 2857, 3598
CaiI CAGNNNCTG 1 cut(s) 2078
Cfr10I RCCGGY 1 cut(s) 571
Cfr9I CCCGGG 1 cut(s) 1060
CseI GACGC 2 cut(s) 1190, 2354
CsiI ACCWGGT 1 cut(s) 291
Csp6I GTAC 8 cut(s) 684, 869, 1974, 2310, 2486, 2937, 3165, 3422
CspCI CAANNNNNGTGG 2 cut(s) 2143, 2178
CviQI GTAC 8 cut(s) 684, 869, 1974, 2310, 2486, 2937, 3165, 3422
DdeI CTNAG 9 cut(s) 9, 57, 678, 1141, 1382, 1795, 2013, 2114, 2658
EaeI YGGCCR 3 cut(s) 569, 1885, 2386
EagI CGGCCG 1 cut(s) 569
Eam1104I CTCTTC 3 cut(s) 1000, 1302, 3330
EarI CTCTTC 3 cut(s) 1000, 1302, 3330
Ecl136II GAGCTC 1 cut(s) 797
EclXI CGGCCG 1 cut(s) 569
Eco130I CCWWGG 3 cut(s) 2285, 3243, 3612
Eco24I GRGCYC 3 cut(s) 793, 799, 2868
Eco47I GGWCC 8 cut(s) 13, 42, 302, 1064, 1232, 2521, 2671, 2770
Eco52I CGGCCG 1 cut(s) 569
Eco53kI GAGCTC 1 cut(s) 797
Eco57I CTGAAG 3 cut(s) 2813, 3287, 3669
Eco72I CACGTG 1 cut(s) 2376
Eco88I CYCGRG 3 cut(s) 792, 1060, 3129
EcoICRI GAGCTC 1 cut(s) 797
EcoNI CCTNNNNNAGG 2 cut(s) 165, 1283
EcoO109I RGGNCCY 3 cut(s) 1232, 1424, 2521
EcoRII CCWGG 9 cut(s) 44, 235, 291, 853, 1420, 2915, 2996, 3026, 3363
EcoT14I CCWWGG 3 cut(s) 2285, 3243, 3612
EcoT22I ATGCAT 1 cut(s) 2190
EcoT38I GRGCYC 3 cut(s) 793, 799, 2868
ErhI CCWWGG 3 cut(s) 2285, 3243, 3612
FaqI GGGAC 3 cut(s) 315, 2507, 2894
FauI CCCGC 2 cut(s) 117, 1844
FauNDI CATATG 1 cut(s) 1038
FbaI TGATCA 1 cut(s) 2974
FokI GGATG 8 cut(s) 631, 870, 1034, 1355, 1404, 2636, 2941, 3044
FriOI GRGCYC 3 cut(s) 793, 799, 2868
FspBI CTAG 5 cut(s) 636, 1365, 2286, 2433, 3573
GsaI CCCAGC 3 cut(s) 2863, 2915, 2962
GsuI CTGGAG 3 cut(s) 1007, 2949, 3436
HaeIII GGCC 6 cut(s) 159, 571, 1425, 1887, 2388, 2763
HapII CCGG 7 cut(s) 16, 119, 572, 1061, 2342, 2389, 2767
HgaI GACGC 2 cut(s) 1190, 2354
Hin1I GRCGYC 2 cut(s) 1201, 2346
HincII GTYRAC 2 cut(s) 1580, 2986
HindII GTYRAC 2 cut(s) 1580, 2986
HindIII AAGCTT 5 cut(s) 1184, 1379, 1486, 2460, 2837
HpaII CCGG 7 cut(s) 16, 119, 572, 1061, 2342, 2389, 2767
HpyCH4IV ACGT 2 cut(s) 2375, 2581
HpyF10VI GCNNNNNNNGC 6 cut(s) 652, 2849, 3134, 3140, 3260, 3395
HpyF3I CTNAG 9 cut(s) 9, 57, 678, 1141, 1382, 1795, 2013, 2114, 2658
HpySE526I ACGT 2 cut(s) 2375, 2581
Hsp92I GRCGYC 2 cut(s) 1201, 2346
Kpn2I TCCGGA 1 cut(s) 2341
KpnI GGTACC 1 cut(s) 2940
Ksp22I TGATCA 1 cut(s) 2974
LmnI GCTCC 9 cut(s) 86, 509, 526, 802, 2287, 2572, 2863, 3251, 3394
LweI GCATC 7 cut(s) 786, 1127, 2584, 2614, 2708, 3022, 3377
MabI ACCWGGT 1 cut(s) 291
MaeI CTAG 5 cut(s) 636, 1365, 2286, 2433, 3573
MaeII ACGT 2 cut(s) 2375, 2581
MbiI CCGCTC 2 cut(s) 1216, 2575
MfeI CAATTG 1 cut(s) 3393
MflI RGATCY 4 cut(s) 1516, 1807, 2992, 3019
MhlI GDGCHC 8 cut(s) 531, 746, 793, 799, 1572, 1823, 2284, 2868
MlsI TGGCCA 1 cut(s) 1887
MluNI TGGCCA 1 cut(s) 1887
MmeI TCCRAC 4 cut(s) 108, 1550, 2550, 3135
Mox20I TGGCCA 1 cut(s) 1887
Mph1103I ATGCAT 1 cut(s) 2190
MroI TCCGGA 1 cut(s) 2341
MscI TGGCCA 1 cut(s) 1887
Msp20I TGGCCA 1 cut(s) 1887
MspA1I CMGCKG 6 cut(s) 98, 1209, 1641, 2043, 2240, 3414
MspI CCGG 7 cut(s) 16, 119, 572, 1061, 2342, 2389, 2767
MunI CAATTG 1 cut(s) 3393
Mva1269I GAATGC 3 cut(s) 154, 1673, 1858
MvaI CCWGG 9 cut(s) 46, 237, 293, 855, 1422, 2917, 2998, 3028, 3365
MwoI GCNNNNNNNGC 6 cut(s) 652, 2849, 3134, 3140, 3260, 3395
NciI CCSGG 5 cut(s) 17, 120, 1061, 1062, 2768
NcoI CCATGG 1 cut(s) 3612
NdeI CATATG 1 cut(s) 1038
NmeAIII GCCGAG 2 cut(s) 99, 1122
NmuCI GTSAC 5 cut(s) 1202, 1877, 2207, 2321, 2365
NsiI ATGCAT 1 cut(s) 2190
NspI RCATGY 7 cut(s) 1167, 1470, 1932, 1938, 2192, 2208, 2310
OliI CACNNNNGTG 1 cut(s) 1209
PaeI GCATGC 1 cut(s) 2192
PaeR7I CTCGAG 2 cut(s) 792, 3129
PasI CCCWGGG 1 cut(s) 3027
PciI ACATGT 4 cut(s) 1163, 1928, 2204, 2306
PctI GAATGC 3 cut(s) 154, 1673, 1858
PfoI TCCNGGA 3 cut(s) 44, 118, 853
PmaCI CACGTG 1 cut(s) 2376
PmlI CACGTG 1 cut(s) 2376
Ppu21I YACGTR 1 cut(s) 2376
PpuMI RGGWCCY 2 cut(s) 1232, 2521
PscI ACATGT 4 cut(s) 1163, 1928, 2204, 2306
Psp124BI GAGCTC 1 cut(s) 799
Psp5II RGGWCCY 2 cut(s) 1232, 2521
Psp6I CCWGG 9 cut(s) 44, 235, 291, 853, 1420, 2915, 2996, 3026, 3363
PspCI CACGTG 1 cut(s) 2376
PspFI CCCAGC 3 cut(s) 2859, 2911, 2958
PspGI CCWGG 9 cut(s) 44, 235, 291, 853, 1420, 2915, 2996, 3026, 3363
PspPPI RGGWCCY 2 cut(s) 1232, 2521
PspXI VCTCGAGB 2 cut(s) 792, 3129
PstI CTGCAG 2 cut(s) 823, 3358
PstNI CAGNNNCTG 1 cut(s) 2078
PsuI RGATCY 4 cut(s) 1516, 1807, 2992, 3019
PvuII CAGCTG 1 cut(s) 2043
RsaI GTAC 8 cut(s) 685, 870, 1975, 2311, 2487, 2938, 3166, 3423
RsaNI GTAC 8 cut(s) 684, 869, 1974, 2310, 2486, 2937, 3165, 3422
SacI GAGCTC 1 cut(s) 799
SduI GDGCHC 8 cut(s) 531, 746, 793, 799, 1572, 1823, 2284, 2868
SexAI ACCWGGT 1 cut(s) 291
SfaNI GCATC 7 cut(s) 786, 1127, 2584, 2614, 2708, 3022, 3377
SfcI CTRYAG 2 cut(s) 819, 3354
Sfr274I CTCGAG 2 cut(s) 792, 3129
SinI GGWCC 8 cut(s) 13, 42, 302, 1064, 1232, 2521, 2671, 2770
SlaI CTCGAG 2 cut(s) 792, 3129
SmaI CCCGGG 1 cut(s) 1062
SmlI CTYRAG 3 cut(s) 745, 792, 3129
SmoI CTYRAG 3 cut(s) 745, 792, 3129
SphI GCATGC 1 cut(s) 2192
SspMI CTAG 5 cut(s) 636, 1365, 2286, 2433, 3573
SstI GAGCTC 1 cut(s) 799
StyI CCWWGG 3 cut(s) 2285, 3243, 3612
TaiI ACGT 2 cut(s) 2378, 2584
TaqI TCGA 6 cut(s) 758, 793, 1789, 2135, 3130, 3605
TatI WGTACW 3 cut(s) 868, 2309, 3421
TauI GCSGC 5 cut(s) 98, 167, 646, 1641, 3137
TseFI GTSAC 5 cut(s) 1202, 1877, 2207, 2321, 2365
Tsp45I GTSAC 5 cut(s) 1202, 1877, 2207, 2321, 2365
TspDTI ATGAA 8 cut(s) 641, 948, 2019, 2571, 2876, 3195, 3312, 3348
TspGWI ACGGA 1 cut(s) 1738
TspMI CCCGGG 1 cut(s) 1060
VneI GTGCAC 1 cut(s) 1568
VpaK11BI GGWCC 8 cut(s) 13, 42, 302, 1064, 1232, 2521, 2671, 2770
XagI CCTNNNNNAGG 2 cut(s) 165, 1283
XapI RAATTY 3 cut(s) 1410, 1697, 2617
XceI RCATGY 7 cut(s) 1167, 1470, 1932, 1938, 2192, 2208, 2310
XhoI CTCGAG 2 cut(s) 792, 3129
XmaI CCCGGG 1 cut(s) 1060
XmaJI CCTAGG 1 cut(s) 2285
XspI CTAG 5 cut(s) 636, 1365, 2286, 2433, 3573
Zsp2I ATGCAT 1 cut(s) 2190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.