NF-X1-type zinc finger protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G10170 AT1G10170 AT1G10170 AT1G10170 |
| fragaria_vesca | FvH4_5g17660 |
| malus_domestica | MD06G1232100.v1.1 MD14G1238900.v1.1 |
| prunus_persica | Prupe.5G236400_v2.0.a1 |
| pyrus_communis | pycom06g20620 pycom14g19990 |
| rosa_chinensis | RchiOBHm_Chr7g0178011 |
| rosa_laevigata | RLG00000005482 |
| rosa_multiflora | Rmu_sc0013399.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00275290 |
| rosa_rugosa | Rorug06G0412300 |
| rosa_samantha | Rh7AG011800 Rh7BG011200 Rh7CG011800 Rh7DG011800 |
| rosa_wichuraiana | Rw7G000930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 466, 3101 |
| AccB1I | GGYRCC | 5 cut(s) | 226, 397, 466, 1908, 3101 |
| AccBSI | CCGCTC | 2 cut(s) | 1381, 2740 |
| AccI | GTMKAC | 1 cut(s) | 3150 |
| AccII | CGCG | 1 cut(s) | 3269 |
| AcoI | YGGCCR | 3 cut(s) | 734, 2050, 2551 |
| AcsI | RAATTY | 4 cut(s) | 825, 1575, 1862, 2782 |
| AcuI | CTGAAG | 6 cut(s) | 348, 2978, 3354, 3452, 3714, 3789 |
| AcyI | GRCGYC | 1 cut(s) | 1366 |
| AdeI | CACNNNGTG | 1 cut(s) | 2387 |
| AfaI | GTAC | 9 cut(s) | 468, 1035, 2140, 2476, 2652, 3051, 3103, 3331, 3588 |
| AflIII | ACRYGT | 6 cut(s) | 1065, 2093, 2269, 2369, 2746, 3267 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2273 |
| AjnI | CCWGG | 8 cut(s) | 200, 716, 1018, 1165, 1225, 1585, 3080, 3161 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 515, 547 |
| AleI | CACNNNNGTG | 2 cut(s) | 1374, 3110 |
| Alw21I | GWGCWC | 4 cut(s) | 964, 1737, 1988, 2449 |
| Alw26I | GTCTC | 3 cut(s) | 401, 2214, 2801 |
| Alw44I | GTGCAC | 1 cut(s) | 1733 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2243 |
| Ama87I | CYCGRG | 3 cut(s) | 957, 1151, 3294 |
| AoxI | GGCC | 7 cut(s) | 6, 340, 734, 1588, 2050, 2551, 2926 |
| ApaLI | GTGCAC | 1 cut(s) | 1733 |
| ApoI | RAATTY | 4 cut(s) | 825, 1575, 1862, 2782 |
| Asp718I | GGTACC | 2 cut(s) | 466, 3101 |
| AspA2I | CCTAGG | 1 cut(s) | 2450 |
| AsuC2I | CCSGG | 2 cut(s) | 10, 2933 |
| AsuII | TTCGAA | 2 cut(s) | 172, 284 |
| AvaI | CYCGRG | 3 cut(s) | 957, 1151, 3294 |
| AvaII | GGWCC | 8 cut(s) | 198, 903, 1162, 1229, 1397, 2275, 2836, 2935 |
| AvrII | CCTAGG | 1 cut(s) | 2450 |
| AxyI | CCTNAGG | 1 cut(s) | 2279 |
| BaeGI | GKGCMC | 3 cut(s) | 231, 851, 1737 |
| BalI | TGGCCA | 1 cut(s) | 2052 |
| BamHI | GGATCC | 4 cut(s) | 236, 1681, 1972, 3157 |
| BanI | GGYRCC | 5 cut(s) | 226, 397, 466, 1908, 3101 |
| BanII | GRGCYC | 4 cut(s) | 958, 964, 2449, 3033 |
| BbsI | GAAGAC | 1 cut(s) | 3462 |
| Bbv12I | GWGCWC | 4 cut(s) | 964, 1737, 1988, 2449 |
| BbvCI | CCTCAGC | 1 cut(s) | 2178 |
| BccI | CCATC | 6 cut(s) | 290, 539, 778, 939, 1502, 2158 |
| BceAI | ACGGC | 1 cut(s) | 245 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 284, 318, 3681, 3705, 3715, 3739 |
| BciT130I | CCWGG | 8 cut(s) | 202, 718, 1020, 1167, 1227, 1587, 3082, 3163 |
| BciVI | GTATCC | 1 cut(s) | 3634 |
| BclI | TGATCA | 1 cut(s) | 3139 |
| BcnI | CCSGG | 2 cut(s) | 10, 2933 |
| BcoDI | GTCTC | 3 cut(s) | 401, 2214, 2801 |
| BfaI | CTAG | 7 cut(s) | 801, 1530, 2451, 2598, 3192, 3245, 3590 |
| BfmI | CTRYAG | 6 cut(s) | 526, 984, 1655, 1915, 2244, 3519 |
| BfuI | GTATCC | 1 cut(s) | 3634 |
| BglII | AGATCT | 1 cut(s) | 3184 |
| BlnI | CCTAGG | 1 cut(s) | 2450 |
| BlpI | GCTNAGC | 2 cut(s) | 213, 1547 |
| Bme18I | GGWCC | 8 cut(s) | 198, 903, 1162, 1229, 1397, 2275, 2836, 2935 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2273 |
| BmeT110I | CYCGRG | 3 cut(s) | 957, 1151, 3294 |
| BmrI | ACTGGG | 1 cut(s) | 3793 |
| BmuI | ACTGGG | 1 cut(s) | 3793 |
| BpiI | GAAGAC | 1 cut(s) | 3462 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2381, 2413 |
| BpmI | CTGGAG | 3 cut(s) | 1475, 3114, 3601 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2178 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 213, 1547 |
| Bpu14I | TTCGAA | 2 cut(s) | 172, 284 |
| BpuEI | CTTGAG | 2 cut(s) | 895, 3241 |
| BpuMI | CCSGG | 2 cut(s) | 10, 2933 |
| BsaAI | YACGTR | 1 cut(s) | 1066 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1971 |
| BsaHI | GRCGYC | 1 cut(s) | 1366 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 121, 151, 757, 787, 1970, 2000, 2131, 2161 |
| Bse118I | RCCGGY | 2 cut(s) | 342, 2411 |
| Bse1I | ACTGG | 5 cut(s) | 1738, 1765, 2648, 2663, 3788 |
| Bse21I | CCTNAGG | 1 cut(s) | 2279 |
| Bse3DI | GCAATG | 3 cut(s) | 2126, 2348, 3315 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1971 |
| BseBI | CCWGG | 8 cut(s) | 202, 718, 1020, 1167, 1227, 1587, 3082, 3163 |
| BseGI | GGATG | 8 cut(s) | 315, 550, 789, 1028, 1192, 1582, 2794, 3119 |
| BseJI | GATNNNNATC | 1 cut(s) | 1971 |
| BseMI | GCAATG | 3 cut(s) | 2126, 2348, 3315 |
| BseMII | CTCAG | 6 cut(s) | 179, 227, 1320, 2192, 2293, 2814 |
| BseNI | ACTGG | 5 cut(s) | 1738, 1765, 2648, 2663, 3788 |
| BseRI | GAGGAG | 9 cut(s) | 369, 438, 576, 714, 898, 2112, 2136, 2891, 3328 |
| BseSI | GKGCMC | 3 cut(s) | 231, 851, 1737 |
| BseYI | CCCAGC | 4 cut(s) | 222, 3024, 3076, 3123 |
| BsgI | GTGCAG | 3 cut(s) | 876, 2463, 3548 |
| Bsh1236I | CGCG | 1 cut(s) | 3269 |
| BshFI | GGCC | 7 cut(s) | 8, 342, 736, 1590, 2052, 2553, 2928 |
| BshNI | GGYRCC | 5 cut(s) | 226, 397, 466, 1908, 3101 |
| BsiHKAI | GWGCWC | 4 cut(s) | 964, 1737, 1988, 2449 |
| BsiHKCI | CYCGRG | 3 cut(s) | 957, 1151, 3294 |
| BsiSI | CCGG | 5 cut(s) | 9, 343, 2412, 2554, 2932 |
| BslFI | GGGAC | 4 cut(s) | 510, 1148, 2318, 3059 |
| BsmAI | GTCTC | 3 cut(s) | 401, 2214, 2801 |
| BsmFI | GGGAC | 4 cut(s) | 510, 1148, 2318, 3059 |
| BsmI | GAATGC | 4 cut(s) | 307, 1250, 2023, 2467 |
| BsnI | GGCC | 7 cut(s) | 8, 342, 736, 1590, 2052, 2553, 2928 |
| BsoBI | CYCGRG | 3 cut(s) | 957, 1151, 3294 |
| Bsp119I | TTCGAA | 2 cut(s) | 172, 284 |
| Bsp1286I | GDGCHC | 8 cut(s) | 231, 851, 958, 964, 1737, 1988, 2449, 3033 |
| Bsp1407I | TGTACA | 1 cut(s) | 1033 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 213, 1547 |
| Bsp19I | CCATGG | 1 cut(s) | 3675 |
| BspANI | GGCC | 7 cut(s) | 8, 342, 736, 1590, 2052, 2553, 2928 |
| BspCNI | CTCAG | 6 cut(s) | 178, 226, 1319, 2191, 2292, 2815 |
| BspFNI | CGCG | 1 cut(s) | 3269 |
| BspMAI | CTGCAG | 4 cut(s) | 988, 1659, 1919, 3523 |
| BspQI | GCTCTTC | 1 cut(s) | 2900 |
| BspT104I | TTCGAA | 2 cut(s) | 172, 284 |
| BspT107I | GGYRCC | 5 cut(s) | 226, 397, 466, 1908, 3101 |
| BsrBI | CCGCTC | 2 cut(s) | 1381, 2740 |
| BsrDI | GCAATG | 3 cut(s) | 2126, 2348, 3315 |
| BsrFI | RCCGGY | 2 cut(s) | 342, 2411 |
| BsrGI | TGTACA | 1 cut(s) | 1033 |
| BsrI | ACTGG | 5 cut(s) | 1738, 1765, 2648, 2663, 3788 |
| BssAI | RCCGGY | 2 cut(s) | 342, 2411 |
| BssNI | GRCGYC | 1 cut(s) | 1366 |
| BssT1I | CCWWGG | 3 cut(s) | 2450, 3408, 3675 |
| Bst2UI | CCWGG | 8 cut(s) | 202, 718, 1020, 1167, 1227, 1587, 3082, 3163 |
| Bst6I | CTCTTC | 2 cut(s) | 2900, 3495 |
| BstACI | GRCGYC | 1 cut(s) | 1366 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 817 |
| BstAUI | TGTACA | 1 cut(s) | 1033 |
| BstBAI | YACGTR | 1 cut(s) | 1066 |
| BstBI | TTCGAA | 2 cut(s) | 172, 284 |
| BstDEI | CTNAG | 9 cut(s) | 165, 213, 843, 1306, 1547, 2178, 2279, 2730, 2823 |
| BstDSI | CCRYGG | 3 cut(s) | 1262, 1616, 3675 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1658 |
| BstF5I | GGATG | 8 cut(s) | 315, 550, 789, 1028, 1192, 1582, 2794, 3119 |
| BstFNI | CGCG | 1 cut(s) | 3269 |
| BstMAI | GTCTC | 3 cut(s) | 401, 2214, 2801 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 257, 817, 2653, 3014, 3299, 3305, 3425, 3560 |
| BstNI | CCWGG | 8 cut(s) | 202, 718, 1020, 1167, 1227, 1587, 3082, 3163 |
| BstNSI | RCATGY | 7 cut(s) | 1635, 2097, 2103, 2273, 2357, 2373, 3056 |
| BstSFI | CTRYAG | 6 cut(s) | 526, 984, 1655, 1915, 2244, 3519 |
| BstSLI | GKGCMC | 3 cut(s) | 231, 851, 1737 |
| BstUI | CGCG | 1 cut(s) | 3269 |
| BstV2I | GAAGAC | 1 cut(s) | 3462 |
| BstX2I | RGATCY | 5 cut(s) | 236, 1681, 1972, 3157, 3184 |
| BstYI | RGATCY | 5 cut(s) | 236, 1681, 1972, 3157, 3184 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2279 |
| BsuI | GTATCC | 1 cut(s) | 3634 |
| BsuRI | GGCC | 7 cut(s) | 8, 342, 736, 1590, 2052, 2553, 2928 |
| BtgI | CCRYGG | 3 cut(s) | 1262, 1616, 3675 |
| BtsCI | GGATG | 8 cut(s) | 315, 550, 789, 1028, 1192, 1582, 2794, 3119 |
| BtsI | GCAGTG | 3 cut(s) | 1223, 1576, 1924 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2243 |
| Cfr10I | RCCGGY | 2 cut(s) | 342, 2411 |
| CseI | GACGC | 1 cut(s) | 1355 |
| Csp6I | GTAC | 9 cut(s) | 467, 1034, 2139, 2475, 2651, 3050, 3102, 3330, 3587 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 955, 990, 2308, 2343 |
| CviQI | GTAC | 9 cut(s) | 467, 1034, 2139, 2475, 2651, 3050, 3102, 3330, 3587 |
| DdeI | CTNAG | 9 cut(s) | 165, 213, 843, 1306, 1547, 2178, 2279, 2730, 2823 |
| DraIII | CACNNNGTG | 1 cut(s) | 2387 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2273 |
| EaeI | YGGCCR | 3 cut(s) | 734, 2050, 2551 |
| Eam1104I | CTCTTC | 2 cut(s) | 2900, 3495 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2273 |
| EarI | CTCTTC | 2 cut(s) | 2900, 3495 |
| Ecl136II | GAGCTC | 2 cut(s) | 962, 2447 |
| Eco130I | CCWWGG | 3 cut(s) | 2450, 3408, 3675 |
| Eco24I | GRGCYC | 4 cut(s) | 958, 964, 2449, 3033 |
| Eco47I | GGWCC | 8 cut(s) | 198, 903, 1162, 1229, 1397, 2275, 2836, 2935 |
| Eco53kI | GAGCTC | 2 cut(s) | 962, 2447 |
| Eco57I | CTGAAG | 6 cut(s) | 348, 2978, 3354, 3452, 3714, 3789 |
| Eco81I | CCTNAGG | 1 cut(s) | 2279 |
| Eco88I | CYCGRG | 3 cut(s) | 957, 1151, 3294 |
| EcoICRI | GAGCTC | 2 cut(s) | 962, 2447 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1658 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1162, 1397, 1589 |
| EcoRII | CCWGG | 8 cut(s) | 200, 716, 1018, 1165, 1225, 1585, 3080, 3161 |
| EcoT14I | CCWWGG | 3 cut(s) | 2450, 3408, 3675 |
| EcoT22I | ATGCAT | 1 cut(s) | 2355 |
| EcoT38I | GRGCYC | 4 cut(s) | 958, 964, 2449, 3033 |
| ErhI | CCWWGG | 3 cut(s) | 2450, 3408, 3675 |
| FaqI | GGGAC | 4 cut(s) | 510, 1148, 2318, 3059 |
| FauI | CCCGC | 3 cut(s) | 276, 2009, 3727 |
| FauNDI | CATATG | 1 cut(s) | 1203 |
| FbaI | TGATCA | 1 cut(s) | 3139 |
| FblI | GTMKAC | 1 cut(s) | 3150 |
| FokI | GGATG | 8 cut(s) | 322, 557, 796, 1035, 1199, 1569, 2801, 3106 |
| FriOI | GRGCYC | 4 cut(s) | 958, 964, 2449, 3033 |
| FspBI | CTAG | 7 cut(s) | 801, 1530, 2451, 2598, 3192, 3245, 3590 |
| GsaI | CCCAGC | 4 cut(s) | 226, 3028, 3080, 3127 |
| GsuI | CTGGAG | 3 cut(s) | 1475, 3114, 3601 |
| HaeIII | GGCC | 7 cut(s) | 8, 342, 736, 1590, 2052, 2553, 2928 |
| HapII | CCGG | 5 cut(s) | 9, 343, 2412, 2554, 2932 |
| HgaI | GACGC | 1 cut(s) | 1355 |
| Hin1I | GRCGYC | 1 cut(s) | 1366 |
| HincII | GTYRAC | 1 cut(s) | 1745 |
| HindII | GTYRAC | 1 cut(s) | 1745 |
| HindIII | AAGCTT | 4 cut(s) | 1349, 1544, 2625, 3002 |
| HpaII | CCGG | 5 cut(s) | 9, 343, 2412, 2554, 2932 |
| Hpy99I | CGWCG | 1 cut(s) | 610 |
| HpyCH4IV | ACGT | 2 cut(s) | 1065, 2746 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 257, 817, 2653, 3014, 3299, 3305, 3425, 3560 |
| HpyF3I | CTNAG | 9 cut(s) | 165, 213, 843, 1306, 1547, 2178, 2279, 2730, 2823 |
| HpySE526I | ACGT | 2 cut(s) | 1065, 2746 |
| Hsp92I | GRCGYC | 1 cut(s) | 1366 |
| KpnI | GGTACC | 2 cut(s) | 470, 3105 |
| KroI | GCCGGC | 2 cut(s) | 342, 2411 |
| KroNI | GCCGGC | 2 cut(s) | 344, 2413 |
| Ksp22I | TGATCA | 1 cut(s) | 3139 |
| LguI | GCTCTTC | 1 cut(s) | 2900 |
| LmnI | GCTCC | 9 cut(s) | 967, 1991, 2166, 2444, 2452, 2737, 3028, 3416, 3559 |
| MaeI | CTAG | 7 cut(s) | 801, 1530, 2451, 2598, 3192, 3245, 3590 |
| MaeII | ACGT | 2 cut(s) | 1065, 2746 |
| MaeIII | GTNAC | 9 cut(s) | 593, 1367, 1709, 1789, 2042, 2315, 2372, 2486, 2530 |
| MbiI | CCGCTC | 2 cut(s) | 1381, 2740 |
| MfeI | CAATTG | 2 cut(s) | 2891, 3558 |
| MflI | RGATCY | 5 cut(s) | 236, 1681, 1972, 3157, 3184 |
| MhlI | GDGCHC | 8 cut(s) | 231, 851, 958, 964, 1737, 1988, 2449, 3033 |
| MlsI | TGGCCA | 1 cut(s) | 2052 |
| MluI | ACGCGT | 1 cut(s) | 3267 |
| MluNI | TGGCCA | 1 cut(s) | 2052 |
| MlyI | GAGTC | 8 cut(s) | 403, 487, 628, 781, 791, 1711, 3476, 3635 |
| MmeI | TCCRAC | 6 cut(s) | 264, 546, 1715, 2715, 2814, 3300 |
| Mox20I | TGGCCA | 1 cut(s) | 2052 |
| Mph1103I | ATGCAT | 1 cut(s) | 2355 |
| MroNI | GCCGGC | 2 cut(s) | 342, 2411 |
| MscI | TGGCCA | 1 cut(s) | 2052 |
| Msp20I | TGGCCA | 1 cut(s) | 2052 |
| MspA1I | CMGCKG | 7 cut(s) | 257, 1374, 1914, 2208, 3374, 3579, 3734 |
| MspI | CCGG | 5 cut(s) | 9, 343, 2412, 2554, 2932 |
| MunI | CAATTG | 2 cut(s) | 2891, 3558 |
| Mva1269I | GAATGC | 4 cut(s) | 307, 1250, 2023, 2467 |
| MvaI | CCWGG | 8 cut(s) | 202, 718, 1020, 1167, 1227, 1587, 3082, 3163 |
| MvnI | CGCG | 1 cut(s) | 3269 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 257, 817, 2653, 3014, 3299, 3305, 3425, 3560 |
| NaeI | GCCGGC | 2 cut(s) | 344, 2413 |
| NciI | CCSGG | 2 cut(s) | 10, 2933 |
| NcoI | CCATGG | 1 cut(s) | 3675 |
| NdeI | CATATG | 1 cut(s) | 1203 |
| NgoMIV | GCCGGC | 2 cut(s) | 342, 2411 |
| NmeAIII | GCCGAG | 2 cut(s) | 297, 391 |
| NmuCI | GTSAC | 7 cut(s) | 593, 1367, 1709, 2042, 2372, 2486, 2530 |
| NsiI | ATGCAT | 1 cut(s) | 2355 |
| NspI | RCATGY | 7 cut(s) | 1635, 2097, 2103, 2273, 2357, 2373, 3056 |
| NspV | TTCGAA | 2 cut(s) | 172, 284 |
| OliI | CACNNNNGTG | 2 cut(s) | 1374, 3110 |
| PaeI | GCATGC | 1 cut(s) | 2357 |
| PaeR7I | CTCGAG | 3 cut(s) | 957, 1151, 3294 |
| PciI | ACATGT | 3 cut(s) | 2093, 2269, 2369 |
| PciSI | GCTCTTC | 1 cut(s) | 2900 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 178 |
| PctI | GAATGC | 4 cut(s) | 307, 1250, 2023, 2467 |
| PdiI | GCCGGC | 2 cut(s) | 344, 2413 |
| PfeI | GAWTC | 9 cut(s) | 205, 994, 1057, 1687, 1811, 2033, 2579, 3485, 3683 |
| PfoI | TCCNGGA | 2 cut(s) | 200, 1018 |
| PleI | GAGTC | 8 cut(s) | 403, 486, 627, 780, 791, 1711, 3475, 3635 |
| PpsI | GAGTC | 8 cut(s) | 403, 486, 627, 780, 791, 1711, 3475, 3635 |
| Ppu21I | YACGTR | 1 cut(s) | 1066 |
| PpuMI | RGGWCCY | 2 cut(s) | 1162, 1397 |
| PscI | ACATGT | 3 cut(s) | 2093, 2269, 2369 |
| Psp124BI | GAGCTC | 2 cut(s) | 964, 2449 |
| Psp5II | RGGWCCY | 2 cut(s) | 1162, 1397 |
| Psp6I | CCWGG | 8 cut(s) | 200, 716, 1018, 1165, 1225, 1585, 3080, 3161 |
| PspFI | CCCAGC | 4 cut(s) | 222, 3024, 3076, 3123 |
| PspGI | CCWGG | 8 cut(s) | 200, 716, 1018, 1165, 1225, 1585, 3080, 3161 |
| PspPPI | RGGWCCY | 2 cut(s) | 1162, 1397 |
| PspXI | VCTCGAGB | 2 cut(s) | 957, 3294 |
| PstI | CTGCAG | 4 cut(s) | 988, 1659, 1919, 3523 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2243 |
| PsuI | RGATCY | 5 cut(s) | 236, 1681, 1972, 3157, 3184 |
| PvuII | CAGCTG | 2 cut(s) | 2208, 3374 |
| RsaI | GTAC | 9 cut(s) | 468, 1035, 2140, 2476, 2652, 3051, 3103, 3331, 3588 |
| RsaNI | GTAC | 9 cut(s) | 467, 1034, 2139, 2475, 2651, 3050, 3102, 3330, 3587 |
| SacI | GAGCTC | 2 cut(s) | 964, 2449 |
| SapI | GCTCTTC | 1 cut(s) | 2900 |
| SbfI | CCTGCAGG | 1 cut(s) | 1659 |
| SchI | GAGTC | 8 cut(s) | 403, 487, 628, 781, 791, 1711, 3476, 3635 |
| SdaI | CCTGCAGG | 1 cut(s) | 1659 |
| SduI | GDGCHC | 8 cut(s) | 231, 851, 958, 964, 1737, 1988, 2449, 3033 |
| SfcI | CTRYAG | 6 cut(s) | 526, 984, 1655, 1915, 2244, 3519 |
| Sfr274I | CTCGAG | 3 cut(s) | 957, 1151, 3294 |
| SfuI | TTCGAA | 2 cut(s) | 172, 284 |
| SinI | GGWCC | 8 cut(s) | 198, 903, 1162, 1229, 1397, 2275, 2836, 2935 |
| SlaI | CTCGAG | 3 cut(s) | 957, 1151, 3294 |
| SmlI | CTYRAG | 5 cut(s) | 910, 957, 1151, 3220, 3294 |
| SmoI | CTYRAG | 5 cut(s) | 910, 957, 1151, 3220, 3294 |
| SphI | GCATGC | 1 cut(s) | 2357 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1659 |
| SspMI | CTAG | 7 cut(s) | 801, 1530, 2451, 2598, 3192, 3245, 3590 |
| SstI | GAGCTC | 2 cut(s) | 964, 2449 |
| StyI | CCWWGG | 3 cut(s) | 2450, 3408, 3675 |
| TaiI | ACGT | 2 cut(s) | 1068, 2749 |
| TaqI | TCGA | 9 cut(s) | 172, 284, 923, 958, 1152, 2300, 3295, 3701, 3725 |
| TatI | WGTACW | 3 cut(s) | 1033, 2474, 3586 |
| TauI | GCSGC | 5 cut(s) | 254, 257, 811, 2364, 3566 |
| TfiI | GAWTC | 9 cut(s) | 205, 994, 1057, 1687, 1811, 2033, 2579, 3485, 3683 |
| TseFI | GTSAC | 7 cut(s) | 593, 1367, 1709, 2042, 2372, 2486, 2530 |
| Tsp45I | GTSAC | 7 cut(s) | 593, 1367, 1709, 2042, 2372, 2486, 2530 |
| TspDTI | ATGAA | 9 cut(s) | 36, 755, 806, 1113, 2184, 2460, 2736, 3477, 3696 |
| TspGWI | ACGGA | 2 cut(s) | 1633, 1903 |
| VneI | GTGCAC | 1 cut(s) | 1733 |
| VpaK11BI | GGWCC | 8 cut(s) | 198, 903, 1162, 1229, 1397, 2275, 2836, 2935 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1658 |
| XapI | RAATTY | 4 cut(s) | 825, 1575, 1862, 2782 |
| XceI | RCATGY | 7 cut(s) | 1635, 2097, 2103, 2273, 2357, 2373, 3056 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 724 |
| XhoI | CTCGAG | 3 cut(s) | 957, 1151, 3294 |
| XmaJI | CCTAGG | 1 cut(s) | 2450 |
| XmiI | GTMKAC | 1 cut(s) | 3150 |
| XspI | CTAG | 7 cut(s) | 801, 1530, 2451, 2598, 3192, 3245, 3590 |
| Zsp2I | ATGCAT | 1 cut(s) | 2355 |