Rmu_sc0013399.1_g000001

NF-X1-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013399.1
OG0011120
Physical Location & Seq
Forward (+)
1 .. 2662
2662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013399.1_g000001.1.cds

Sequence Viewer

Length: 2662 bp
gaagccactcgagaaggaggtcccaggaaagggaatgagtaaggatgatctttgccctcatatgtgtgtcttgcagtgccacccaggtccatgccctccttgtaaagcattcgcaccgccacggttatgcccttgtggaaagaaaacaataaccacaagatgctcagatcggacttctgttctgacttgtggcaatctttgtagtaagcttcttgattgtgggcgtcaccgctgtgagcggaagtgccatgtgggtcattgtgatccttgtcaggttccattcaatgcttcttgcttctgcctgaaaaagctggaggtcgttctttgtggagagatgatagtaaagggagaggtgaaagcagaagatggtgttttctcttgcagttctagttgtggaaagaagcttagctgtggcaatcatgtttgcagtgaaatttgtcatccaggcccttgtggagagtgcattttaatgccacggaatatcaagacatgccactgtgggaaaacaagcttgcaggaggaacgccagagttgtttggatccgattccaacttgttcacaaatatgtgacaagactctcccttgtggggtgcaccagtgtcaacaggtgtgccatactggtgattgccccccttgtttggttaaagtaacccaaaaatgtcgctgtgaatcaacttctcggaatgtggagtgctgtaaaacaacaatggagaatgagaaatttacttgtgataagccttgtggacggaagaagaattgtggaaggcaccgctgcagtgaaaggtgctgtcctctttctaattcaaataatcatctttcaggggattgggatcctcacttgtgctctatgccctgtgggaagaaattaaggtgcgggcagcattcttgtgaatcgctgtgtcacagtggccactgtcctccctgccttgatacaatctttactgacttgacatgtgcatgtgggagaacttcaatccctcctccattgccctgtggtacacctcctccatcatgtcagctcccttgttcagtgcctcagccttgtggacattcatcttctcacagctgccactttggagactgcccaccttgttcagtgcctgtagcaaaggagtgcatcggtggacatgtggtcctcaggaacattccttgtgggtcgagggacattaaatgtaacaagctctgtgggaagatgaggcaatgcggtatgcatgcttgcggcagaacatgtcacccaccgccttgtgagtgttcctcgtcagcagaagccggctcaaaatcttcttgtggacagaaatgtggagctcctaggagagattgcaggcatacatgtactgcaccttgtcacccttatgcttcctgtccagatgtgagatgtgatttccttgtcacaattacttgttcttgtggccggataatagcaaatgttccttgcgattctggtggcagcactgctagttttaatgctgatactgtgtttgaagcttccattatccaaaagttgccagtaccgcttcaaccagttgaagccaccaacaagaagatcccacttggacagaggaagctcacgtgtgatgatgaatgtgctaagttggagcggaaacgtgttcttgcagatgcttttgatatagttcctccaaatttggatgcactccattttggtgagactactgttatgtctgagttgctgtcagaccttttcaggcgtgatccaaaatgggtattatcggtggaggagagatgcaaacaattggttcttgggaagagcaaaggtgctacaagtggcctccgggtccatgttttttgtccaatgctgaaggaaaagagagatgtggttagggtgattgctgacaggtggaagcttgcagttcaagctgctggctgggagcccaagcgttttattgtggtacatgctacacctaaatccaaagtcccagccagggtgcttggggttaagggtaccaccacagtgaacgcatcccagcctccagcttttgatcatttagtagacatggatcccaggcttgtagtttcttttccagatcttcctagagatgcagatataagtgcattggtcttgaggtttggtggtgaatgtgagctagtctggttgaatgacaagaacgcgttggctgtattcaatgatcctgctcgagctgcaactgcaatgaggaggttggataatggtacactctatcatggggctattgctgttctgtctgcggcttcagctggttctaatgcttggggtggagggggaatagccaaggaaggagcctatacagcactgaagggtaatgcgtggaagaaggctgttattcgggagtcttcttggagagaagattcatggggtgaggaagagtggtctggtggttctgcagatgtgcaggcatctgtgtggaaaaaagaagctccaattgccgcctcattaaaccgctggagtgtactagatagtgaagtggctttgggatcatcttctgtatcccccacagtagaggactctggaaaacagactgctgctcgtttaatttccatggtggaatcaaatgcaagtggttcaacttcatcaaatgcaagcggttcgacttcagcagggcagattggaggaactattacagaaacatctgaagtggtagatgactgggagaaggcttatgaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009696 GO:0009697 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010188 GO:0010310 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010817 GO:0016053 GO:0016070 GO:0016999 GO:0017000 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032774 GO:0032787 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046189 GO:0046394 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0098542 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05165 map05165
Pfam Domains
Protein Families
K_trans R3H zf-NF-X1

Protein Analysis

886

Amino Acids

95.25

Weight (kDa)

8.26

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011120)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10170 AT1G10170 AT1G10170 AT1G10170
fragaria_vesca FvH4_5g17660
malus_domestica MD06G1232100.v1.1 MD14G1238900.v1.1
prunus_persica Prupe.5G236400_v2.0.a1
pyrus_communis pycom06g20620 pycom14g19990
rosa_chinensis RchiOBHm_Chr7g0178011
rosa_laevigata RLG00000005482
rosa_multiflora Rmu_sc0013399.1_g000001
rosa_roxburghii Rroxscaffold_3G00275290
rosa_rugosa Rorug06G0412300
rosa_samantha Rh7AG011800 Rh7BG011200 Rh7CG011800 Rh7DG011800
rosa_wichuraiana Rw7G000930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1959
AccB1I GGYRCC 2 cut(s) 766, 1959
AccBSI CCGCTC 2 cut(s) 239, 1598
AccI GTMKAC 1 cut(s) 2008
AccII CGCG 1 cut(s) 2127
AcoI YGGCCR 2 cut(s) 908, 1409
AcsI RAATTY 3 cut(s) 433, 720, 1640
AcuI CTGAAG 5 cut(s) 1836, 2212, 2310, 2572, 2647
AcvI CACGTG 1 cut(s) 1570
AcyI GRCGYC 1 cut(s) 224
AfaI GTAC 7 cut(s) 998, 1334, 1510, 1909, 1961, 2189, 2446
AfiI CCNNNNNNNGG 5 cut(s) 29, 30, 587, 638, 1940
AflIII ACRYGT 7 cut(s) 951, 1127, 1227, 1329, 1569, 1604, 2125
AhdI GACNNNNNGTC 1 cut(s) 1131
AjnI CCWGG 5 cut(s) 23, 83, 443, 1938, 2019
AleI CACNNNNGTG 2 cut(s) 232, 1968
Alw21I GWGCWC 3 cut(s) 595, 846, 1307
Alw26I GTCTC 2 cut(s) 1072, 1659
Alw44I GTGCAC 1 cut(s) 591
AlwNI CAGNNNCTG 1 cut(s) 1101
Ama87I CYCGRG 2 cut(s) 9, 2152
AoxI GGCC 4 cut(s) 446, 908, 1409, 1784
ApaLI GTGCAC 1 cut(s) 591
ApeKI GCWGC 7 cut(s) 772, 878, 1066, 1447, 1875, 2157, 2517
ApoI RAATTY 3 cut(s) 433, 720, 1640
Asp718I GGTACC 1 cut(s) 1959
AspA2I CCTAGG 1 cut(s) 1308
AspS9I GGNCC 5 cut(s) 20, 87, 447, 1133, 1793
AsuC2I CCSGG 1 cut(s) 1791
AsuHPI GGTGA 9 cut(s) 219, 365, 633, 1224, 1338, 1674, 1853, 2103, 2364
AvaI CYCGRG 2 cut(s) 9, 2152
AvaII GGWCC 4 cut(s) 20, 87, 1133, 1793
AvrII CCTAGG 1 cut(s) 1308
AxyI CCTNAGG 1 cut(s) 1137
BaeGI GKGCMC 1 cut(s) 595
BalI TGGCCA 1 cut(s) 910
BamHI GGATCC 3 cut(s) 539, 830, 2015
BanI GGYRCC 2 cut(s) 766, 1959
BanII GRGCYC 2 cut(s) 1307, 1891
BbrPI CACGTG 1 cut(s) 1570
BbsI GAAGAC 1 cut(s) 2320
Bbv12I GWGCWC 3 cut(s) 595, 846, 1307
BbvCI CCTCAGC 1 cut(s) 1036
BbvI GCAGC 7 cut(s) 759, 890, 1053, 1459, 1862, 2144, 2504
BccI CCATC 2 cut(s) 360, 1016
BcgI CGANNNNNNTGC 2 cut(s) 2563, 2597
BciT130I CCWGG 5 cut(s) 25, 85, 445, 1940, 2021
BciVI GTATCC 1 cut(s) 2492
BclI TGATCA 1 cut(s) 1997
BcnI CCSGG 1 cut(s) 1791
BcoDI GTCTC 2 cut(s) 1072, 1659
BfaI CTAG 6 cut(s) 388, 1309, 1456, 2050, 2103, 2448
BfmI CTRYAG 3 cut(s) 773, 1102, 2377
BfuI GTATCC 1 cut(s) 2492
BglII AGATCT 1 cut(s) 2042
BlnI CCTAGG 1 cut(s) 1308
BlpI GCTNAGC 1 cut(s) 405
Bme1390I CCNGG 6 cut(s) 25, 85, 445, 1791, 1940, 2021
Bme18I GGWCC 4 cut(s) 20, 87, 1133, 1793
BmeRI GACNNNNNGTC 1 cut(s) 1131
BmeT110I CYCGRG 2 cut(s) 9, 2152
BmgT120I GGNCC 5 cut(s) 20, 87, 447, 1133, 1793
BmrFI CCNGG 6 cut(s) 25, 85, 445, 1791, 1940, 2021
BmrI ACTGGG 1 cut(s) 2651
BmsI GCATC 8 cut(s) 150, 1126, 1607, 1637, 1731, 1986, 2045, 2400
BmuI ACTGGG 1 cut(s) 2651
BpiI GAAGAC 1 cut(s) 2320
BplI GAGNNNNNCTC 2 cut(s) 1239, 1271
BpmI CTGGAG 3 cut(s) 333, 1972, 2459
Bpu10I CCTNAGC 1 cut(s) 1036
Bpu1102I GCTNAGC 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 2099
BpuMI CCSGG 1 cut(s) 1791
BsaAI YACGTR 1 cut(s) 1570
BsaBI GATNNNNATC 1 cut(s) 829
BsaHI GRCGYC 1 cut(s) 224
BsaJI CCNNGG 9 cut(s) 23, 83, 120, 474, 1308, 1939, 2019, 2266, 2533
BsaXI ACNNNNNCTCC 2 cut(s) 989, 1019
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 30, 587, 638, 1940
Bse118I RCCGGY 1 cut(s) 1269
Bse1I ACTGG 5 cut(s) 596, 623, 1506, 1521, 2646
Bse21I CCTNAGG 1 cut(s) 1137
Bse3DI GCAATG 3 cut(s) 984, 1206, 2173
Bse8I GATNNNNATC 1 cut(s) 829
BseBI CCWGG 5 cut(s) 25, 85, 445, 1940, 2021
BseDI CCNNGG 9 cut(s) 23, 83, 120, 474, 1308, 1939, 2019, 2266, 2533
BseGI GGATG 4 cut(s) 50, 440, 1652, 1977
BseJI GATNNNNATC 1 cut(s) 829
BseLI CCNNNNNNNGG 5 cut(s) 29, 30, 587, 638, 1940
BseMI GCAATG 3 cut(s) 984, 1206, 2173
BseMII CTCAG 4 cut(s) 178, 1050, 1151, 1672
BseNI ACTGG 5 cut(s) 596, 623, 1506, 1521, 2646
BseRI GAGGAG 4 cut(s) 970, 994, 1749, 2186
BseSI GKGCMC 1 cut(s) 595
BseXI GCAGC 7 cut(s) 759, 890, 1053, 1459, 1862, 2144, 2504
BseYI CCCAGC 3 cut(s) 1882, 1934, 1981
BsgI GTGCAG 2 cut(s) 1321, 2406
Bsh1236I CGCG 1 cut(s) 2127
BshFI GGCC 4 cut(s) 448, 910, 1411, 1786
BshNI GGYRCC 2 cut(s) 766, 1959
BsiHKAI GWGCWC 3 cut(s) 595, 846, 1307
BsiHKCI CYCGRG 2 cut(s) 9, 2152
BsiSI CCGG 3 cut(s) 1270, 1412, 1790
BslFI GGGAC 3 cut(s) 6, 1176, 1917
BslI CCNNNNNNNGG 5 cut(s) 29, 30, 587, 638, 1940
BsmAI GTCTC 2 cut(s) 1072, 1659
BsmFI GGGAC 3 cut(s) 6, 1176, 1917
BsmI GAATGC 2 cut(s) 108, 881
BsnI GGCC 4 cut(s) 448, 910, 1411, 1786
BsoBI CYCGRG 2 cut(s) 9, 2152
Bsp1286I GDGCHC 4 cut(s) 595, 846, 1307, 1891
Bsp1720I GCTNAGC 1 cut(s) 405
Bsp19I CCATGG 1 cut(s) 2533
BspANI GGCC 4 cut(s) 448, 910, 1411, 1786
BspCNI CTCAG 4 cut(s) 177, 1049, 1150, 1673
BspFNI CGCG 1 cut(s) 2127
BspMAI CTGCAG 2 cut(s) 777, 2381
BspQI GCTCTTC 1 cut(s) 1758
BspT107I GGYRCC 2 cut(s) 766, 1959
BsrBI CCGCTC 2 cut(s) 239, 1598
BsrDI GCAATG 3 cut(s) 984, 1206, 2173
BsrFI RCCGGY 1 cut(s) 1269
BsrI ACTGG 5 cut(s) 596, 623, 1506, 1521, 2646
BssAI RCCGGY 1 cut(s) 1269
BssECI CCNNGG 9 cut(s) 23, 83, 120, 474, 1308, 1939, 2019, 2266, 2533
BssNI GRCGYC 1 cut(s) 224
BssT1I CCWWGG 3 cut(s) 1308, 2266, 2533
Bst2UI CCWGG 5 cut(s) 25, 85, 445, 1940, 2021
Bst4CI ACNGT 8 cut(s) 124, 498, 906, 915, 1475, 1673, 1970, 2492
Bst6I CTCTTC 2 cut(s) 1758, 2353
BstACI GRCGYC 1 cut(s) 224
BstBAI YACGTR 1 cut(s) 1570
BstDEI CTNAG 6 cut(s) 164, 405, 1036, 1137, 1588, 1681
BstDSI CCRYGG 3 cut(s) 120, 474, 2533
BstF5I GGATG 4 cut(s) 50, 440, 1652, 1977
BstFNI CGCG 1 cut(s) 2127
BstMAI GTCTC 2 cut(s) 1072, 1659
BstMWI GCNNNNNNNGC 7 cut(s) 1511, 1872, 2157, 2163, 2229, 2283, 2418
BstNI CCWGG 5 cut(s) 25, 85, 445, 1940, 2021
BstNSI RCATGY 8 cut(s) 493, 955, 961, 1131, 1215, 1231, 1333, 1914
BstSCI CCNGG 6 cut(s) 23, 83, 443, 1789, 1938, 2019
BstSFI CTRYAG 3 cut(s) 773, 1102, 2377
BstSLI GKGCMC 1 cut(s) 595
BstUI CGCG 1 cut(s) 2127
BstV1I GCAGC 7 cut(s) 759, 890, 1053, 1459, 1862, 2144, 2504
BstV2I GAAGAC 1 cut(s) 2320
BstX2I RGATCY 5 cut(s) 539, 830, 1543, 2015, 2042
BstYI RGATCY 5 cut(s) 539, 830, 1543, 2015, 2042
Bsu36I CCTNAGG 1 cut(s) 1137
BsuI GTATCC 1 cut(s) 2492
BsuRI GGCC 4 cut(s) 448, 910, 1411, 1786
BtgI CCRYGG 3 cut(s) 120, 474, 2533
BtsCI GGATG 4 cut(s) 50, 440, 1652, 1977
BtsI GCAGTG 4 cut(s) 81, 434, 782, 1450
CaiI CAGNNNCTG 1 cut(s) 1101
Cfr10I RCCGGY 1 cut(s) 1269
Cfr13I GGNCC 5 cut(s) 20, 87, 447, 1133, 1793
CseI GACGC 1 cut(s) 213
Csp6I GTAC 7 cut(s) 997, 1333, 1509, 1908, 1960, 2188, 2445
CspCI CAANNNNNGTGG 2 cut(s) 1166, 1201
CviQI GTAC 7 cut(s) 997, 1333, 1509, 1908, 1960, 2188, 2445
DdeI CTNAG 6 cut(s) 164, 405, 1036, 1137, 1588, 1681
DriI GACNNNNNGTC 1 cut(s) 1131
EaeI YGGCCR 2 cut(s) 908, 1409
Eam1104I CTCTTC 2 cut(s) 1758, 2353
Eam1105I GACNNNNNGTC 1 cut(s) 1131
EarI CTCTTC 2 cut(s) 1758, 2353
Ecl136II GAGCTC 1 cut(s) 1305
Eco130I CCWWGG 3 cut(s) 1308, 2266, 2533
Eco24I GRGCYC 2 cut(s) 1307, 1891
Eco47I GGWCC 4 cut(s) 20, 87, 1133, 1793
Eco53kI GAGCTC 1 cut(s) 1305
Eco57I CTGAAG 5 cut(s) 1836, 2212, 2310, 2572, 2647
Eco72I CACGTG 1 cut(s) 1570
Eco81I CCTNAGG 1 cut(s) 1137
Eco88I CYCGRG 2 cut(s) 9, 2152
EcoICRI GAGCTC 1 cut(s) 1305
EcoO109I RGGNCCY 2 cut(s) 20, 447
EcoRII CCWGG 5 cut(s) 23, 83, 443, 1938, 2019
EcoT14I CCWWGG 3 cut(s) 1308, 2266, 2533
EcoT22I ATGCAT 1 cut(s) 1213
EcoT38I GRGCYC 2 cut(s) 1307, 1891
ErhI CCWWGG 3 cut(s) 1308, 2266, 2533
FaqI GGGAC 3 cut(s) 6, 1176, 1917
FauI CCCGC 1 cut(s) 867
FauNDI CATATG 1 cut(s) 61
FbaI TGATCA 1 cut(s) 1997
FblI GTMKAC 1 cut(s) 2008
FokI GGATG 4 cut(s) 57, 427, 1659, 1964
FriOI GRGCYC 2 cut(s) 1307, 1891
FspBI CTAG 6 cut(s) 388, 1309, 1456, 2050, 2103, 2448
GsaI CCCAGC 3 cut(s) 1886, 1938, 1985
GsuI CTGGAG 3 cut(s) 333, 1972, 2459
HaeIII GGCC 4 cut(s) 448, 910, 1411, 1786
HapII CCGG 3 cut(s) 1270, 1412, 1790
HgaI GACGC 1 cut(s) 213
Hin1I GRCGYC 1 cut(s) 224
HincII GTYRAC 1 cut(s) 603
HindII GTYRAC 1 cut(s) 603
HindIII AAGCTT 5 cut(s) 207, 402, 509, 1483, 1860
HinfI GANTC 9 cut(s) 545, 575, 669, 891, 1437, 2325, 2343, 2499, 2541
HpaII CCGG 3 cut(s) 1270, 1412, 1790
HphI GGTGA 9 cut(s) 219, 365, 633, 1224, 1338, 1674, 1853, 2103, 2364
Hpy188I TCNGA 8 cut(s) 167, 172, 184, 544, 682, 1682, 1694, 2627
Hpy188III TCNNGA 9 cut(s) 11, 213, 485, 1139, 1365, 2040, 2078, 2322, 2503
HpyAV CCTTC 7 cut(s) 8, 757, 1811, 2265, 2285, 2303, 2642
HpyCH4III ACNGT 8 cut(s) 124, 498, 906, 915, 1475, 1673, 1970, 2492
HpyCH4IV ACGT 2 cut(s) 1569, 1604
HpyF10VI GCNNNNNNNGC 7 cut(s) 1511, 1872, 2157, 2163, 2229, 2283, 2418
HpyF3I CTNAG 6 cut(s) 164, 405, 1036, 1137, 1588, 1681
HpySE526I ACGT 2 cut(s) 1569, 1604
Hsp92I GRCGYC 1 cut(s) 224
KpnI GGTACC 1 cut(s) 1963
KroI GCCGGC 1 cut(s) 1269
KroNI GCCGGC 1 cut(s) 1271
Ksp22I TGATCA 1 cut(s) 1997
LguI GCTCTTC 1 cut(s) 1758
LmnI GCTCC 7 cut(s) 1024, 1302, 1310, 1595, 1886, 2274, 2417
Lsp1109I GCAGC 7 cut(s) 759, 890, 1053, 1459, 1862, 2144, 2504
LweI GCATC 8 cut(s) 150, 1126, 1607, 1637, 1731, 1986, 2045, 2400
MaeI CTAG 6 cut(s) 388, 1309, 1456, 2050, 2103, 2448
MaeII ACGT 2 cut(s) 1569, 1604
MaeIII GTNAC 8 cut(s) 225, 567, 647, 900, 1173, 1230, 1344, 1388
MbiI CCGCTC 2 cut(s) 239, 1598
MfeI CAATTG 2 cut(s) 1749, 2416
MflI RGATCY 5 cut(s) 539, 830, 1543, 2015, 2042
MhlI GDGCHC 4 cut(s) 595, 846, 1307, 1891
MlsI TGGCCA 1 cut(s) 910
MluI ACGCGT 1 cut(s) 2125
MluNI TGGCCA 1 cut(s) 910
MlyI GAGTC 3 cut(s) 569, 2334, 2493
MmeI TCCRAC 3 cut(s) 573, 1573, 2158
Mox20I TGGCCA 1 cut(s) 910
Mph1103I ATGCAT 1 cut(s) 1213
MroNI GCCGGC 1 cut(s) 1269
MscI TGGCCA 1 cut(s) 910
MseI TTAA 8 cut(s) 468, 643, 867, 1168, 1462, 1954, 2430, 2526
Msp20I TGGCCA 1 cut(s) 910
MspA1I CMGCKG 5 cut(s) 232, 772, 1066, 2232, 2437
MspI CCGG 3 cut(s) 1270, 1412, 1790
MspR9I CCNGG 6 cut(s) 25, 85, 445, 1791, 1940, 2021
MunI CAATTG 2 cut(s) 1749, 2416
Mva1269I GAATGC 2 cut(s) 108, 881
MvaI CCWGG 5 cut(s) 25, 85, 445, 1940, 2021
MvnI CGCG 1 cut(s) 2127
MwoI GCNNNNNNNGC 7 cut(s) 1511, 1872, 2157, 2163, 2229, 2283, 2418
NaeI GCCGGC 1 cut(s) 1271
NciI CCSGG 1 cut(s) 1791
NcoI CCATGG 1 cut(s) 2533
NdeI CATATG 1 cut(s) 61
NgoMIV GCCGGC 1 cut(s) 1269
NmuCI GTSAC 6 cut(s) 225, 567, 900, 1230, 1344, 1388
NsiI ATGCAT 1 cut(s) 1213
NspI RCATGY 8 cut(s) 493, 955, 961, 1131, 1215, 1231, 1333, 1914
OliI CACNNNNGTG 2 cut(s) 232, 1968
PaeI GCATGC 1 cut(s) 1215
PaeR7I CTCGAG 2 cut(s) 9, 2152
PciI ACATGT 4 cut(s) 951, 1127, 1227, 1329
PciSI GCTCTTC 1 cut(s) 1758
PctI GAATGC 2 cut(s) 108, 881
PdiI GCCGGC 1 cut(s) 1271
PfeI GAWTC 6 cut(s) 545, 669, 891, 1437, 2343, 2541
PleI GAGTC 3 cut(s) 569, 2333, 2493
PmaCI CACGTG 1 cut(s) 1570
PmlI CACGTG 1 cut(s) 1570
PpsI GAGTC 3 cut(s) 569, 2333, 2493
Ppu21I YACGTR 1 cut(s) 1570
PpuMI RGGWCCY 1 cut(s) 20
PscI ACATGT 4 cut(s) 951, 1127, 1227, 1329
Psp124BI GAGCTC 1 cut(s) 1307
Psp5II RGGWCCY 1 cut(s) 20
Psp6I CCWGG 5 cut(s) 23, 83, 443, 1938, 2019
PspCI CACGTG 1 cut(s) 1570
PspFI CCCAGC 3 cut(s) 1882, 1934, 1981
PspGI CCWGG 5 cut(s) 23, 83, 443, 1938, 2019
PspPI GGNCC 5 cut(s) 20, 87, 447, 1133, 1793
PspPPI RGGWCCY 1 cut(s) 20
PspXI VCTCGAGB 1 cut(s) 2152
PstI CTGCAG 2 cut(s) 777, 2381
PstNI CAGNNNCTG 1 cut(s) 1101
PsuI RGATCY 5 cut(s) 539, 830, 1543, 2015, 2042
PvuII CAGCTG 2 cut(s) 1066, 2232
RsaI GTAC 7 cut(s) 998, 1334, 1510, 1909, 1961, 2189, 2446
RsaNI GTAC 7 cut(s) 997, 1333, 1509, 1908, 1960, 2188, 2445
SacI GAGCTC 1 cut(s) 1307
SapI GCTCTTC 1 cut(s) 1758
SaqAI TTAA 8 cut(s) 468, 643, 867, 1168, 1462, 1954, 2430, 2526
Sau96I GGNCC 5 cut(s) 20, 87, 447, 1133, 1793
SchI GAGTC 3 cut(s) 569, 2334, 2493
ScrFI CCNGG 6 cut(s) 25, 85, 445, 1791, 1940, 2021
SduI GDGCHC 4 cut(s) 595, 846, 1307, 1891
SfaNI GCATC 8 cut(s) 150, 1126, 1607, 1637, 1731, 1986, 2045, 2400
SfcI CTRYAG 3 cut(s) 773, 1102, 2377
Sfr274I CTCGAG 2 cut(s) 9, 2152
SinI GGWCC 4 cut(s) 20, 87, 1133, 1793
SlaI CTCGAG 2 cut(s) 9, 2152
SmlI CTYRAG 3 cut(s) 9, 2078, 2152
SmoI CTYRAG 3 cut(s) 9, 2078, 2152
SphI GCATGC 1 cut(s) 1215
SspMI CTAG 6 cut(s) 388, 1309, 1456, 2050, 2103, 2448
SstI GAGCTC 1 cut(s) 1307
StyD4I CCNGG 6 cut(s) 23, 83, 443, 1789, 1938, 2019
StyI CCWWGG 3 cut(s) 1308, 2266, 2533
TaaI ACNGT 8 cut(s) 124, 498, 906, 915, 1475, 1673, 1970, 2492
TaiI ACGT 2 cut(s) 1572, 1607
TaqI TCGA 4 cut(s) 10, 1158, 2153, 2583
TatI WGTACW 2 cut(s) 1332, 2444
TauI GCSGC 3 cut(s) 1222, 2226, 2424
TfiI GAWTC 6 cut(s) 545, 669, 891, 1437, 2343, 2541
Tru1I TTAA 8 cut(s) 468, 643, 867, 1168, 1462, 1954, 2430, 2526
Tru9I TTAA 8 cut(s) 468, 643, 867, 1168, 1462, 1954, 2430, 2526
TseFI GTSAC 6 cut(s) 225, 567, 900, 1230, 1344, 1388
TseI GCWGC 7 cut(s) 772, 878, 1066, 1447, 1875, 2157, 2517
Tsp45I GTSAC 6 cut(s) 225, 567, 900, 1230, 1344, 1388
TspDTI ATGAA 4 cut(s) 1042, 1594, 2335, 2554
TspGWI ACGGA 2 cut(s) 491, 761
VneI GTGCAC 1 cut(s) 591
VpaK11BI GGWCC 4 cut(s) 20, 87, 1133, 1793
XapI RAATTY 3 cut(s) 433, 720, 1640
XceI RCATGY 8 cut(s) 493, 955, 961, 1131, 1215, 1231, 1333, 1914
XhoI CTCGAG 2 cut(s) 9, 2152
XmaJI CCTAGG 1 cut(s) 1308
XmiI GTMKAC 1 cut(s) 2008
XspI CTAG 6 cut(s) 388, 1309, 1456, 2050, 2103, 2448
Zsp2I ATGCAT 1 cut(s) 1213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.