Rorug06G0412300

NF-X1-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011120
Physical Location & Seq
Reverse (-)
55380880 .. 55384932
4053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0412300.1

Sequence Viewer

Length: 2343 bp
ATGGCGATCATCCTCCTTCACATTGTAGCCTTCTTCGTTATGACTTTCAACGTTGCAAATTGTCAATCCTTTATCGGCGTAAACTACGGTCAAGTCGCCGACAACCTCCCGCCGCCGTCATCCACCGCAAAGCTACTCCAGTCCACCTCAATCCAAAAGGTCCGGCTCTACGGATCCGACCCGGCCATAATCAAAGCGCTAGCCAACACCGGCATCGGAATCGTCATCGGAGCGGCCAACGGCGACATCCCTGCCCTTGCGTCCGACCCGAATTACGCGAGCAACTGGGTCAGCACCAACGTTCTTGCCTTCTACCCGGCAAGCAACATCATCCTCATAACGGTCGGCAACGAGGTCCTGACCTCCGGCGACCAGGGACTGGTGAGTCAACTAGTTCCGGCGATGCAAAATGTCCAAAACGCCCTCAACTCCGCATCTTTGGGCGGGAAAATTAAGGTCTCCACTGTCCATGCCATGTCGGTGCTCAAGCAATCTGAGCCGCCGTCCTCCGGTAGCTTTGATCCTAGTTTTGGTGACGTCATGAAGGCGTTGCTGGCGTTCTGTAGCGCCACCGGTTCGCCTTTTGCAATCAACCCGTACCCGTATTTTGCGTACCGGAGTGACTCCCGACCCGAGACCCTGGCTTTCTGCCTCTTCCAACCCAACCAGGGCCGGTTCGACTCCAACACAAACATCAAGTACATGAACATGTTCGACGCACAGGTGGATGCAGTAAAATCTGCATTGAACTCCATGGGGCACGGTAATGTGGAAATTGTGGTTGCGGAGACTGGCTGGCCGTACAAAGGAGACGACAATGAGGTCGGTCCGAGTGTCGAAAATGCCAAAGCCTATAACGGTAATCTGATTGCGCATCTTCGATCAATGGTTGGGACTCCATTAATGCCAGGGAAGTCGGTGGACACTTACCTCTTTGCACTCTATGATGAGAACTTGAAACCCGGCCCTGGTTCCGAGAGAGCTTTCGGCCTCTTCAAGCCTGACCTTACCATGACTTATGACGTTGGTCTCTCCAAGAGTGCTAGCCAGACCCCCACCACGCCAACTGTGCCCAAGACGCCGACCGTGCCCACCACACCCAAGACACCCTCTGCAGTAGTGCCCAAAACGCCAACAAACCCATCTACTGCGCCGAATCCAAATAAAGGGGTGTGGTGTTTGCCTAAGAAAGGAGTGTCGGAGACTCAGTTGCAGGCTAACATAGATTATGTTTGTGGACATGGTTTTGATTGTAGTCCAATTCAACCGGGCGGGGCTTGTTTTGAACCAAACACGGTGGCTTCCCACGCTGCTTATGCCATGAATATTCTGTATCAAACCGCCGGTCACGATGCTCAGAACTGCGATTTCTCGCAAACTGCTACACTATCCTCGAACAACCCTATGGTCCGAGTATTTCTCGCAAACTGTAAGGGACGCAGAGGCAGAGAGACACCAACACCCAAAAGCAAGAACAAGAAGGGAAACACAATGGCAACGAGAGAAAGGGAGAGAGATCTTGAGCTCCTGATTCGAGAGAGGGAGAGGGATCTAGAGCTTCTTATTCCGGTTTCGAACCCCGAAAATGCACCTCCCAAATCCTCCAACTCCTCGCCGGAATCTCCAGCTACCTCCACAACATCAACATCATCTCATTCCCATCATACCTCCGGCCGCGAGGCATTTTCAAAAGTCATTCAGAGCTGGGCTTCCAAGAAGTTTATGACAGGATGTGTCATTCTTCTTCCAATAGCCATTACATTCTACGTGACGTGGATTTTCATTCGTTTTGTGGATGGTTTCTTCTCCCCAATTTATAATCATCTAGGAATCAATGTTTTTGGTCTTGGATTTGCCACCTCTCTCATCTTCATCTTCTTAATTGGTGTTTTCATGCAATCATGGTTGGGAACTTCAGTTCTAACCGTATGGGAGTGGTTTATTAAGAAAATGCCGCTTATAAGCTATATATATACTGCCTCAAAGCAAATTAGTACAGCAATATCACCAGATCAGACCTCTAAGGCGTTCAAGGAAGTGGCTATCATAAGGCATCCAAGAATCGGAGAATATGTATTGGGATTTATTACAAATACAGTTATTCTTAATCGAAGGAGTGTAGGAGAAGAACTCTGCTGTGTTTATATACCTACCAACCACCTTTATCTTGGAGACATTGTTCTGATCAGTCCCAAAGATGTTATGAGGCCTAATCTGTCAGTTCGAGAAGGAATTGAAATTGTTATTTCCGGAGGTATGTCAATACCCCAATTGTTAACTACAATAGAACCACCAAACATTCCACCAGAAAGAGTTCCCCACTTTGAAACCCCAAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009696 GO:0009697 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010188 GO:0010310 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010817 GO:0016053 GO:0016070 GO:0016999 GO:0017000 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032774 GO:0032787 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046189 GO:0046394 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0098542 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05165 map05165
Pfam Domains
Protein Families
K_trans R3H zf-NF-X1

Protein Analysis

780

Amino Acids

84.62

Weight (kDa)

8.12

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 25 - 342 1.9e-81 Glycosyl hydrolases family 17
X8 PF07983 392 - 462 2.1e-20 X8 domain
DUF502 PF04367 621 - 720 7.5e-25 Protein of unknown function (DUF502)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011120)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10170 AT1G10170 AT1G10170 AT1G10170
fragaria_vesca FvH4_5g17660
malus_domestica MD06G1232100.v1.1 MD14G1238900.v1.1
prunus_persica Prupe.5G236400_v2.0.a1
pyrus_communis pycom06g20620 pycom14g19990
rosa_chinensis RchiOBHm_Chr7g0178011
rosa_laevigata RLG00000005482
rosa_multiflora Rmu_sc0013399.1_g000001
rosa_roxburghii Rroxscaffold_3G00275290
rosa_rugosa Rorug06G0412300
rosa_samantha Rh7AG011800 Rh7BG011200 Rh7CG011800 Rh7DG011800
rosa_wichuraiana Rw7G000930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1818, 1961
AasI GACNNNNNNGTC 2 cut(s) 384, 821
AatII GACGTC 1 cut(s) 540
Acc16I TGCGCA 1 cut(s) 873
AccB7I CCANNNNNTGG 1 cut(s) 379
AccBSI CCGCTC 1 cut(s) 233
AccII CGCG 2 cut(s) 278, 1677
AccIII TCCGGA 1 cut(s) 2249
AclI AACGTT 2 cut(s) 51, 300
AclWI GGATC 4 cut(s) 168, 181, 515, 1557
AcoI YGGCCR 4 cut(s) 183, 234, 797, 1672
AcuI CTGAAG 1 cut(s) 1899
AcyI GRCGYC 2 cut(s) 537, 1079
AfaI GTAC 5 cut(s) 599, 614, 701, 803, 1996
AfeI AGCGCT 1 cut(s) 198
AflIII ACRYGT 1 cut(s) 708
AgeI ACCGGT 1 cut(s) 572
AhlI ACTAGT 1 cut(s) 391
AjiI CACGTC 1 cut(s) 1773
AjnI CCWGG 5 cut(s) 372, 639, 666, 907, 967
AloI GAACNNNNNNTCC 4 cut(s) 1902, 1934, 2163, 2195
AluBI AGCT 8 cut(s) 133, 516, 983, 1525, 1558, 1628, 1704, 1965
AluI AGCT 8 cut(s) 133, 516, 983, 1525, 1558, 1628, 1704, 1965
Alw21I GWGCWC 2 cut(s) 486, 1527
Alw26I GTCTC 8 cut(s) 463, 629, 782, 804, 1034, 1196, 1445, 2166
AlwI GGATC 4 cut(s) 168, 181, 515, 1557
AlwNI CAGNNNCTG 1 cut(s) 379
Ama87I CYCGRG 1 cut(s) 632
Aor13HI TCCGGA 1 cut(s) 2249
Aor51HI AGCGCT 1 cut(s) 198
AoxI GGCC 8 cut(s) 183, 234, 670, 797, 964, 988, 1672, 2207
ApeKI GCWGC 1 cut(s) 1310
ArsI GACNNNNNNTTYG 2 cut(s) 1330, 1362
AseI ATTAAT 1 cut(s) 902
AsiGI ACCGGT 1 cut(s) 572
Asp700I GAANNNNTTC 2 cut(s) 710, 2313
AspLEI GCGC 4 cut(s) 199, 569, 874, 1153
AspS9I GGNCC 6 cut(s) 160, 355, 670, 827, 965, 1408
AsuC2I CCSGG 4 cut(s) 182, 317, 963, 1269
AsuHPI GGTGA 3 cut(s) 394, 545, 1998
AsuII TTCGAA 1 cut(s) 1574
AsuNHI GCTAGC 2 cut(s) 199, 1043
AvaI CYCGRG 1 cut(s) 632
AvaII GGWCC 4 cut(s) 160, 355, 827, 1408
BaeGI GKGCMC 4 cut(s) 762, 1074, 1092, 1125
BamHI GGATCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 1527
Bbv12I GWGCWC 2 cut(s) 486, 1527
BbvI GCAGC 1 cut(s) 1297
BccI CCATC 3 cut(s) 1150, 1668, 1790
BceAI ACGGC 4 cut(s) 100, 256, 487, 784
BcgI CGANNNNNNTGC 4 cut(s) 202, 233, 236, 267
BciT130I CCWGG 5 cut(s) 374, 641, 668, 909, 969
BclI TGATCA 1 cut(s) 2184
BcnI CCSGG 4 cut(s) 182, 317, 963, 1269
BcoDI GTCTC 8 cut(s) 463, 629, 782, 804, 1034, 1196, 1445, 2166
BcuI ACTAGT 1 cut(s) 391
BfaI CTAG 6 cut(s) 200, 392, 525, 1044, 1553, 1826
BfmI CTRYAG 2 cut(s) 562, 1113
BfoI RGCGCY 2 cut(s) 200, 570
BglII AGATCT 1 cut(s) 1516
BisI GCNGC 6 cut(s) 113, 234, 500, 1311, 1675, 1955
BlsI GCNGC 6 cut(s) 114, 235, 501, 1312, 1676, 1956
Bme1390I CCNGG 9 cut(s) 182, 317, 374, 641, 668, 909, 963, 969, 1269
Bme18I GGWCC 4 cut(s) 160, 355, 827, 1408
BmeT110I CYCGRG 1 cut(s) 632
BmgBI CACGTC 1 cut(s) 1773
BmgT120I GGNCC 6 cut(s) 160, 355, 670, 827, 965, 1408
BmiI GGNNCC 2 cut(s) 175, 973
BmrFI CCNGG 9 cut(s) 182, 317, 374, 641, 668, 909, 963, 969, 1269
BmrI ACTGGG 1 cut(s) 295
BmsI GCATC 7 cut(s) 222, 393, 443, 718, 883, 1342, 2062
BmtI GCTAGC 2 cut(s) 203, 1047
BmuI ACTGGG 1 cut(s) 295
BoxI GACNNNNGTC 1 cut(s) 1026
BplI GAGNNNNNCTC 4 cut(s) 1404, 1436, 2115, 2147
BpmI CTGGAG 2 cut(s) 122, 1608
Bpu14I TTCGAA 1 cut(s) 1574
BpuEI CTTGAG 2 cut(s) 470, 1541
BpuMI CCSGG 4 cut(s) 182, 317, 963, 1269
BsaAI YACGTR 1 cut(s) 1768
BsaHI GRCGYC 2 cut(s) 537, 1079
BsaI GGTCTC 3 cut(s) 463, 629, 1034
BsaJI CCNNGG 6 cut(s) 373, 639, 667, 753, 908, 967
BsaWI WCCGGW 5 cut(s) 509, 572, 615, 1567, 2249
BsaXI ACNNNNNCTCC 6 cut(s) 1193, 1223, 2058, 2088, 2163, 2193
Bse118I RCCGGY 4 cut(s) 209, 572, 672, 1343
Bse1I ACTGG 4 cut(s) 139, 290, 384, 796
BseAI TCCGGA 1 cut(s) 2249
BseBI CCWGG 5 cut(s) 374, 641, 668, 909, 969
BseDI CCNNGG 6 cut(s) 373, 639, 667, 753, 908, 967
BseGI GGATG 8 cut(s) 9, 119, 246, 330, 733, 1736, 1801, 2053
BseMII CTCAG 3 cut(s) 486, 1220, 1370
BseNI ACTGG 4 cut(s) 139, 290, 384, 796
BseRI GAGGAG 1 cut(s) 1600
BseSI GKGCMC 4 cut(s) 762, 1074, 1092, 1125
BseX3I CGGCCG 1 cut(s) 1672
BseXI GCAGC 1 cut(s) 1297
BseYI CCCAGC 1 cut(s) 1704
Bsh1236I CGCG 2 cut(s) 278, 1677
Bsh1285I CGRYCG 3 cut(s) 345, 1086, 1675
BshFI GGCC 8 cut(s) 185, 236, 672, 799, 966, 990, 1674, 2209
BshTI ACCGGT 1 cut(s) 572
BsiEI CGRYCG 3 cut(s) 345, 1086, 1675
BsiHKAI GWGCWC 2 cut(s) 486, 1527
BsiHKCI CYCGRG 1 cut(s) 632
BslFI GGGAC 4 cut(s) 390, 907, 1449, 2175
BsmAI GTCTC 8 cut(s) 463, 629, 782, 804, 1034, 1196, 1445, 2166
BsmBI CGTCTC 1 cut(s) 804
BsmFI GGGAC 4 cut(s) 390, 907, 1449, 2175
BsnI GGCC 8 cut(s) 185, 236, 672, 799, 966, 990, 1674, 2209
Bso31I GGTCTC 3 cut(s) 463, 629, 1034
BsoBI CYCGRG 1 cut(s) 632
Bsp119I TTCGAA 1 cut(s) 1574
Bsp1286I GDGCHC 6 cut(s) 486, 762, 1074, 1092, 1125, 1527
Bsp13I TCCGGA 1 cut(s) 2249
Bsp143I GATC 8 cut(s) 6, 173, 520, 881, 1516, 1549, 2011, 2184
Bsp19I CCATGG 1 cut(s) 753
BspANI GGCC 8 cut(s) 185, 236, 672, 799, 966, 990, 1674, 2209
BspCNI CTCAG 3 cut(s) 487, 1219, 1369
BspEI TCCGGA 1 cut(s) 2249
BspFNI CGCG 2 cut(s) 278, 1677
BspHI TCATGA 1 cut(s) 540
BspLI GGNNCC 2 cut(s) 175, 973
BspMAI CTGCAG 1 cut(s) 1117
BspOI GCTAGC 2 cut(s) 203, 1047
BspPI GGATC 4 cut(s) 168, 181, 515, 1557
BspT104I TTCGAA 1 cut(s) 1574
BspTNI GGTCTC 3 cut(s) 463, 629, 1034
BsrBI CCGCTC 1 cut(s) 233
BsrFI RCCGGY 4 cut(s) 209, 572, 672, 1343
BsrI ACTGG 4 cut(s) 139, 290, 384, 796
BssAI RCCGGY 4 cut(s) 209, 572, 672, 1343
BssECI CCNNGG 6 cut(s) 373, 639, 667, 753, 908, 967
BssMI GATC 8 cut(s) 6, 173, 520, 881, 1516, 1549, 2011, 2184
BssNI GRCGYC 2 cut(s) 537, 1079
BssT1I CCWWGG 1 cut(s) 753
Bst2UI CCWGG 5 cut(s) 374, 641, 668, 909, 969
Bst6I CTCTTC 2 cut(s) 659, 998
BstACI GRCGYC 2 cut(s) 537, 1079
BstBAI YACGTR 1 cut(s) 1768
BstBI TTCGAA 1 cut(s) 1574
BstC8I GCNNGC 7 cut(s) 201, 280, 322, 555, 797, 1045, 1215
BstDEI CTNAG 5 cut(s) 495, 1185, 1206, 1356, 2022
BstDSI CCRYGG 1 cut(s) 753
BstENI CCTNNNNNAGG 1 cut(s) 1188
BstF5I GGATG 8 cut(s) 9, 119, 246, 330, 733, 1736, 1801, 2053
BstFNI CGCG 2 cut(s) 278, 1677
BstH2I RGCGCY 2 cut(s) 200, 570
BstHHI GCGC 4 cut(s) 199, 569, 874, 1153
BstKTI GATC 8 cut(s) 9, 176, 523, 884, 1519, 1552, 2014, 2187
BstMAI GTCTC 8 cut(s) 463, 629, 782, 804, 1034, 1196, 1445, 2166
BstMBI GATC 8 cut(s) 6, 173, 520, 881, 1516, 1549, 2011, 2184
BstMCI CGRYCG 3 cut(s) 345, 1086, 1675
BstMWI GCNNNNNNNGC 8 cut(s) 496, 554, 1069, 1078, 1087, 1129, 1307, 1316
BstNI CCWGG 5 cut(s) 374, 641, 668, 909, 969
BstNSI RCATGY 1 cut(s) 712
BstPAI GACNNNNGTC 1 cut(s) 1026
BstSCI CCNGG 9 cut(s) 180, 315, 372, 639, 666, 907, 961, 967, 1267
BstSFI CTRYAG 2 cut(s) 562, 1113
BstSLI GKGCMC 4 cut(s) 762, 1074, 1092, 1125
BstUI CGCG 2 cut(s) 278, 1677
BstV1I GCAGC 1 cut(s) 1297
BstX2I RGATCY 3 cut(s) 173, 1516, 1549
BstYI RGATCY 3 cut(s) 173, 1516, 1549
BstZI CGGCCG 1 cut(s) 1672
BsuRI GGCC 8 cut(s) 185, 236, 672, 799, 966, 990, 1674, 2209
BtgI CCRYGG 1 cut(s) 753
BtgZI GCGATG 1 cut(s) 416
BtrI CACGTC 1 cut(s) 1773
BtsCI GGATG 8 cut(s) 9, 119, 246, 330, 733, 1736, 1801, 2053
BtsIMutI CAGTG 1 cut(s) 462
Cac8I GCNNGC 7 cut(s) 201, 280, 322, 555, 797, 1045, 1215
CaiI CAGNNNCTG 1 cut(s) 379
CciI TCATGA 1 cut(s) 540
CfoI GCGC 4 cut(s) 199, 569, 874, 1153
Cfr10I RCCGGY 4 cut(s) 209, 572, 672, 1343
Cfr13I GGNCC 6 cut(s) 160, 355, 670, 827, 965, 1408
CpoI CGGWCCG 1 cut(s) 827
CseI GACGC 4 cut(s) 249, 725, 1087, 1446
Csp6I GTAC 5 cut(s) 598, 613, 700, 802, 1995
CspAI ACCGGT 1 cut(s) 572
CspCI CAANNNNNGTGG 2 cut(s) 1278, 1313
CspI CGGWCCG 1 cut(s) 827
CviQI GTAC 5 cut(s) 598, 613, 700, 802, 1995
DdeI CTNAG 5 cut(s) 495, 1185, 1206, 1356, 2022
DpnI GATC 8 cut(s) 8, 175, 522, 883, 1518, 1551, 2013, 2186
DpnII GATC 8 cut(s) 6, 173, 520, 881, 1516, 1549, 2011, 2184
DrdI GACNNNNNNGTC 2 cut(s) 384, 821
DseDI GACNNNNNNGTC 2 cut(s) 384, 821
EaeI YGGCCR 4 cut(s) 183, 234, 797, 1672
EagI CGGCCG 1 cut(s) 1672
Eam1104I CTCTTC 2 cut(s) 659, 998
EarI CTCTTC 2 cut(s) 659, 998
Ecl136II GAGCTC 1 cut(s) 1525
EclXI CGGCCG 1 cut(s) 1672
Eco130I CCWWGG 1 cut(s) 753
Eco147I AGGCCT 1 cut(s) 2209
Eco24I GRGCYC 1 cut(s) 1527
Eco31I GGTCTC 3 cut(s) 463, 629, 1034
Eco47I GGWCC 4 cut(s) 160, 355, 827, 1408
Eco47III AGCGCT 1 cut(s) 198
Eco52I CGGCCG 1 cut(s) 1672
Eco53kI GAGCTC 1 cut(s) 1525
Eco57I CTGAAG 1 cut(s) 1899
Eco88I CYCGRG 1 cut(s) 632
EcoICRI GAGCTC 1 cut(s) 1525
EcoNI CCTNNNNNAGG 1 cut(s) 1188
EcoO109I RGGNCCY 1 cut(s) 355
EcoRII CCWGG 5 cut(s) 372, 639, 666, 907, 967
EcoT14I CCWWGG 1 cut(s) 753
EcoT38I GRGCYC 1 cut(s) 1527
ErhI CCWWGG 1 cut(s) 753
Esp3I CGTCTC 1 cut(s) 804
FaqI GGGAC 4 cut(s) 390, 907, 1449, 2175
FauI CCCGC 3 cut(s) 117, 437, 1265
FbaI TGATCA 1 cut(s) 2184
Fnu4HI GCNGC 6 cut(s) 113, 234, 500, 1311, 1675, 1955
FokI GGATG 7 cut(s) 106, 233, 317, 740, 1743, 1808, 2040
FriOI GRGCYC 1 cut(s) 1527
Fsp4HI GCNGC 6 cut(s) 113, 234, 500, 1311, 1675, 1955
FspBI CTAG 6 cut(s) 200, 392, 525, 1044, 1553, 1826
FspI TGCGCA 1 cut(s) 873
GlaI GCGC 4 cut(s) 198, 568, 873, 1152
GluI GCNGC 6 cut(s) 113, 234, 500, 1311, 1675, 1955
GsaI CCCAGC 1 cut(s) 1708
GsuI CTGGAG 2 cut(s) 122, 1608
HaeII RGCGCY 2 cut(s) 200, 570
HaeIII GGCC 8 cut(s) 185, 236, 672, 799, 966, 990, 1674, 2209
HgaI GACGC 4 cut(s) 249, 725, 1087, 1446
HhaI GCGC 4 cut(s) 199, 569, 874, 1153
Hin1I GRCGYC 2 cut(s) 537, 1079
Hin6I GCGC 4 cut(s) 197, 567, 872, 1151
HinP1I GCGC 4 cut(s) 197, 567, 872, 1151
HincII GTYRAC 2 cut(s) 389, 2277
HindII GTYRAC 2 cut(s) 389, 2277
HpaI GTTAAC 1 cut(s) 2277
HphI GGTGA 3 cut(s) 394, 545, 1998
Hpy166II GTNNAC 6 cut(s) 82, 144, 389, 922, 1238, 2277
Hpy8I GTNNAC 6 cut(s) 82, 144, 389, 922, 1238, 2277
Hpy99I CGWCG 1 cut(s) 719
HpyAV CCTTC 7 cut(s) 26, 40, 319, 538, 1474, 2106, 2222
HpyCH4IV ACGT 6 cut(s) 51, 300, 537, 1023, 1767, 1772
HpyF10VI GCNNNNNNNGC 8 cut(s) 496, 554, 1069, 1078, 1087, 1129, 1307, 1316
HpyF3I CTNAG 5 cut(s) 495, 1185, 1206, 1356, 2022
HpySE526I ACGT 6 cut(s) 51, 300, 537, 1023, 1767, 1772
Hsp92I GRCGYC 2 cut(s) 537, 1079
HspAI GCGC 4 cut(s) 197, 567, 872, 1151
Kpn2I TCCGGA 1 cut(s) 2249
Ksp22I TGATCA 1 cut(s) 2184
KspAI GTTAAC 1 cut(s) 2277
Kzo9I GATC 8 cut(s) 6, 173, 520, 881, 1516, 1549, 2011, 2184
LmnI GCTCC 2 cut(s) 230, 1530
Lsp1109I GCAGC 1 cut(s) 1297
LweI GCATC 7 cut(s) 222, 393, 443, 718, 883, 1342, 2062
MaeI CTAG 6 cut(s) 200, 392, 525, 1044, 1553, 1826
MaeII ACGT 6 cut(s) 51, 300, 537, 1023, 1767, 1772
MaeIII GTNAC 4 cut(s) 533, 620, 1346, 1768
MalI GATC 8 cut(s) 8, 175, 522, 883, 1518, 1551, 2013, 2186
MbiI CCGCTC 1 cut(s) 233
MboI GATC 8 cut(s) 6, 173, 520, 881, 1516, 1549, 2011, 2184
MfeI CAATTG 1 cut(s) 2270
MflI RGATCY 3 cut(s) 173, 1516, 1549
MhlI GDGCHC 6 cut(s) 486, 762, 1074, 1092, 1125, 1527
MlyI GAGTC 5 cut(s) 394, 617, 674, 889, 1198
MmeI TCCRAC 6 cut(s) 201, 288, 682, 708, 1179, 1629
MroI TCCGGA 1 cut(s) 2249
MroXI GAANNNNTTC 2 cut(s) 710, 2313
MseI TTAA 6 cut(s) 453, 902, 1880, 1944, 2106, 2276
MslI CAYNNNNRTG 3 cut(s) 479, 707, 765
MspR9I CCNGG 9 cut(s) 182, 317, 374, 641, 668, 909, 963, 969, 1269
MunI CAATTG 1 cut(s) 2270
MvaI CCWGG 5 cut(s) 374, 641, 668, 909, 969
MvnI CGCG 2 cut(s) 278, 1677
MwoI GCNNNNNNNGC 8 cut(s) 496, 554, 1069, 1078, 1087, 1129, 1307, 1316
NciI CCSGG 4 cut(s) 182, 317, 963, 1269
NcoI CCATGG 1 cut(s) 753
NdeII GATC 8 cut(s) 6, 173, 520, 881, 1516, 1549, 2011, 2184
NheI GCTAGC 2 cut(s) 199, 1043
NlaIV GGNNCC 2 cut(s) 175, 973
NmuCI GTSAC 4 cut(s) 533, 620, 1346, 1768
NsbI TGCGCA 1 cut(s) 873
NspI RCATGY 1 cut(s) 712
NspV TTCGAA 1 cut(s) 1574
PagI TCATGA 1 cut(s) 540
PceI AGGCCT 1 cut(s) 2209
PciI ACATGT 1 cut(s) 708
PdmI GAANNNNTTC 2 cut(s) 710, 2313
PfeI GAWTC 6 cut(s) 219, 1156, 1531, 1619, 1830, 2061
PflMI CCANNNNNTGG 1 cut(s) 379
PinAI ACCGGT 1 cut(s) 572
PkrI GCNGC 6 cut(s) 114, 235, 501, 1312, 1676, 1956
PleI GAGTC 5 cut(s) 393, 617, 674, 889, 1198
PpsI GAGTC 5 cut(s) 393, 617, 674, 889, 1198
Ppu21I YACGTR 1 cut(s) 1768
PpuMI RGGWCCY 1 cut(s) 355
PscI ACATGT 1 cut(s) 708
PshAI GACNNNNGTC 1 cut(s) 1026
PshBI ATTAAT 1 cut(s) 902
PsiI TTATAA 2 cut(s) 1818, 1961
Psp124BI GAGCTC 1 cut(s) 1527
Psp1406I AACGTT 2 cut(s) 51, 300
Psp5II RGGWCCY 1 cut(s) 355
Psp6I CCWGG 5 cut(s) 372, 639, 666, 907, 967
PspFI CCCAGC 1 cut(s) 1704
PspGI CCWGG 5 cut(s) 372, 639, 666, 907, 967
PspN4I GGNNCC 2 cut(s) 175, 973
PspPI GGNCC 6 cut(s) 160, 355, 670, 827, 965, 1408
PspPPI RGGWCCY 1 cut(s) 355
PstI CTGCAG 1 cut(s) 1117
PstNI CAGNNNCTG 1 cut(s) 379
PsuI RGATCY 3 cut(s) 173, 1516, 1549
RsaI GTAC 5 cut(s) 599, 614, 701, 803, 1996
RsaNI GTAC 5 cut(s) 598, 613, 700, 802, 1995
RseI CAYNNNNRTG 3 cut(s) 479, 707, 765
Rsr2I CGGWCCG 1 cut(s) 827
RsrII CGGWCCG 1 cut(s) 827
SacI GAGCTC 1 cut(s) 1527
SaqAI TTAA 6 cut(s) 453, 902, 1880, 1944, 2106, 2276
SatI GCNGC 6 cut(s) 113, 234, 500, 1311, 1675, 1955
Sau3AI GATC 8 cut(s) 6, 173, 520, 881, 1516, 1549, 2011, 2184
Sau96I GGNCC 6 cut(s) 160, 355, 670, 827, 965, 1408
SchI GAGTC 5 cut(s) 394, 617, 674, 889, 1198
ScrFI CCNGG 9 cut(s) 182, 317, 374, 641, 668, 909, 963, 969, 1269
SduI GDGCHC 6 cut(s) 486, 762, 1074, 1092, 1125, 1527
SfaNI GCATC 7 cut(s) 222, 393, 443, 718, 883, 1342, 2062
SfcI CTRYAG 2 cut(s) 562, 1113
SfuI TTCGAA 1 cut(s) 1574
SinI GGWCC 4 cut(s) 160, 355, 827, 1408
SmiMI CAYNNNNRTG 3 cut(s) 479, 707, 765
SmlI CTYRAG 2 cut(s) 485, 1520
SmoI CTYRAG 2 cut(s) 485, 1520
SpeI ACTAGT 1 cut(s) 391
SseBI AGGCCT 1 cut(s) 2209
SspI AATATT 1 cut(s) 1327
SspMI CTAG 6 cut(s) 200, 392, 525, 1044, 1553, 1826
SstI GAGCTC 1 cut(s) 1527
StuI AGGCCT 1 cut(s) 2209
StyD4I CCNGG 9 cut(s) 180, 315, 372, 639, 666, 907, 961, 967, 1267
StyI CCWWGG 1 cut(s) 753
TaiI ACGT 6 cut(s) 54, 303, 540, 1026, 1770, 1775
TaqI TCGA 9 cut(s) 678, 714, 837, 880, 1394, 1534, 1574, 2110, 2224
TaqII GACCGA 1 cut(s) 815
TatI WGTACW 2 cut(s) 699, 1994
TauI GCSGC 5 cut(s) 115, 236, 502, 1677, 1957
TfiI GAWTC 6 cut(s) 219, 1156, 1531, 1619, 1830, 2061
Tru1I TTAA 6 cut(s) 453, 902, 1880, 1944, 2106, 2276
Tru9I TTAA 6 cut(s) 453, 902, 1880, 1944, 2106, 2276
TscAI CASTG 1 cut(s) 469
TseFI GTSAC 4 cut(s) 533, 620, 1346, 1768
TseI GCWGC 1 cut(s) 1310
Tsp45I GTSAC 4 cut(s) 533, 620, 1346, 1768
TspDTI ATGAA 6 cut(s) 557, 719, 1337, 1771, 1861, 1882
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 1 cut(s) 469
Van91I CCANNNNNTGG 1 cut(s) 379
VpaK11BI GGWCC 4 cut(s) 160, 355, 827, 1408
VspI ATTAAT 1 cut(s) 902
XagI CCTNNNNNAGG 1 cut(s) 1188
XbaI TCTAGA 1 cut(s) 1552
XceI RCATGY 1 cut(s) 712
XcmI CCANNNNNNNNNTGG 1 cut(s) 2165
XmnI GAANNNNTTC 2 cut(s) 710, 2313
XspI CTAG 6 cut(s) 200, 392, 525, 1044, 1553, 1826
ZraI GACGTC 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.