Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010653

Physical Location & Seq

Genomic Coordinates Reverse (-)

3392943 .. 3395181

Gene Structure 2239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G10350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGGGGTGGATTACTACAATGTTCTGAAAGTGAATCGAAATGCTAACGAAGATGATCTGAAGAAGTCTTACCGGCGAATGGCTATGAAATGGCACCCTGACAAAAACCCTACGAGCAAGAAAGAAGCTGAAGCTAAGTTCAAGCAGATCTCTGAAGCTTACGACGTCTTGAGCGATCCTCAGAGACGTCAGATCTACGATCAGTACGGAGAAGAAGGTCTTAAATCCACCGATTTACCTACTGCGGCGGAGACGGCGGCGCATCAGCAGCAGCGGAGCTACTCTTCTAGCAACTCTGAGTTTCGGTATTATCCGCGTGATGCTGAAGATATCTTTGCTGAGTTTTTCGGCGAATCCGGTGATGCTTTTGGCGGAGGGAGTAGCGGAAGGACACGTGGAGATGGCGGTGATGGTGGCGGTCGGAGATTTAAAAGTGCAGAAGCAGGGAGCCAGGCTAATAGAAAGACGCCGCCGACGAACAAAAAAACGACGCCGCCGGCGAATAGGAAGGCTCCGGCTATTGAGAGTAAATTGGCTTGCACATTGGAGGAGCTCTACAAAGGTGCAAAGAAGAAGATGCGAATTTCTCGCGTTGTTCCTGATGATTTTGGAAAGCCAAAGACAGTCCAAGAGATATTGAAGATAGACATAAAACCAGGTTGGAAGAAAGGCACAAAGATCACTTTTCCAGAGAAAGGCAACCAAGAACCTGGTGTCACTCCTGCGGATCTTATATTCGTGGTTGACGAGAAACCGCATTCGGTATTCAAGAGAGACGGTAACGATCTGATTCTCGAGAAGAAAGTCTCTCTTATAGATGCTTTAACCGGTCTCACCATTAGCGTAACGACTCTAGACGGGAGGAGCCTAACTATCCCGGTGCTGGATATCGTAAAACCGGGTCAGGAGATTGTGATCCCGAATGAGGGAATGCCTACTAAAGACCCTTTGAAGAGAGGAGACCTTAGAGTTACCTTTGAAATCTTGTTCCCGTCAAGGCTAACGTCAGAACAGAAGAATGACCTCAAGAGAGTTCTTGGTGGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

349

Amino Acids

38.76

Weight (kDa)

9.27

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 67	1.9e-26	DnaJ domain
DnaJ_C	PF01556	174 - 331	1.3e-41	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10350 AT1G59725
fragaria_vesca	FvH4_4g35640
malus_domestica	MD13G1081500.v1.1 MD13G1218800.v1.1 MD16G1080500.v1.1
prunus_persica	Prupe.1G265500_v2.0.a1 Prupe.1G265500_v2.0.a1
pyrus_communis	pycom13g07030 pycom16g06970
rosa_chinensis	RchiOBHm_Chr4g0445261
rosa_laevigata	RLG00000005754
rosa_multiflora	Rmu_sc0000050.1_g000026
rosa_roxburghii	Rroxscaffold_5G00385770
rosa_rugosa	Rorug04G0360000
rosa_samantha	Rh4AG421300 Rh4BG433200 Rh4CG447900 Rh4DG429300
rosa_wichuraiana	Rw4G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	168, 190
AccB1I	GGYRCC	1 cut(s)	93
AccII	CGCG	2 cut(s)	316, 591
AclWI	GGATC	3 cut(s)	170, 735, 910
AcsI	RAATTY	1 cut(s)	582
AcuI	CTGAAG	4 cut(s)	80, 150, 174, 345
AcvI	CACGTG	1 cut(s)	395
AcyI	GRCGYC	4 cut(s)	165, 187, 467, 491
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	5 cut(s)	79, 695, 883, 925, 926
AflIII	ACRYGT	1 cut(s)	392
AgeI	ACCGGT	1 cut(s)	827
AgsI	TTSAA	5 cut(s)	142, 640, 769, 952, 980
AjnI	CCWGG	3 cut(s)	450, 655, 709
AluBI	AGCT	6 cut(s)	128, 134, 158, 279, 553, 1047
AluI	AGCT	6 cut(s)	128, 134, 158, 279, 553, 1047
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	6 cut(s)	178, 245, 768, 811, 836, 954
AlwI	GGATC	3 cut(s)	170, 735, 910
Ama87I	CYCGRG	1 cut(s)	794
ApeKI	GCWGC	2 cut(s)	268, 271
ApoI	RAATTY	1 cut(s)	582
AsiGI	ACCGGT	1 cut(s)	827
AspLEI	GCGC	1 cut(s)	262
AsuC2I	CCSGG	2 cut(s)	878, 900
AsuHPI	GGTGA	3 cut(s)	371, 419, 826
AvaI	CYCGRG	1 cut(s)	794
BanI	GGYRCC	1 cut(s)	93
BanII	GRGCYC	1 cut(s)	555
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbrPI	CACGTG	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	2 cut(s)	280, 283
BccI	CCATC	2 cut(s)	395, 404
BceAI	ACGGC	1 cut(s)	270
BciT130I	CCWGG	3 cut(s)	452, 657, 711
BcnI	CCSGG	2 cut(s)	878, 900
BcoDI	GTCTC	6 cut(s)	178, 245, 768, 811, 836, 954
BfaI	CTAG	2 cut(s)	288, 854
BglII	AGATCT	2 cut(s)	147, 192
BisI	GCNGC	6 cut(s)	246, 258, 269, 272, 470, 494
BlsI	GCNGC	6 cut(s)	247, 259, 270, 273, 471, 495
Bme1390I	CCNGG	5 cut(s)	452, 657, 711, 878, 900
BmeT110I	CYCGRG	1 cut(s)	794
BmiI	GGNNCC	4 cut(s)	95, 449, 513, 866
BmrFI	CCNGG	5 cut(s)	452, 657, 711, 878, 900
BmsI	GCATC	5 cut(s)	271, 310, 352, 567, 808
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
BpuEI	CTTGAG	2 cut(s)	190, 1010
BpuMI	CCSGG	2 cut(s)	878, 900
BsaAI	YACGTR	1 cut(s)	395
BsaBI	GATNNNNATC	1 cut(s)	914
BsaHI	GRCGYC	4 cut(s)	165, 187, 467, 491
BsaI	GGTCTC	2 cut(s)	836, 954
BsaWI	WCCGGW	2 cut(s)	356, 827
Bsc4I	CCNNNNNNNGG	5 cut(s)	79, 695, 883, 925, 926
Bse118I	RCCGGY	3 cut(s)	72, 496, 827
Bse8I	GATNNNNATC	1 cut(s)	914
BseBI	CCWGG	3 cut(s)	452, 657, 711
BseJI	GATNNNNATC	1 cut(s)	914
BseLI	CCNNNNNNNGG	5 cut(s)	79, 695, 883, 925, 926
BseMII	CTCAG	3 cut(s)	194, 288, 330
BseRI	GAGGAG	3 cut(s)	563, 877, 972
BseXI	GCAGC	2 cut(s)	280, 283
BsgI	GTGCAG	1 cut(s)	456
Bsh1236I	CGCG	2 cut(s)	316, 591
Bsh1285I	CGRYCG	1 cut(s)	421
BshNI	GGYRCC	1 cut(s)	93
BshTI	ACCGGT	1 cut(s)	827
BsiEI	CGRYCG	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	555
BsiHKCI	CYCGRG	1 cut(s)	794
BsiSI	CCGG	7 cut(s)	73, 357, 497, 515, 828, 878, 899
BslI	CCNNNNNNNGG	5 cut(s)	79, 695, 883, 925, 926
BsmAI	GTCTC	6 cut(s)	178, 245, 768, 811, 836, 954
BsmBI	CGTCTC	3 cut(s)	178, 245, 768
BsmI	GAATGC	2 cut(s)	757, 936
Bso31I	GGTCTC	2 cut(s)	836, 954
BsoBI	CYCGRG	1 cut(s)	794
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp143I	GATC	9 cut(s)	55, 147, 175, 192, 199, 678, 727, 784, 915
BspCNI	CTCAG	3 cut(s)	193, 289, 331
BspFNI	CGCG	2 cut(s)	316, 591
BspLI	GGNNCC	4 cut(s)	95, 449, 513, 866
BspPI	GGATC	3 cut(s)	170, 735, 910
BspT107I	GGYRCC	1 cut(s)	93
BspTNI	GGTCTC	2 cut(s)	836, 954
BsrFI	RCCGGY	3 cut(s)	72, 496, 827
BssAI	RCCGGY	3 cut(s)	72, 496, 827
BssMI	GATC	9 cut(s)	55, 147, 175, 192, 199, 678, 727, 784, 915
BssNI	GRCGYC	4 cut(s)	165, 187, 467, 491
Bst2UI	CCWGG	3 cut(s)	452, 657, 711
Bst4CI	ACNGT	2 cut(s)	625, 779
Bst6I	CTCTTC	2 cut(s)	289, 947
BstACI	GRCGYC	4 cut(s)	165, 187, 467, 491
BstBAI	YACGTR	1 cut(s)	395
BstC8I	GCNNGC	2 cut(s)	498, 538
BstDEI	CTNAG	5 cut(s)	135, 180, 297, 339, 965
BstFNI	CGCG	2 cut(s)	316, 591
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	9 cut(s)	58, 150, 178, 195, 202, 681, 730, 787, 918
BstMAI	GTCTC	6 cut(s)	178, 245, 768, 811, 836, 954
BstMBI	GATC	9 cut(s)	55, 147, 175, 192, 199, 678, 727, 784, 915
BstMCI	CGRYCG	1 cut(s)	421
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 268
BstNI	CCWGG	3 cut(s)	452, 657, 711
BstSCI	CCNGG	5 cut(s)	450, 655, 709, 876, 898
BstUI	CGCG	2 cut(s)	316, 591
BstV1I	GCAGC	2 cut(s)	280, 283
BstX2I	RGATCY	3 cut(s)	147, 192, 727
BstXI	CCANNNNNNTGG	1 cut(s)	710
BstYI	RGATCY	3 cut(s)	147, 192, 727
Cac8I	GCNNGC	2 cut(s)	498, 538
CfoI	GCGC	1 cut(s)	262
Cfr10I	RCCGGY	3 cut(s)	72, 496, 827
CseI	GACGC	2 cut(s)	475, 499
CsiI	ACCWGGT	2 cut(s)	655, 709
Csp6I	GTAC	1 cut(s)	205
CspAI	ACCGGT	1 cut(s)	827
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	5 cut(s)	135, 180, 297, 339, 965
DpnI	GATC	9 cut(s)	57, 149, 177, 194, 201, 680, 729, 786, 917
DpnII	GATC	9 cut(s)	55, 147, 175, 192, 199, 678, 727, 784, 915
DraI	TTTAAA	1 cut(s)	430
Eam1104I	CTCTTC	2 cut(s)	289, 947
EarI	CTCTTC	2 cut(s)	289, 947
EciI	GGCGGA	2 cut(s)	263, 387
Ecl136II	GAGCTC	1 cut(s)	553
Eco24I	GRGCYC	1 cut(s)	555
Eco31I	GGTCTC	2 cut(s)	836, 954
Eco32I	GATATC	2 cut(s)	331, 889
Eco53kI	GAGCTC	1 cut(s)	553
Eco57I	CTGAAG	4 cut(s)	80, 150, 174, 345
Eco72I	CACGTG	1 cut(s)	395
Eco88I	CYCGRG	1 cut(s)	794
EcoICRI	GAGCTC	1 cut(s)	553
EcoRII	CCWGG	3 cut(s)	450, 655, 709
EcoRV	GATATC	2 cut(s)	331, 889
EcoT38I	GRGCYC	1 cut(s)	555
Esp3I	CGTCTC	3 cut(s)	178, 245, 768
FaiI	YATR	4 cut(s)	86, 650, 734, 815
FalI	AAGNNNNNCTT	4 cut(s)	204, 236, 795, 827
Fnu4HI	GCNGC	6 cut(s)	246, 258, 269, 272, 470, 494
FriOI	GRGCYC	1 cut(s)	555
Fsp4HI	GCNGC	6 cut(s)	246, 258, 269, 272, 470, 494
FspBI	CTAG	2 cut(s)	288, 854
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	6 cut(s)	246, 258, 269, 272, 470, 494
HapII	CCGG	7 cut(s)	73, 357, 497, 515, 828, 878, 899
HgaI	GACGC	2 cut(s)	475, 499
HhaI	GCGC	1 cut(s)	262
Hin1I	GRCGYC	4 cut(s)	165, 187, 467, 491
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HindIII	AAGCTT	1 cut(s)	156
HinfI	GANTC	4 cut(s)	34, 353, 790, 850
HpaII	CCGG	7 cut(s)	73, 357, 497, 515, 828, 878, 899
HphI	GGTGA	3 cut(s)	371, 419, 826
Hpy166II	GTNNAC	1 cut(s)	745
Hpy188I	TCNGA	9 cut(s)	27, 60, 154, 183, 192, 298, 423, 789, 1009
Hpy8I	GTNNAC	1 cut(s)	745
Hpy99I	CGWCG	3 cut(s)	167, 478, 493
HpyAV	CCTTC	3 cut(s)	209, 381, 502
HpyCH4III	ACNGT	2 cut(s)	625, 779
HpyCH4IV	ACGT	4 cut(s)	165, 187, 394, 1004
HpyCH4V	TGCA	3 cut(s)	437, 540, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 268
HpyF3I	CTNAG	5 cut(s)	135, 180, 297, 339, 965
HpySE526I	ACGT	4 cut(s)	165, 187, 394, 1004
Hsp92I	GRCGYC	4 cut(s)	165, 187, 467, 491
HspAI	GCGC	1 cut(s)	260
KroI	GCCGGC	1 cut(s)	496
KroNI	GCCGGC	1 cut(s)	498
Kzo9I	GATC	9 cut(s)	55, 147, 175, 192, 199, 678, 727, 784, 915
LmnI	GCTCC	5 cut(s)	276, 447, 517, 550, 864
Lsp1109I	GCAGC	2 cut(s)	280, 283
LweI	GCATC	5 cut(s)	271, 310, 352, 567, 808
MabI	ACCWGGT	2 cut(s)	655, 709
MaeI	CTAG	2 cut(s)	288, 854
MaeII	ACGT	4 cut(s)	165, 187, 394, 1004
MaeIII	GTNAC	4 cut(s)	715, 779, 844, 970
MalI	GATC	9 cut(s)	57, 149, 177, 194, 201, 680, 729, 786, 917
MboI	GATC	9 cut(s)	55, 147, 175, 192, 199, 678, 727, 784, 915
MflI	RGATCY	3 cut(s)	147, 192, 727
MhlI	GDGCHC	1 cut(s)	555
MluCI	AATT	2 cut(s)	530, 582
MlyI	GAGTC	1 cut(s)	844
MmeI	TCCRAC	2 cut(s)	401, 641
MnlI	CCTC	7 cut(s)	189, 368, 541, 855, 919, 950, 1034
MreI	CGCCGGCG	1 cut(s)	496
MroNI	GCCGGC	1 cut(s)	496
MseI	TTAA	3 cut(s)	222, 429, 824
MspA1I	CMGCKG	1 cut(s)	274
MspI	CCGG	7 cut(s)	73, 357, 497, 515, 828, 878, 899
MspR9I	CCNGG	5 cut(s)	452, 657, 711, 878, 900
Mva1269I	GAATGC	2 cut(s)	757, 936
MvaI	CCWGG	3 cut(s)	452, 657, 711
MvnI	CGCG	2 cut(s)	316, 591
MwoI	GCNNNNNNNGC	2 cut(s)	254, 268
NaeI	GCCGGC	1 cut(s)	498
NciI	CCSGG	2 cut(s)	878, 900
NdeII	GATC	9 cut(s)	55, 147, 175, 192, 199, 678, 727, 784, 915
NgoMIV	GCCGGC	1 cut(s)	496
NlaIV	GGNNCC	4 cut(s)	95, 449, 513, 866
NmuCI	GTSAC	1 cut(s)	715
PaeR7I	CTCGAG	1 cut(s)	794
PcsI	WCGNNNNNNNCGW	4 cut(s)	171, 473, 497, 744
PctI	GAATGC	2 cut(s)	757, 936
PdiI	GCCGGC	1 cut(s)	498
PfeI	GAWTC	3 cut(s)	34, 353, 790
PinAI	ACCGGT	1 cut(s)	827
PkrI	GCNGC	6 cut(s)	247, 259, 270, 273, 471, 495
PleI	GAGTC	1 cut(s)	844
PmaCI	CACGTG	1 cut(s)	395
PmlI	CACGTG	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	844
Ppu21I	YACGTR	1 cut(s)	395
Psp124BI	GAGCTC	1 cut(s)	555
Psp6I	CCWGG	3 cut(s)	450, 655, 709
PspCI	CACGTG	1 cut(s)	395
PspGI	CCWGG	3 cut(s)	450, 655, 709
PspN4I	GGNNCC	4 cut(s)	95, 449, 513, 866
PsuI	RGATCY	3 cut(s)	147, 192, 727
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SacI	GAGCTC	1 cut(s)	555
SaqAI	TTAA	3 cut(s)	222, 429, 824
SatI	GCNGC	6 cut(s)	246, 258, 269, 272, 470, 494
Sau3AI	GATC	9 cut(s)	55, 147, 175, 192, 199, 678, 727, 784, 915
SchI	GAGTC	1 cut(s)	844
ScrFI	CCNGG	5 cut(s)	452, 657, 711, 878, 900
SduI	GDGCHC	1 cut(s)	555
SexAI	ACCWGGT	2 cut(s)	655, 709
SfaNI	GCATC	5 cut(s)	271, 310, 352, 567, 808
Sfr274I	CTCGAG	1 cut(s)	794
SgrAI	CRCCGGYG	1 cut(s)	496
SlaI	CTCGAG	1 cut(s)	794
SmlI	CTYRAG	3 cut(s)	169, 794, 1025
SmoI	CTYRAG	3 cut(s)	169, 794, 1025
Sse9I	AATT	2 cut(s)	530, 582
SspMI	CTAG	2 cut(s)	288, 854
SstI	GAGCTC	1 cut(s)	555
StyD4I	CCNGG	5 cut(s)	450, 655, 709, 876, 898
TaaI	ACNGT	2 cut(s)	625, 779
TaiI	ACGT	4 cut(s)	168, 190, 397, 1007
TaqI	TCGA	2 cut(s)	37, 795
TasI	AATT	2 cut(s)	530, 582
TauI	GCSGC	4 cut(s)	248, 260, 472, 496
TfiI	GAWTC	3 cut(s)	34, 353, 790
Tru1I	TTAA	3 cut(s)	222, 429, 824
Tru9I	TTAA	3 cut(s)	222, 429, 824
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	2 cut(s)	268, 271
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	222
XapI	RAATTY	1 cut(s)	582
XbaI	TCTAGA	1 cut(s)	853
XhoI	CTCGAG	1 cut(s)	794
XspI	CTAG	2 cut(s)	288, 854
ZraI	GACGTC	2 cut(s)	166, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.