Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0010653

Physical Location & Seq

Genomic Coordinates Reverse (-)

5723944 .. 5725956

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1081500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGTTGTGGATTTCTACAACGTGCTGAGAGTGAACCGGAACGCGACCCAGGAGGACCTGAAGAAGGCGTACAAGCGCCTGGCGATGAGGTGGCACCCCGACAAGAACCTGGTCGACAACGAGGAAGCGGAGGCCAAGTTCAAGCAGGTGTGCCAGGCGTACGATGTTCTCAGCGACCCGCAGCGGCGCCAGATCTACGACATCTACGGCGAGGAGGGGCTCAATTGCGGCGACCCGGATGACATTTTCGCCGAGTTTTTCGGCGGATCTGGCGGCGTTGGGGACAAGGTGTTCAAGAAGAGCAGTGTGAATGGCGAAGGGCGTAATGGTAATTTGAAGAGTAAGAAGGCTGCGGCGATAGAGAGCAAGTTGGTGTGCAGTTTGGAGGATCTTTACAGAGGGGCGAGGAGGAAGATGAGGATTTCGAGAACTGTTCCTGATGGGTTCGGTAAGCCAAAGACCATTGAGGAAATCCTAAAGATAGACATCAAGCCTGGCTGGAAGAAGGGTACAAAGATCACATTCCCAGAGAAAGGAAACCAAGAGCCGGGCTTCTCTCCGGCTGATCTCATCTTCGTCATCGACGAGAAACCCCACCCTCATTTCAAGAGGGATGGGAATGACCTTGTGGTCACTCAGAAATTATCCCTACTAGAGGCTCTCACCGGGGCGGTCGTCAATCTGACAACGTTGGATGGAAGGGTTCTCAAGATCCCGGTGAGAGACATAATCAAACCTGGCCATGAGGAGGTGGTTGCTAATGAGGGAATGCCCATCTCTAAAGATCCGACCAAGAAAGGGAACCTCAGGGTCAAGTTCGACGTCGTCTTTCCGGCGAAGCTCAGTGCAGAACAGAAGGATGGTCTGAGGAGAGTGCTGGGTGGAGGCGATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

299

Amino Acids

33.19

Weight (kDa)

9.1

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 67	1.8e-25	DnaJ domain
DnaJ_C	PF01556	120 - 278	1.6e-40	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10350 AT1G59725
fragaria_vesca	FvH4_4g35640
malus_domestica	MD13G1081500.v1.1 MD13G1218800.v1.1 MD16G1080500.v1.1
prunus_persica	Prupe.1G265500_v2.0.a1 Prupe.1G265500_v2.0.a1
pyrus_communis	pycom13g07030 pycom16g06970
rosa_chinensis	RchiOBHm_Chr4g0445261
rosa_laevigata	RLG00000005754
rosa_multiflora	Rmu_sc0000050.1_g000026
rosa_roxburghii	Rroxscaffold_5G00385770
rosa_rugosa	Rorug04G0360000
rosa_samantha	Rh4AG421300 Rh4BG433200 Rh4CG447900 Rh4DG429300
rosa_wichuraiana	Rw4G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	136
AasI	GACNNNNNNGTC	1 cut(s)	629
AatII	GACGTC	1 cut(s)	825
Acc36I	ACCTGC	1 cut(s)	136
AccB1I	GGYRCC	2 cut(s)	93, 186
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	44
AciI	CCGC	8 cut(s)	128, 179, 184, 228, 264, 273, 353, 671
AclI	AACGTT	1 cut(s)	689
AclWI	GGATC	4 cut(s)	274, 396, 706, 779
AcoI	YGGCCR	1 cut(s)	739
AcuI	CTGAAG	1 cut(s)	80
AcyI	GRCGYC	2 cut(s)	187, 822
AfaI	GTAC	3 cut(s)	71, 161, 511
AfiI	CCNNNNNNNGG	6 cut(s)	64, 533, 547, 655, 748, 798
AgsI	TTSAA	4 cut(s)	142, 295, 337, 607
AjnI	CCWGG	6 cut(s)	48, 78, 108, 153, 493, 736
AloI	GAACNNNNNNTCC	4 cut(s)	122, 154, 275, 307
AluBI	AGCT	1 cut(s)	841
AluI	AGCT	1 cut(s)	841
Alw26I	GTCTC	1 cut(s)	717
AlwI	GGATC	4 cut(s)	274, 396, 706, 779
AoxI	GGCC	2 cut(s)	132, 739
ApeKI	GCWGC	2 cut(s)	181, 350
AspLEI	GCGC	2 cut(s)	78, 189
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	4 cut(s)	236, 549, 667, 716
AsuHPI	GGTGA	2 cut(s)	655, 730
AvaII	GGWCC	1 cut(s)	55
AxyI	CCTNAGG	1 cut(s)	806
BalI	TGGCCA	1 cut(s)	741
BanI	GGYRCC	2 cut(s)	93, 186
BanII	GRGCYC	1 cut(s)	222
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbvI	GCAGC	2 cut(s)	193, 337
BccI	CCATC	5 cut(s)	434, 608, 689, 782, 854
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	6 cut(s)	50, 80, 110, 155, 495, 738
BcnI	CCSGG	4 cut(s)	236, 549, 667, 716
BcoDI	GTCTC	1 cut(s)	717
BfaI	CTAG	1 cut(s)	653
BfoI	RGCGCY	2 cut(s)	79, 190
BfuAI	ACCTGC	1 cut(s)	136
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	6 cut(s)	182, 185, 229, 274, 351, 354
BlsI	GCNGC	6 cut(s)	183, 186, 230, 275, 352, 355
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	3 cut(s)	95, 188, 803
BpuEI	CTTGAG	1 cut(s)	692
BpuMI	CCSGG	4 cut(s)	236, 549, 667, 716
BsaBI	GATNNNNATC	1 cut(s)	485
BsaHI	GRCGYC	2 cut(s)	187, 822
BsaJI	CCNNGG	2 cut(s)	48, 666
BsaWI	WCCGGW	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	6 cut(s)	64, 533, 547, 655, 748, 798
Bse21I	CCTNAGG	1 cut(s)	806
Bse8I	GATNNNNATC	1 cut(s)	485
BseBI	CCWGG	6 cut(s)	50, 80, 110, 155, 495, 738
BseDI	CCNNGG	2 cut(s)	48, 666
BseGI	GGATG	4 cut(s)	244, 619, 700, 865
BseJI	GATNNNNATC	1 cut(s)	485
BseLI	CCNNNNNNNGG	6 cut(s)	64, 533, 547, 655, 748, 798
BseMII	CTCAG	6 cut(s)	17, 184, 650, 820, 856, 857
BseRI	GAGGAG	4 cut(s)	227, 421, 761, 883
BseXI	GCAGC	2 cut(s)	193, 337
BseYI	CCCAGC	1 cut(s)	877
BsgI	GTGCAG	2 cut(s)	397, 867
Bsh1236I	CGCG	1 cut(s)	44
Bsh1285I	CGRYCG	1 cut(s)	675
BshFI	GGCC	2 cut(s)	134, 741
BshNI	GGYRCC	2 cut(s)	93, 186
BsiEI	CGRYCG	1 cut(s)	675
BsiSI	CCGG	7 cut(s)	37, 236, 548, 560, 666, 716, 833
BsiWI	CGTACG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	6 cut(s)	64, 533, 547, 655, 748, 798
BsmAI	GTCTC	1 cut(s)	717
BsmFI	GGGAC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	774
BsnI	GGCC	2 cut(s)	134, 741
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	7 cut(s)	192, 266, 388, 516, 565, 711, 784
BspACI	CCGC	8 cut(s)	128, 179, 184, 228, 264, 273, 353, 671
BspANI	GGCC	2 cut(s)	134, 741
BspCNI	CTCAG	6 cut(s)	18, 183, 649, 819, 855, 858
BspFNI	CGCG	1 cut(s)	44
BspLI	GGNNCC	3 cut(s)	95, 188, 803
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	4 cut(s)	274, 396, 706, 779
BspQI	GCTCTTC	1 cut(s)	293
BspT107I	GGYRCC	2 cut(s)	93, 186
BssECI	CCNNGG	2 cut(s)	48, 666
BssMI	GATC	7 cut(s)	192, 266, 388, 516, 565, 711, 784
BssNI	GRCGYC	2 cut(s)	187, 822
Bst2UI	CCWGG	6 cut(s)	50, 80, 110, 155, 495, 738
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	2 cut(s)	293, 332
BstACI	GRCGYC	2 cut(s)	187, 822
BstDEI	CTNAG	6 cut(s)	26, 170, 636, 806, 842, 866
BstENI	CCTNNNNNAGG	2 cut(s)	62, 653
BstF5I	GGATG	4 cut(s)	244, 619, 700, 865
BstFNI	CGCG	1 cut(s)	44
BstH2I	RGCGCY	2 cut(s)	79, 190
BstHHI	GCGC	2 cut(s)	78, 189
BstKTI	GATC	7 cut(s)	195, 269, 391, 519, 568, 714, 787
BstMAI	GTCTC	1 cut(s)	717
BstMBI	GATC	7 cut(s)	192, 266, 388, 516, 565, 711, 784
BstMCI	CGRYCG	1 cut(s)	675
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstNI	CCWGG	6 cut(s)	50, 80, 110, 155, 495, 738
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	2 cut(s)	193, 337
BstX2I	RGATCY	5 cut(s)	192, 266, 388, 711, 784
BstYI	RGATCY	5 cut(s)	192, 266, 388, 711, 784
Bsu36I	CCTNAGG	1 cut(s)	806
BsuRI	GGCC	2 cut(s)	134, 741
BtgZI	GCGATG	1 cut(s)	98
BtsCI	GGATG	4 cut(s)	244, 619, 700, 865
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	2 cut(s)	310, 850
BveI	ACCTGC	1 cut(s)	136
CfoI	GCGC	2 cut(s)	78, 189
Cfr13I	GGNCC	1 cut(s)	55
CsiI	ACCWGGT	1 cut(s)	108
Csp6I	GTAC	3 cut(s)	70, 160, 510
CviAII	CATG	1 cut(s)	743
CviQI	GTAC	3 cut(s)	70, 160, 510
DdeI	CTNAG	6 cut(s)	26, 170, 636, 806, 842, 866
DinI	GGCGCC	1 cut(s)	188
DpnI	GATC	7 cut(s)	194, 268, 390, 518, 567, 713, 786
DpnII	GATC	7 cut(s)	192, 266, 388, 516, 565, 711, 784
DrdI	GACNNNNNNGTC	1 cut(s)	629
DseDI	GACNNNNNNGTC	1 cut(s)	629
EaeI	YGGCCR	1 cut(s)	739
Eam1104I	CTCTTC	2 cut(s)	293, 332
EarI	CTCTTC	2 cut(s)	293, 332
EciI	GGCGGA	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	80
Eco81I	CCTNAGG	1 cut(s)	806
EcoNI	CCTNNNNNAGG	2 cut(s)	62, 653
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRII	CCWGG	6 cut(s)	48, 78, 108, 153, 493, 736
EcoT38I	GRGCYC	1 cut(s)	222
EgeI	GGCGCC	1 cut(s)	188
EheI	GGCGCC	1 cut(s)	188
FaeI	CATG	1 cut(s)	746
FaiI	YATR	2 cut(s)	728, 744
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	1 cut(s)	742
FauI	CCCGC	1 cut(s)	186
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	6 cut(s)	182, 185, 229, 274, 351, 354
FokI	GGATG	4 cut(s)	251, 626, 707, 872
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	6 cut(s)	182, 185, 229, 274, 351, 354
FspBI	CTAG	1 cut(s)	653
GlaI	GCGC	2 cut(s)	77, 188
GluI	GCNGC	6 cut(s)	182, 185, 229, 274, 351, 354
GsaI	CCCAGC	1 cut(s)	881
HaeII	RGCGCY	2 cut(s)	79, 190
HaeIII	GGCC	2 cut(s)	134, 741
HapII	CCGG	7 cut(s)	37, 236, 548, 560, 666, 716, 833
HhaI	GCGC	2 cut(s)	78, 189
Hin1I	GRCGYC	2 cut(s)	187, 822
Hin1II	CATG	1 cut(s)	746
Hin6I	GCGC	2 cut(s)	76, 187
HinP1I	GCGC	2 cut(s)	76, 187
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HpaII	CCGG	7 cut(s)	37, 236, 548, 560, 666, 716, 833
HphI	GGTGA	2 cut(s)	655, 730
Hpy166II	GTNNAC	2 cut(s)	34, 115
Hpy188I	TCNGA	4 cut(s)	639, 684, 789, 867
Hpy188III	TCNNGA	5 cut(s)	295, 426, 437, 607, 709
Hpy8I	GTNNAC	2 cut(s)	34, 115
Hpy99I	CGWCG	3 cut(s)	587, 824, 827
HpyAV	CCTTC	6 cut(s)	58, 311, 340, 499, 693, 850
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4IV	ACGT	3 cut(s)	21, 689, 822
HpyCH4V	TGCA	2 cut(s)	378, 848
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	6 cut(s)	26, 170, 636, 806, 842, 866
HpySE526I	ACGT	3 cut(s)	21, 689, 822
Hsp92I	GRCGYC	2 cut(s)	187, 822
Hsp92II	CATG	1 cut(s)	746
HspAI	GCGC	2 cut(s)	76, 187
KasI	GGCGCC	1 cut(s)	186
Kzo9I	GATC	7 cut(s)	192, 266, 388, 516, 565, 711, 784
LguI	GCTCTTC	1 cut(s)	293
Lsp1109I	GCAGC	2 cut(s)	193, 337
MabI	ACCWGGT	1 cut(s)	108
MaeI	CTAG	1 cut(s)	653
MaeII	ACGT	3 cut(s)	21, 689, 822
MaeIII	GTNAC	1 cut(s)	631
MalI	GATC	7 cut(s)	194, 268, 390, 518, 567, 713, 786
MboI	GATC	7 cut(s)	192, 266, 388, 516, 565, 711, 784
MboII	GAAGA	6 cut(s)	73, 310, 349, 424, 514, 565
MfeI	CAATTG	1 cut(s)	223
MflI	RGATCY	5 cut(s)	192, 266, 388, 711, 784
MhlI	GDGCHC	1 cut(s)	222
MlsI	TGGCCA	1 cut(s)	741
MluCI	AATT	3 cut(s)	223, 331, 641
MluNI	TGGCCA	1 cut(s)	741
Mly113I	GGCGCC	1 cut(s)	187
MmeI	TCCRAC	2 cut(s)	672, 812
Mox20I	TGGCCA	1 cut(s)	741
MscI	TGGCCA	1 cut(s)	741
Msp20I	TGGCCA	1 cut(s)	741
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	7 cut(s)	37, 236, 548, 560, 666, 716, 833
MunI	CAATTG	1 cut(s)	223
Mva1269I	GAATGC	1 cut(s)	774
MvaI	CCWGG	6 cut(s)	50, 80, 110, 155, 495, 738
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	270
NarI	GGCGCC	1 cut(s)	187
NciI	CCSGG	4 cut(s)	236, 549, 667, 716
NdeII	GATC	7 cut(s)	192, 266, 388, 516, 565, 711, 784
NlaIII	CATG	1 cut(s)	746
NlaIV	GGNNCC	3 cut(s)	95, 188, 803
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	631
PaqCI	CACCTGC	1 cut(s)	136
PciSI	GCTCTTC	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	1 cut(s)	582
PctI	GAATGC	1 cut(s)	774
Pfl23II	CGTACG	1 cut(s)	159
PflFI	GACNNNGTC	1 cut(s)	824
PkrI	GCNGC	6 cut(s)	183, 186, 230, 275, 352, 355
PluTI	GGCGCC	1 cut(s)	190
PpuMI	RGGWCCY	1 cut(s)	55
Psp1406I	AACGTT	1 cut(s)	689
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	6 cut(s)	48, 78, 108, 153, 493, 736
PspFI	CCCAGC	1 cut(s)	877
PspGI	CCWGG	6 cut(s)	48, 78, 108, 153, 493, 736
PspLI	CGTACG	1 cut(s)	159
PspN4I	GGNNCC	3 cut(s)	95, 188, 803
PspPI	GGNCC	1 cut(s)	55
PspPPI	RGGWCCY	1 cut(s)	55
PsuI	RGATCY	5 cut(s)	192, 266, 388, 711, 784
PsyI	GACNNNGTC	1 cut(s)	824
RsaI	GTAC	3 cut(s)	71, 161, 511
RsaNI	GTAC	3 cut(s)	70, 160, 510
SalI	GTCGAC	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	293
SatI	GCNGC	6 cut(s)	182, 185, 229, 274, 351, 354
Sau3AI	GATC	7 cut(s)	192, 266, 388, 516, 565, 711, 784
Sau96I	GGNCC	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	222
SexAI	ACCWGGT	1 cut(s)	108
SfoI	GGCGCC	1 cut(s)	188
SinI	GGWCC	1 cut(s)	55
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
Sse9I	AATT	3 cut(s)	223, 331, 641
SsiI	CCGC	8 cut(s)	128, 179, 184, 228, 264, 273, 353, 671
SspDI	GGCGCC	1 cut(s)	186
SspMI	CTAG	1 cut(s)	653
TaaI	ACNGT	1 cut(s)	433
TaiI	ACGT	3 cut(s)	24, 692, 825
TaqI	TCGA	4 cut(s)	114, 425, 582, 819
TasI	AATT	3 cut(s)	223, 331, 641
TauI	GCSGC	4 cut(s)	187, 231, 276, 356
TscAI	CASTG	2 cut(s)	310, 850
TseFI	GTSAC	1 cut(s)	631
TseI	GCWGC	2 cut(s)	181, 350
Tsp45I	GTSAC	1 cut(s)	631
TspRI	CASTG	2 cut(s)	310, 850
Tth111I	GACNNNGTC	1 cut(s)	824
VpaK11BI	GGWCC	1 cut(s)	55
XagI	CCTNNNNNAGG	2 cut(s)	62, 653
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	653
ZraI	GACGTC	1 cut(s)	823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.