Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0010653

Physical Location & Seq

Genomic Coordinates Forward (+)

62917821 .. 62919215

Gene Structure 1395 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G036130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCAGTTGACTACTACGCTGTTCTGAAGTTGACCCGGAACGCGAACCAGGAGGACGTGAAGAAGGCGTACAAGAGGTTGGCCATGAAGTGGCACCCGGATAAGAACCCGGTCGACCACAAGGAGGCGGAGGCCAAGTTCAAGCAAGTATGTGAGGCCTACGATGTGCTTAGTGATCCGCAGAAGCGTCAGATCTACGACGTGTACGGCGAGGAGGGACTGAATGATGAGGTTGAGTTTGATGTGGCGGCGCCGCCGAGGAGGTCGGAGCCGGATGATATTTTTAATGAGTTTTTCGAGGACCAGAATAGCTGGCAGAGGGCGTTTAAGAAGACTTGTAATGGCGGCGGCGGGAGTGGGAGGAGTCAGAAGAGCGGTGGTGGGATTGGGAAGAAGGTTGCGGCGGCGGTGGAGAGTAAGCTGGCGTGTAGTTTGGAGGATCTTTACAAGGGAGCGAGAAGGAAAATGAGGATTTCGAGAACTGTTCCTGATAATTTTGGTAAGTCAAAGACAGTTGAGGAAACCTTAAAGATTGATATCAAGCCAGGATGGAAGAAGGGTACTAAGATCACGTTTCCAGAGAAGGGAAACCAAGAACCTGGCAGCTCTGCAGCAGATCTTATTTTCGTCGTGGACGAGAAACCCCATGATGTGTTCAAGAGGGATGGGAATGATCTTGTGGTCGATCATAAGTTAACTCTACTCGAGGCTCTCACTGGAACATTCATCAATCTGACAACCTTGGATGGAAGGGTTCTCCCTATCCCAGTCAGGAACATAATAAATCCTGGTTATGAGGAGGTGATCCCTAATGAGGGAATGCCAATATCAAAAGATCCCACCAAGAAAGGAAACCTCAGGATCAAGTTTGATGTTGTCTTTCCATCAAAGCTCAGCACACAGCAGAGATCTGATCTGAGAAGAGTGCTAGGTGAAGTTGATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

315

Amino Acids

35.36

Weight (kDa)

8.51

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 67	6.3e-26	DnaJ domain
DnaJ_C	PF01556	137 - 295	2.1e-40	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10350 AT1G59725
fragaria_vesca	FvH4_4g35640
malus_domestica	MD13G1081500.v1.1 MD13G1218800.v1.1 MD16G1080500.v1.1
prunus_persica	Prupe.1G265500_v2.0.a1 Prupe.1G265500_v2.0.a1
pyrus_communis	pycom13g07030 pycom16g06970
rosa_chinensis	RchiOBHm_Chr4g0445261
rosa_laevigata	RLG00000005754
rosa_multiflora	Rmu_sc0000050.1_g000026
rosa_roxburghii	Rroxscaffold_5G00385770
rosa_rugosa	Rorug04G0360000
rosa_samantha	Rh4AG421300 Rh4BG433200 Rh4CG447900 Rh4DG429300
rosa_wichuraiana	Rw4G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	93, 250
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccBSI	CCGCTC	1 cut(s)	375
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	44
AclWI	GGATC	5 cut(s)	170, 447, 799, 830, 869
AcoI	YGGCCR	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	251
AfaI	GTAC	3 cut(s)	71, 206, 562
AfiI	CCNNNNNNNGG	5 cut(s)	90, 124, 584, 814, 815
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	2 cut(s)	142, 658
AjiI	CACGTC	2 cut(s)	58, 202
AjnI	CCWGG	4 cut(s)	48, 544, 598, 787
AloI	GAACNNNNNNTCC	2 cut(s)	122, 154
AluBI	AGCT	4 cut(s)	312, 421, 606, 892
AluI	AGCT	4 cut(s)	312, 421, 606, 892
AlwI	GGATC	5 cut(s)	170, 447, 799, 830, 869
Ama87I	CYCGRG	1 cut(s)	704
AoxI	GGCC	3 cut(s)	81, 132, 156
ApeKI	GCWGC	2 cut(s)	603, 611
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	301
AsuC2I	CCSGG	3 cut(s)	37, 98, 110
AsuHPI	GGTGA	2 cut(s)	814, 944
AvaI	CYCGRG	1 cut(s)	704
AvaII	GGWCC	1 cut(s)	301
AxyI	CCTNAGG	1 cut(s)	857
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	2 cut(s)	93, 250
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbsI	GAAGAC	1 cut(s)	338
BbvI	GCAGC	2 cut(s)	615, 623
BccI	CCATC	4 cut(s)	543, 659, 740, 892
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	4 cut(s)	50, 546, 600, 789
BcnI	CCSGG	3 cut(s)	37, 98, 110
BfaI	CTAG	1 cut(s)	929
BfmI	CTRYAG	1 cut(s)	609
BfoI	RGCGCY	1 cut(s)	254
BglII	AGATCT	3 cut(s)	192, 616, 908
BisI	GCNGC	8 cut(s)	249, 254, 346, 349, 402, 405, 604, 612
BlpI	GCTNAGC	1 cut(s)	893
BlsI	GCNGC	8 cut(s)	250, 255, 347, 350, 403, 406, 605, 613
Bme1390I	CCNGG	7 cut(s)	37, 50, 98, 110, 546, 600, 789
Bme18I	GGWCC	1 cut(s)	301
BmeT110I	CYCGRG	1 cut(s)	704
BmgBI	CACGTC	2 cut(s)	58, 202
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	3 cut(s)	95, 252, 270
BmrFI	CCNGG	7 cut(s)	37, 50, 98, 110, 546, 600, 789
BmrI	ACTGGG	1 cut(s)	761
BmuI	ACTGGG	1 cut(s)	761
BpiI	GAAGAC	1 cut(s)	338
Bpu1102I	GCTNAGC	1 cut(s)	893
BpuMI	CCSGG	3 cut(s)	37, 98, 110
BsaBI	GATNNNNATC	1 cut(s)	536
BsaHI	GRCGYC	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	257, 741
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	5 cut(s)	90, 124, 584, 814, 815
Bse1I	ACTGG	2 cut(s)	721, 767
Bse21I	CCTNAGG	1 cut(s)	857
Bse8I	GATNNNNATC	1 cut(s)	536
BseBI	CCWGG	4 cut(s)	50, 546, 600, 789
BseDI	CCNNGG	2 cut(s)	257, 741
BseGI	GGATG	4 cut(s)	280, 554, 670, 751
BseJI	GATNNNNATC	1 cut(s)	536
BseLI	CCNNNNNNNGG	5 cut(s)	90, 124, 584, 814, 815
BseMII	CTCAG	3 cut(s)	871, 907, 908
BseNI	ACTGG	2 cut(s)	721, 767
BseRI	GAGGAG	4 cut(s)	227, 274, 376, 812
BseXI	GCAGC	2 cut(s)	615, 623
Bsh1236I	CGCG	1 cut(s)	44
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	3 cut(s)	83, 134, 158
BshNI	GGYRCC	2 cut(s)	93, 250
BsiEI	CGRYCG	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	704
BsiSI	CCGG	4 cut(s)	37, 98, 110, 272
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	5 cut(s)	90, 124, 584, 814, 815
BsmFI	GGGAC	1 cut(s)	231
BsmI	GAATGC	1 cut(s)	825
BsnI	GGCC	3 cut(s)	83, 134, 158
BsoBI	CYCGRG	1 cut(s)	704
Bsp1720I	GCTNAGC	1 cut(s)	893
BspANI	GGCC	3 cut(s)	83, 134, 158
BspCNI	CTCAG	3 cut(s)	870, 906, 909
BspFNI	CGCG	1 cut(s)	44
BspLI	GGNNCC	3 cut(s)	95, 252, 270
BspMAI	CTGCAG	1 cut(s)	613
BspPI	GGATC	5 cut(s)	170, 447, 799, 830, 869
BspQI	GCTCTTC	1 cut(s)	365
BspT107I	GGYRCC	2 cut(s)	93, 250
BsrBI	CCGCTC	1 cut(s)	375
BsrI	ACTGG	2 cut(s)	721, 767
BssECI	CCNNGG	2 cut(s)	257, 741
BssNI	GRCGYC	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	741
Bst2UI	CCWGG	4 cut(s)	50, 546, 600, 789
Bst4CI	ACNGT	2 cut(s)	484, 514
Bst6I	CTCTTC	2 cut(s)	365, 916
BstACI	GRCGYC	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	314, 423
BstDEI	CTNAG	5 cut(s)	170, 564, 857, 893, 917
BstF5I	GGATG	4 cut(s)	280, 554, 670, 751
BstFNI	CGCG	1 cut(s)	44
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	253
BstMCI	CGRYCG	1 cut(s)	114
BstNI	CCWGG	4 cut(s)	50, 546, 600, 789
BstSCI	CCNGG	7 cut(s)	35, 48, 96, 108, 544, 598, 787
BstSFI	CTRYAG	1 cut(s)	609
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	2 cut(s)	615, 623
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	5 cut(s)	192, 439, 616, 835, 908
BstXI	CCANNNNNNTGG	1 cut(s)	599
BstYI	RGATCY	5 cut(s)	192, 439, 616, 835, 908
Bsu36I	CCTNAGG	1 cut(s)	857
BsuRI	GGCC	3 cut(s)	83, 134, 158
BtrI	CACGTC	2 cut(s)	58, 202
BtsCI	GGATG	4 cut(s)	280, 554, 670, 751
BtsIMutI	CAGTG	1 cut(s)	714
Cac8I	GCNNGC	2 cut(s)	314, 423
CfoI	GCGC	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	301
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	3 cut(s)	70, 205, 561
CviAII	CATG	2 cut(s)	85, 647
CviQI	GTAC	3 cut(s)	70, 205, 561
DdeI	CTNAG	5 cut(s)	170, 564, 857, 893, 917
DinI	GGCGCC	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	365, 916
EarI	CTCTTC	2 cut(s)	365, 916
EciI	GGCGGA	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	741
Eco147I	AGGCCT	1 cut(s)	158
Eco32I	GATATC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	47
Eco81I	CCTNAGG	1 cut(s)	857
Eco88I	CYCGRG	1 cut(s)	704
EcoRII	CCWGG	4 cut(s)	48, 544, 598, 787
EcoRV	GATATC	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	741
EgeI	GGCGCC	1 cut(s)	252
EheI	GGCGCC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	741
FaeI	CATG	2 cut(s)	88, 650
FaiI	YATR	6 cut(s)	86, 151, 648, 690, 779, 795
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	2 cut(s)	84, 646
FauI	CCCGC	1 cut(s)	344
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	8 cut(s)	249, 254, 346, 349, 402, 405, 604, 612
FokI	GGATG	4 cut(s)	287, 561, 677, 758
Fsp4HI	GCNGC	8 cut(s)	249, 254, 346, 349, 402, 405, 604, 612
FspBI	CTAG	1 cut(s)	929
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	8 cut(s)	249, 254, 346, 349, 402, 405, 604, 612
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	3 cut(s)	83, 134, 158
HapII	CCGG	4 cut(s)	37, 98, 110, 272
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	253
Hin1I	GRCGYC	1 cut(s)	251
Hin1II	CATG	2 cut(s)	88, 650
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HincII	GTYRAC	4 cut(s)	10, 33, 115, 696
HindII	GTYRAC	4 cut(s)	10, 33, 115, 696
HinfI	GANTC	1 cut(s)	364
HpaI	GTTAAC	1 cut(s)	696
HpaII	CCGG	4 cut(s)	37, 98, 110, 272
HphI	GGTGA	2 cut(s)	814, 944
Hpy166II	GTNNAC	6 cut(s)	10, 33, 115, 205, 634, 696
Hpy188I	TCNGA	7 cut(s)	27, 192, 268, 369, 735, 913, 918
Hpy188III	TCNNGA	6 cut(s)	477, 488, 578, 658, 772, 859
Hpy8I	GTNNAC	6 cut(s)	10, 33, 115, 205, 634, 696
Hpy99I	CGWCG	2 cut(s)	203, 632
HpyAV	CCTTC	6 cut(s)	58, 388, 453, 550, 577, 744
HpyCH4III	ACNGT	2 cut(s)	484, 514
HpyCH4IV	ACGT	3 cut(s)	57, 201, 572
HpyCH4V	TGCA	1 cut(s)	611
HpyF3I	CTNAG	5 cut(s)	170, 564, 857, 893, 917
HpySE526I	ACGT	3 cut(s)	57, 201, 572
Hsp92I	GRCGYC	1 cut(s)	251
Hsp92II	CATG	2 cut(s)	88, 650
HspAI	GCGC	1 cut(s)	251
KasI	GGCGCC	1 cut(s)	250
KspAI	GTTAAC	1 cut(s)	696
LguI	GCTCTTC	1 cut(s)	365
LmnI	GCTCC	2 cut(s)	268, 452
Lsp1109I	GCAGC	2 cut(s)	615, 623
MaeI	CTAG	1 cut(s)	929
MaeII	ACGT	3 cut(s)	57, 201, 572
MbiI	CCGCTC	1 cut(s)	375
MboII	GAAGA	6 cut(s)	73, 343, 382, 403, 565, 933
MflI	RGATCY	5 cut(s)	192, 439, 616, 835, 908
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	1 cut(s)	493
MluNI	TGGCCA	1 cut(s)	83
Mly113I	GGCGCC	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	1 cut(s)	246
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	4 cut(s)	285, 327, 527, 695
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	4 cut(s)	37, 98, 110, 272
MspR9I	CCNGG	7 cut(s)	37, 50, 98, 110, 546, 600, 789
Mva1269I	GAATGC	1 cut(s)	825
MvaI	CCWGG	4 cut(s)	50, 546, 600, 789
MvnI	CGCG	1 cut(s)	44
NarI	GGCGCC	1 cut(s)	251
NciI	CCSGG	3 cut(s)	37, 98, 110
NlaIII	CATG	2 cut(s)	88, 650
NlaIV	GGNNCC	3 cut(s)	95, 252, 270
NmeAIII	GCCGAG	1 cut(s)	282
PaeR7I	CTCGAG	1 cut(s)	704
PceI	AGGCCT	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	365
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 633
PctI	GAATGC	1 cut(s)	825
PflMI	CCANNNNNTGG	1 cut(s)	90
PkrI	GCNGC	8 cut(s)	250, 255, 347, 350, 403, 406, 605, 613
PleI	GAGTC	1 cut(s)	372
PluTI	GGCGCC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	372
Psp6I	CCWGG	4 cut(s)	48, 544, 598, 787
PspGI	CCWGG	4 cut(s)	48, 544, 598, 787
PspN4I	GGNNCC	3 cut(s)	95, 252, 270
PspPI	GGNCC	1 cut(s)	301
PspXI	VCTCGAGB	1 cut(s)	704
PstI	CTGCAG	1 cut(s)	613
PsuI	RGATCY	5 cut(s)	192, 439, 616, 835, 908
RsaI	GTAC	3 cut(s)	71, 206, 562
RsaNI	GTAC	3 cut(s)	70, 205, 561
SalI	GTCGAC	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	365
SaqAI	TTAA	4 cut(s)	285, 327, 527, 695
SatI	GCNGC	8 cut(s)	249, 254, 346, 349, 402, 405, 604, 612
Sau96I	GGNCC	1 cut(s)	301
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	7 cut(s)	37, 50, 98, 110, 546, 600, 789
SfcI	CTRYAG	1 cut(s)	609
SfoI	GGCGCC	1 cut(s)	252
Sfr274I	CTCGAG	1 cut(s)	704
SinI	GGWCC	1 cut(s)	301
SlaI	CTCGAG	1 cut(s)	704
SmlI	CTYRAG	1 cut(s)	704
SmoI	CTYRAG	1 cut(s)	704
Sse9I	AATT	1 cut(s)	493
SseBI	AGGCCT	1 cut(s)	158
SspDI	GGCGCC	1 cut(s)	250
SspMI	CTAG	1 cut(s)	929
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	7 cut(s)	35, 48, 96, 108, 544, 598, 787
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	2 cut(s)	484, 514
TaiI	ACGT	3 cut(s)	60, 204, 575
TaqI	TCGA	5 cut(s)	114, 297, 476, 684, 705
TasI	AATT	1 cut(s)	493
TauI	GCSGC	6 cut(s)	251, 256, 348, 351, 404, 407
Tru1I	TTAA	4 cut(s)	285, 327, 527, 695
Tru9I	TTAA	4 cut(s)	285, 327, 527, 695
TscAI	CASTG	1 cut(s)	721
TseI	GCWGC	2 cut(s)	603, 611
TspDTI	ATGAA	2 cut(s)	101, 715
TspRI	CASTG	1 cut(s)	721
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	301
XhoI	CTCGAG	1 cut(s)	704
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.