Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010653

Physical Location & Seq

Genomic Coordinates Reverse (-)

4666025 .. 4667480

Gene Structure 1456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g07030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGGTGTGGATTTCTACAACGTGCTGAGAGTGAACCGGAACGCGACCCAGGAGGACCTGAAGAAGGCGTACAAGCGCCTGGCGATGAGGTGGCACCCCGACAAGAACCTGGTCGACAACGAGGAAGCGGAGGCCAAGTTCAAGCAGGTGTGCCAGGCGTACGATGTTCTCAGCGACCCGCAGCGGCGCCAGATCTACGACATCTACGGCGAGGAGGGGCTCAACTGCGGCGACCCGGATGACATTTTCGCCGAGTTTTTCGGCGGATCTGGCGGCGTTGGGGACAAGGTGTTCAAGAAGAGCAGTGTGAATGGCGAAGGGCGTAATGGTAATTTGAAGAGTAAGAAGGCTGCGGCGACAGAGAGCAAGTTGGTGTGCAGTTTGGAGGATCTTTACAGGGGGGCGAGGAGGAAGATGAGGATTTCGAGAACTGTTCCTGATGGGTTCGGTAAGCCAAAGACTATTGAGGAAATCCTAAAGATAGACATCAAGCCTGGCTGGAAGAAGGGTACAAAGATCACATTCCCAGAGAGAGGAAACCAAGAGCCGGGCTTCTCTCCGGCTGATCTCATCTTCGTCATCGACGAGAAACCCCACCCTCATTTCAAGAGGGATGGGAATGACCTTGTGGTCACTCAGAAATTATCCCTACTAGAGGCTCTCACCGCGGCGGTCGTCAATCTGACAACGTTGGACGGAAGGGTTCTCAAGATCCCGGTGAGAGACATAATCAAACCTGGCCATGAGGAGGTGGTTGCTAATGAGGGAATGCCCATCTCTAAAGATCCGACCAAGAAAGGAAACCTTAGGGTCAAGTTCAACGTCGTCTTTCCGGCGAAGCTCAGTGCAGAACAGAAGGATGGTCTGAGGAGAGTGCTGGGTGGAGGTGATACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

299

Amino Acids

33.18

Weight (kDa)

9.2

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10350 AT1G59725
fragaria_vesca	FvH4_4g35640
malus_domestica	MD13G1081500.v1.1 MD13G1218800.v1.1 MD16G1080500.v1.1
prunus_persica	Prupe.1G265500_v2.0.a1 Prupe.1G265500_v2.0.a1
pyrus_communis	pycom13g07030 pycom16g06970
rosa_chinensis	RchiOBHm_Chr4g0445261
rosa_laevigata	RLG00000005754
rosa_multiflora	Rmu_sc0000050.1_g000026
rosa_roxburghii	Rroxscaffold_5G00385770
rosa_rugosa	Rorug04G0360000
rosa_samantha	Rh4AG421300 Rh4BG433200 Rh4CG447900 Rh4DG429300
rosa_wichuraiana	Rw4G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	136
AasI	GACNNNNNNGTC	1 cut(s)	629
Acc36I	ACCTGC	1 cut(s)	136
AccB1I	GGYRCC	2 cut(s)	93, 186
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	2 cut(s)	44, 668
AclI	AACGTT	1 cut(s)	689
AclWI	GGATC	4 cut(s)	274, 396, 706, 779
AcoI	YGGCCR	1 cut(s)	739
AcuI	CTGAAG	1 cut(s)	80
AcyI	GRCGYC	1 cut(s)	187
AfaI	GTAC	3 cut(s)	71, 161, 511
AfiI	CCNNNNNNNGG	5 cut(s)	64, 533, 547, 655, 748
AgsI	TTSAA	5 cut(s)	142, 295, 337, 607, 820
AjnI	CCWGG	6 cut(s)	48, 78, 108, 153, 493, 736
AloI	GAACNNNNNNTCC	4 cut(s)	122, 154, 275, 307
AluBI	AGCT	1 cut(s)	841
AluI	AGCT	1 cut(s)	841
Alw26I	GTCTC	1 cut(s)	717
AlwI	GGATC	4 cut(s)	274, 396, 706, 779
AoxI	GGCC	2 cut(s)	132, 739
ApeKI	GCWGC	2 cut(s)	181, 350
AspLEI	GCGC	2 cut(s)	78, 189
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	3 cut(s)	236, 549, 716
AsuHPI	GGTGA	2 cut(s)	655, 730
AvaII	GGWCC	1 cut(s)	55
AxyI	CCTNAGG	1 cut(s)	806
BalI	TGGCCA	1 cut(s)	741
BanI	GGYRCC	2 cut(s)	93, 186
BanII	GRGCYC	1 cut(s)	222
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbvI	GCAGC	2 cut(s)	193, 337
BccI	CCATC	4 cut(s)	434, 608, 782, 854
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	6 cut(s)	50, 80, 110, 155, 495, 738
BcnI	CCSGG	3 cut(s)	236, 549, 716
BcoDI	GTCTC	1 cut(s)	717
BfaI	CTAG	1 cut(s)	653
BfoI	RGCGCY	2 cut(s)	79, 190
BfuAI	ACCTGC	1 cut(s)	136
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	7 cut(s)	182, 185, 229, 274, 351, 354, 669
BlsI	GCNGC	7 cut(s)	183, 186, 230, 275, 352, 355, 670
Bme1390I	CCNGG	9 cut(s)	50, 80, 110, 155, 236, 495, 549, 716, 738
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	2 cut(s)	95, 188
BmrFI	CCNGG	9 cut(s)	50, 80, 110, 155, 236, 495, 549, 716, 738
BpuEI	CTTGAG	1 cut(s)	692
BpuMI	CCSGG	3 cut(s)	236, 549, 716
BsaBI	GATNNNNATC	1 cut(s)	485
BsaHI	GRCGYC	1 cut(s)	187
BsaJI	CCNNGG	2 cut(s)	48, 666
BsaWI	WCCGGW	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	5 cut(s)	64, 533, 547, 655, 748
Bse21I	CCTNAGG	1 cut(s)	806
Bse8I	GATNNNNATC	1 cut(s)	485
BseBI	CCWGG	6 cut(s)	50, 80, 110, 155, 495, 738
BseDI	CCNNGG	2 cut(s)	48, 666
BseGI	GGATG	3 cut(s)	244, 619, 865
BseJI	GATNNNNATC	1 cut(s)	485
BseLI	CCNNNNNNNGG	5 cut(s)	64, 533, 547, 655, 748
BseMII	CTCAG	5 cut(s)	17, 184, 650, 856, 857
BseRI	GAGGAG	4 cut(s)	227, 421, 761, 883
BseXI	GCAGC	2 cut(s)	193, 337
BseYI	CCCAGC	1 cut(s)	877
BsgI	GTGCAG	2 cut(s)	397, 867
Bsh1236I	CGCG	2 cut(s)	44, 668
Bsh1285I	CGRYCG	1 cut(s)	675
BshFI	GGCC	2 cut(s)	134, 741
BshNI	GGYRCC	2 cut(s)	93, 186
BsiEI	CGRYCG	1 cut(s)	675
BsiSI	CCGG	6 cut(s)	37, 236, 548, 560, 716, 833
BsiWI	CGTACG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	5 cut(s)	64, 533, 547, 655, 748
BsmAI	GTCTC	1 cut(s)	717
BsmFI	GGGAC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	774
BsnI	GGCC	2 cut(s)	134, 741
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	7 cut(s)	192, 266, 388, 516, 565, 711, 784
BspANI	GGCC	2 cut(s)	134, 741
BspCNI	CTCAG	5 cut(s)	18, 183, 649, 855, 858
BspFNI	CGCG	2 cut(s)	44, 668
BspLI	GGNNCC	2 cut(s)	95, 188
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	4 cut(s)	274, 396, 706, 779
BspQI	GCTCTTC	1 cut(s)	293
BspT107I	GGYRCC	2 cut(s)	93, 186
BssECI	CCNNGG	2 cut(s)	48, 666
BssMI	GATC	7 cut(s)	192, 266, 388, 516, 565, 711, 784
BssNI	GRCGYC	1 cut(s)	187
Bst2UI	CCWGG	6 cut(s)	50, 80, 110, 155, 495, 738
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	2 cut(s)	293, 332
BstACI	GRCGYC	1 cut(s)	187
BstDEI	CTNAG	6 cut(s)	26, 170, 636, 806, 842, 866
BstDSI	CCRYGG	1 cut(s)	666
BstENI	CCTNNNNNAGG	2 cut(s)	62, 653
BstF5I	GGATG	3 cut(s)	244, 619, 865
BstFNI	CGCG	2 cut(s)	44, 668
BstH2I	RGCGCY	2 cut(s)	79, 190
BstHHI	GCGC	2 cut(s)	78, 189
BstKTI	GATC	7 cut(s)	195, 269, 391, 519, 568, 714, 787
BstMAI	GTCTC	1 cut(s)	717
BstMBI	GATC	7 cut(s)	192, 266, 388, 516, 565, 711, 784
BstMCI	CGRYCG	1 cut(s)	675
BstMWI	GCNNNNNNNGC	2 cut(s)	270, 665
BstNI	CCWGG	6 cut(s)	50, 80, 110, 155, 495, 738
BstSCI	CCNGG	9 cut(s)	48, 78, 108, 153, 234, 493, 547, 714, 736
BstUI	CGCG	2 cut(s)	44, 668
BstV1I	GCAGC	2 cut(s)	193, 337
BstX2I	RGATCY	5 cut(s)	192, 266, 388, 711, 784
BstYI	RGATCY	5 cut(s)	192, 266, 388, 711, 784
Bsu36I	CCTNAGG	1 cut(s)	806
BsuRI	GGCC	2 cut(s)	134, 741
BtgI	CCRYGG	1 cut(s)	666
BtgZI	GCGATG	1 cut(s)	98
BtsCI	GGATG	3 cut(s)	244, 619, 865
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	2 cut(s)	310, 850
BveI	ACCTGC	1 cut(s)	136
CfoI	GCGC	2 cut(s)	78, 189
Cfr13I	GGNCC	1 cut(s)	55
Cfr42I	CCGCGG	1 cut(s)	669
CsiI	ACCWGGT	1 cut(s)	108
Csp6I	GTAC	3 cut(s)	70, 160, 510
CviAII	CATG	1 cut(s)	743
CviQI	GTAC	3 cut(s)	70, 160, 510
DdeI	CTNAG	6 cut(s)	26, 170, 636, 806, 842, 866
DinI	GGCGCC	1 cut(s)	188
DpnI	GATC	7 cut(s)	194, 268, 390, 518, 567, 713, 786
DpnII	GATC	7 cut(s)	192, 266, 388, 516, 565, 711, 784
DrdI	GACNNNNNNGTC	1 cut(s)	629
DseDI	GACNNNNNNGTC	1 cut(s)	629
EaeI	YGGCCR	1 cut(s)	739
Eam1104I	CTCTTC	2 cut(s)	293, 332
EarI	CTCTTC	2 cut(s)	293, 332
EciI	GGCGGA	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	80
Eco81I	CCTNAGG	1 cut(s)	806
EcoNI	CCTNNNNNAGG	2 cut(s)	62, 653
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRII	CCWGG	6 cut(s)	48, 78, 108, 153, 493, 736
EcoT38I	GRGCYC	1 cut(s)	222
EgeI	GGCGCC	1 cut(s)	188
EheI	GGCGCC	1 cut(s)	188
FaeI	CATG	1 cut(s)	746
FaiI	YATR	2 cut(s)	728, 744
FalI	AAGNNNNNCTT	2 cut(s)	789, 821
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	1 cut(s)	742
FauI	CCCGC	1 cut(s)	186
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	7 cut(s)	182, 185, 229, 274, 351, 354, 669
FokI	GGATG	3 cut(s)	251, 626, 872
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	7 cut(s)	182, 185, 229, 274, 351, 354, 669
FspBI	CTAG	1 cut(s)	653
GlaI	GCGC	2 cut(s)	77, 188
GluI	GCNGC	7 cut(s)	182, 185, 229, 274, 351, 354, 669
GsaI	CCCAGC	1 cut(s)	881
HaeII	RGCGCY	2 cut(s)	79, 190
HaeIII	GGCC	2 cut(s)	134, 741
HapII	CCGG	6 cut(s)	37, 236, 548, 560, 716, 833
HhaI	GCGC	2 cut(s)	78, 189
Hin1I	GRCGYC	1 cut(s)	187
Hin1II	CATG	1 cut(s)	746
Hin6I	GCGC	2 cut(s)	76, 187
HinP1I	GCGC	2 cut(s)	76, 187
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HpaII	CCGG	6 cut(s)	37, 236, 548, 560, 716, 833
HphI	GGTGA	2 cut(s)	655, 730
Hpy166II	GTNNAC	2 cut(s)	34, 115
Hpy188I	TCNGA	4 cut(s)	639, 684, 789, 867
Hpy188III	TCNNGA	5 cut(s)	295, 426, 437, 607, 709
Hpy8I	GTNNAC	2 cut(s)	34, 115
Hpy99I	CGWCG	2 cut(s)	587, 827
HpyAV	CCTTC	6 cut(s)	58, 311, 340, 499, 693, 850
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4IV	ACGT	3 cut(s)	21, 689, 822
HpyCH4V	TGCA	2 cut(s)	378, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	270, 665
HpyF3I	CTNAG	6 cut(s)	26, 170, 636, 806, 842, 866
HpySE526I	ACGT	3 cut(s)	21, 689, 822
Hsp92I	GRCGYC	1 cut(s)	187
Hsp92II	CATG	1 cut(s)	746
HspAI	GCGC	2 cut(s)	76, 187
KasI	GGCGCC	1 cut(s)	186
KspI	CCGCGG	1 cut(s)	669
Kzo9I	GATC	7 cut(s)	192, 266, 388, 516, 565, 711, 784
LguI	GCTCTTC	1 cut(s)	293
Lsp1109I	GCAGC	2 cut(s)	193, 337
MabI	ACCWGGT	1 cut(s)	108
MaeI	CTAG	1 cut(s)	653
MaeII	ACGT	3 cut(s)	21, 689, 822
MaeIII	GTNAC	1 cut(s)	631
MalI	GATC	7 cut(s)	194, 268, 390, 518, 567, 713, 786
MboI	GATC	7 cut(s)	192, 266, 388, 516, 565, 711, 784
MboII	GAAGA	6 cut(s)	73, 310, 349, 424, 514, 565
MflI	RGATCY	5 cut(s)	192, 266, 388, 711, 784
MhlI	GDGCHC	1 cut(s)	222
MlsI	TGGCCA	1 cut(s)	741
MluCI	AATT	2 cut(s)	331, 641
MluNI	TGGCCA	1 cut(s)	741
Mly113I	GGCGCC	1 cut(s)	187
MmeI	TCCRAC	2 cut(s)	672, 812
Mox20I	TGGCCA	1 cut(s)	741
MscI	TGGCCA	1 cut(s)	741
Msp20I	TGGCCA	1 cut(s)	741
MspA1I	CMGCKG	2 cut(s)	184, 668
MspI	CCGG	6 cut(s)	37, 236, 548, 560, 716, 833
MspR9I	CCNGG	9 cut(s)	50, 80, 110, 155, 236, 495, 549, 716, 738
Mva1269I	GAATGC	1 cut(s)	774
MvaI	CCWGG	6 cut(s)	50, 80, 110, 155, 495, 738
MvnI	CGCG	2 cut(s)	44, 668
MwoI	GCNNNNNNNGC	2 cut(s)	270, 665
NarI	GGCGCC	1 cut(s)	187
NciI	CCSGG	3 cut(s)	236, 549, 716
NdeII	GATC	7 cut(s)	192, 266, 388, 516, 565, 711, 784
NlaIII	CATG	1 cut(s)	746
NlaIV	GGNNCC	2 cut(s)	95, 188
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	631
PaqCI	CACCTGC	1 cut(s)	136
PciSI	GCTCTTC	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	1 cut(s)	582
PctI	GAATGC	1 cut(s)	774
Pfl23II	CGTACG	1 cut(s)	159
PkrI	GCNGC	7 cut(s)	183, 186, 230, 275, 352, 355, 670
PluTI	GGCGCC	1 cut(s)	190
PpuMI	RGGWCCY	1 cut(s)	55
Psp1406I	AACGTT	1 cut(s)	689
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	6 cut(s)	48, 78, 108, 153, 493, 736
PspFI	CCCAGC	1 cut(s)	877
PspGI	CCWGG	6 cut(s)	48, 78, 108, 153, 493, 736
PspLI	CGTACG	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	95, 188
PspPI	GGNCC	1 cut(s)	55
PspPPI	RGGWCCY	1 cut(s)	55
PsuI	RGATCY	5 cut(s)	192, 266, 388, 711, 784
RsaI	GTAC	3 cut(s)	71, 161, 511
RsaNI	GTAC	3 cut(s)	70, 160, 510
SacII	CCGCGG	1 cut(s)	669
SalI	GTCGAC	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	293
SatI	GCNGC	7 cut(s)	182, 185, 229, 274, 351, 354, 669
Sau3AI	GATC	7 cut(s)	192, 266, 388, 516, 565, 711, 784
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	9 cut(s)	50, 80, 110, 155, 236, 495, 549, 716, 738
SduI	GDGCHC	1 cut(s)	222
SexAI	ACCWGGT	1 cut(s)	108
SfoI	GGCGCC	1 cut(s)	188
Sfr303I	CCGCGG	1 cut(s)	669
SgrBI	CCGCGG	1 cut(s)	669
SinI	GGWCC	1 cut(s)	55
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
Sse9I	AATT	2 cut(s)	331, 641
SspDI	GGCGCC	1 cut(s)	186
SspMI	CTAG	1 cut(s)	653
StyD4I	CCNGG	9 cut(s)	48, 78, 108, 153, 234, 493, 547, 714, 736
TaaI	ACNGT	1 cut(s)	433
TaiI	ACGT	3 cut(s)	24, 692, 825
TaqI	TCGA	3 cut(s)	114, 425, 582
TasI	AATT	2 cut(s)	331, 641
TauI	GCSGC	5 cut(s)	187, 231, 276, 356, 671
TscAI	CASTG	2 cut(s)	310, 850
TseFI	GTSAC	1 cut(s)	631
TseI	GCWGC	2 cut(s)	181, 350
Tsp45I	GTSAC	1 cut(s)	631
TspGWI	ACGGA	1 cut(s)	711
TspRI	CASTG	2 cut(s)	310, 850
VpaK11BI	GGWCC	1 cut(s)	55
XagI	CCTNNNNNAGG	2 cut(s)	62, 653
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.