Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010653

Physical Location & Seq

Genomic Coordinates Forward (+)

27359512 .. 27363165

Gene Structure 3654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G265500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGGCGTGGACTTCTACAACGTGCTGAGAGTGAACCGGGACGCGACCCAGGAGGACCTGAAGAAGGCGTACAAGAGGTTGGCGATGAGGTGGCACCCGGACAAGAACCCAGTTGACAACGAAGGAGCAGAGGCCAAGTTCAAGCAAGTTTGCCAGGCCTACGATGTCCTCAGCGACCCCCAGAGGCGTCAGATCTATGACATCTACGGCGAGGAAGGGCTCAATTATGGTGACCCAGATGATATTTTTGCCGAGTTCTTCGGCGGATCTGGGGACAGAGACAGGGTGTTTAAGAAGAAGAATAGCCTTAATGGTAGTTATGGCGGTGGCGGTGGAGGGAAAAGTAAGAAGCTTGCGGCGATTGAGAGTAAGTTGGTGTGTAGTTTGGAGGATTTGTACAAAGGGACCAGAAGGAAGATGAGGATTTCAAGAACTGTTCCTGATGAATTTGGTAAGCCGAAGACAGTTGAGGAAATCTTAAAGATAGACATCAAGCCTGGTTGGAAGAAGGGTACGAAAATCACCTTCCCAGATAAAGGCAACCAAGAACCAGGAGTCTCTCCAGCAGATCTTATATTCGTGGTCGATGAAAAACCCCACGGTGTTTTTAAGAGGGATGGGAATGACCTTGTGGTCACTCAGGAGTTATCTCTACTCGAGGCTCTCACGGGGACTTTCGTCAATCTGACAACCTTAGACGGAAGGATTCTGATGATCCCAGTGAGAGATATAATTAAACCTGGTCATGAGGAATTGATCCCTAATGAGGGAATGCCCATCTCAAAAGATCCCACCAAGAAAGGAAACCTCAGGATCAAGTTTGACGTCGTCTTTCCATCGAAGCTGAGTGTAGAACAGAAAAGTGATCTGAGACGGGTGCTTGGTCGAGCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

299

Amino Acids

33.43

Weight (kDa)

8.92

Isoelectric Point (pI)

34.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10350 AT1G59725
fragaria_vesca	FvH4_4g35640
malus_domestica	MD13G1081500.v1.1 MD13G1218800.v1.1 MD16G1080500.v1.1
prunus_persica	Prupe.1G265500_v2.0.a1 Prupe.1G265500_v2.0.a1
pyrus_communis	pycom13g07030 pycom16g06970
rosa_chinensis	RchiOBHm_Chr4g0445261
rosa_laevigata	RLG00000005754
rosa_multiflora	Rmu_sc0000050.1_g000026
rosa_roxburghii	Rroxscaffold_5G00385770
rosa_rugosa	Rorug04G0360000
rosa_samantha	Rh4AG421300 Rh4BG433200 Rh4CG447900 Rh4DG429300
rosa_wichuraiana	Rw4G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	632
AatII	GACGTC	1 cut(s)	828
AccB1I	GGYRCC	1 cut(s)	93
AccII	CGCG	1 cut(s)	44
AciI	CCGC	4 cut(s)	264, 324, 330, 356
AclWI	GGATC	5 cut(s)	274, 709, 751, 782, 821
AcsI	RAATTY	1 cut(s)	446
AcuI	CTGAAG	1 cut(s)	80
AcyI	GRCGYC	2 cut(s)	187, 825
AfaI	GTAC	3 cut(s)	71, 398, 514
AfiI	CCNNNNNNNGG	4 cut(s)	64, 536, 766, 767
AgsI	TTSAA	2 cut(s)	142, 429
AjnI	CCWGG	5 cut(s)	48, 153, 496, 550, 739
AluBI	AGCT	3 cut(s)	352, 844, 890
AluI	AGCT	3 cut(s)	352, 844, 890
Alw26I	GTCTC	3 cut(s)	273, 562, 865
AlwI	GGATC	5 cut(s)	274, 709, 751, 782, 821
Ama87I	CYCGRG	1 cut(s)	656
AoxI	GGCC	2 cut(s)	132, 156
ApoI	RAATTY	1 cut(s)	446
AspS9I	GGNCC	2 cut(s)	55, 405
AsuC2I	CCSGG	2 cut(s)	38, 98
AsuHPI	GGTGA	2 cut(s)	242, 514
AvaI	CYCGRG	1 cut(s)	656
AvaII	GGWCC	2 cut(s)	55, 405
AxyI	CCTNAGG	1 cut(s)	809
BanI	GGYRCC	1 cut(s)	93
BanII	GRGCYC	1 cut(s)	222
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbsI	GAAGAC	1 cut(s)	467
BbvCI	CCTCAGC	1 cut(s)	170
BccI	CCATC	3 cut(s)	611, 785, 844
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	5 cut(s)	50, 155, 498, 552, 741
BcnI	CCSGG	2 cut(s)	38, 98
BcoDI	GTCTC	3 cut(s)	273, 562, 865
BglII	AGATCT	2 cut(s)	192, 568
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
Bme1390I	CCNGG	7 cut(s)	38, 50, 98, 155, 498, 552, 741
Bme18I	GGWCC	2 cut(s)	55, 405
BmeT110I	CYCGRG	1 cut(s)	656
BmgT120I	GGNCC	2 cut(s)	55, 405
BmiI	GGNNCC	2 cut(s)	95, 406
BmrFI	CCNGG	7 cut(s)	38, 50, 98, 155, 498, 552, 741
BmrI	ACTGGG	2 cut(s)	104, 713
BmuI	ACTGGG	2 cut(s)	104, 713
BoxI	GACNNNNGTC	1 cut(s)	677
BpiI	GAAGAC	1 cut(s)	467
BpmI	CTGGAG	1 cut(s)	546
Bpu10I	CCTNAGC	1 cut(s)	170
BpuMI	CCSGG	2 cut(s)	38, 98
BsaBI	GATNNNNATC	1 cut(s)	488
BsaHI	GRCGYC	2 cut(s)	187, 825
BsaJI	CCNNGG	2 cut(s)	48, 598
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 536, 766, 767
Bse1I	ACTGG	2 cut(s)	110, 719
Bse21I	CCTNAGG	1 cut(s)	809
Bse8I	GATNNNNATC	1 cut(s)	488
BseBI	CCWGG	5 cut(s)	50, 155, 498, 552, 741
BseDI	CCNNGG	2 cut(s)	48, 598
BseGI	GGATG	1 cut(s)	622
BseJI	GATNNNNATC	1 cut(s)	488
BseLI	CCNNNNNNNGG	4 cut(s)	64, 536, 766, 767
BseMII	CTCAG	6 cut(s)	17, 184, 653, 823, 836, 860
BseNI	ACTGG	2 cut(s)	110, 719
Bsh1236I	CGCG	1 cut(s)	44
BshFI	GGCC	2 cut(s)	134, 158
BshNI	GGYRCC	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	656
BsiSI	CCGG	2 cut(s)	37, 98
BslFI	GGGAC	4 cut(s)	53, 287, 418, 685
BslI	CCNNNNNNNGG	4 cut(s)	64, 536, 766, 767
BsmAI	GTCTC	3 cut(s)	273, 562, 865
BsmBI	CGTCTC	1 cut(s)	865
BsmFI	GGGAC	4 cut(s)	53, 287, 418, 685
BsmI	GAATGC	1 cut(s)	777
BsnI	GGCC	2 cut(s)	134, 158
BsoBI	CYCGRG	1 cut(s)	656
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp1407I	TGTACA	1 cut(s)	396
Bsp143I	GATC	8 cut(s)	192, 266, 568, 714, 756, 787, 813, 865
BspACI	CCGC	4 cut(s)	264, 324, 330, 356
BspANI	GGCC	2 cut(s)	134, 158
BspCNI	CTCAG	6 cut(s)	18, 183, 652, 822, 837, 861
BspFNI	CGCG	1 cut(s)	44
BspHI	TCATGA	1 cut(s)	745
BspLI	GGNNCC	2 cut(s)	95, 406
BspPI	GGATC	5 cut(s)	274, 709, 751, 782, 821
BspT107I	GGYRCC	1 cut(s)	93
BsrGI	TGTACA	1 cut(s)	396
BsrI	ACTGG	2 cut(s)	110, 719
BssECI	CCNNGG	2 cut(s)	48, 598
BssMI	GATC	8 cut(s)	192, 266, 568, 714, 756, 787, 813, 865
BssNI	GRCGYC	2 cut(s)	187, 825
Bst2UI	CCWGG	5 cut(s)	50, 155, 498, 552, 741
Bst4CI	ACNGT	3 cut(s)	436, 466, 602
BstACI	GRCGYC	2 cut(s)	187, 825
BstAUI	TGTACA	1 cut(s)	396
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	7 cut(s)	26, 170, 639, 694, 809, 845, 869
BstDSI	CCRYGG	1 cut(s)	598
BstEII	GGTNACC	1 cut(s)	230
BstENI	CCTNNNNNAGG	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	622
BstFNI	CGCG	1 cut(s)	44
BstKTI	GATC	8 cut(s)	195, 269, 571, 717, 759, 790, 816, 868
BstMAI	GTCTC	3 cut(s)	273, 562, 865
BstMBI	GATC	8 cut(s)	192, 266, 568, 714, 756, 787, 813, 865
BstNI	CCWGG	5 cut(s)	50, 155, 498, 552, 741
BstPAI	GACNNNNGTC	1 cut(s)	677
BstPI	GGTNACC	1 cut(s)	230
BstSCI	CCNGG	7 cut(s)	36, 48, 96, 153, 496, 550, 739
BstUI	CGCG	1 cut(s)	44
BstV2I	GAAGAC	1 cut(s)	467
BstX2I	RGATCY	4 cut(s)	192, 266, 568, 787
BstYI	RGATCY	4 cut(s)	192, 266, 568, 787
Bsu36I	CCTNAGG	1 cut(s)	809
BsuRI	GGCC	2 cut(s)	134, 158
BtgI	CCRYGG	1 cut(s)	598
BtgZI	GCGATG	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	622
BtsIMutI	CAGTG	1 cut(s)	726
Cac8I	GCNNGC	1 cut(s)	354
CciI	TCATGA	1 cut(s)	745
Cfr13I	GGNCC	2 cut(s)	55, 405
CseI	GACGC	2 cut(s)	50, 176
CsiI	ACCWGGT	1 cut(s)	739
Csp6I	GTAC	3 cut(s)	70, 397, 513
CviAII	CATG	1 cut(s)	746
CviQI	GTAC	3 cut(s)	70, 397, 513
DdeI	CTNAG	7 cut(s)	26, 170, 639, 694, 809, 845, 869
DpnI	GATC	8 cut(s)	194, 268, 570, 716, 758, 789, 815, 867
DpnII	GATC	8 cut(s)	192, 266, 568, 714, 756, 787, 813, 865
DrdI	GACNNNNNNGTC	1 cut(s)	632
DseDI	GACNNNNNNGTC	1 cut(s)	632
EciI	GGCGGA	1 cut(s)	279
Eco147I	AGGCCT	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	2 cut(s)	55, 405
Eco57I	CTGAAG	1 cut(s)	80
Eco81I	CCTNAGG	1 cut(s)	809
Eco88I	CYCGRG	1 cut(s)	656
Eco91I	GGTNACC	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	230
EcoRII	CCWGG	5 cut(s)	48, 153, 496, 550, 739
EcoT38I	GRGCYC	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	865
FaeI	CATG	1 cut(s)	749
FaiI	YATR	6 cut(s)	198, 228, 321, 575, 731, 747
FaqI	GGGAC	4 cut(s)	53, 287, 418, 685
FatI	CATG	1 cut(s)	745
Fnu4HI	GCNGC	1 cut(s)	357
FokI	GGATG	1 cut(s)	629
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	357
GluI	GCNGC	1 cut(s)	357
GsuI	CTGGAG	1 cut(s)	546
HaeIII	GGCC	2 cut(s)	134, 158
HapII	CCGG	2 cut(s)	37, 98
HgaI	GACGC	2 cut(s)	50, 176
Hin1I	GRCGYC	2 cut(s)	187, 825
Hin1II	CATG	1 cut(s)	749
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	2 cut(s)	555, 706
HpaII	CCGG	2 cut(s)	37, 98
HphI	GGTGA	2 cut(s)	242, 514
Hpy166II	GTNNAC	3 cut(s)	10, 34, 115
Hpy188I	TCNGA	4 cut(s)	192, 687, 711, 870
Hpy188III	TCNNGA	5 cut(s)	429, 440, 641, 746, 811
Hpy8I	GTNNAC	3 cut(s)	10, 34, 115
Hpy99I	CGWCG	1 cut(s)	830
HpyAV	CCTTC	7 cut(s)	58, 116, 209, 405, 502, 535, 696
HpyCH4III	ACNGT	3 cut(s)	436, 466, 602
HpyCH4IV	ACGT	2 cut(s)	21, 825
HpyF3I	CTNAG	7 cut(s)	26, 170, 639, 694, 809, 845, 869
HpySE526I	ACGT	2 cut(s)	21, 825
Hsp92I	GRCGYC	2 cut(s)	187, 825
Hsp92II	CATG	1 cut(s)	749
Kzo9I	GATC	8 cut(s)	192, 266, 568, 714, 756, 787, 813, 865
LmnI	GCTCC	1 cut(s)	125
MabI	ACCWGGT	1 cut(s)	739
MaeII	ACGT	2 cut(s)	21, 825
MaeIII	GTNAC	2 cut(s)	230, 634
MalI	GATC	8 cut(s)	194, 268, 570, 716, 758, 789, 815, 867
MboI	GATC	8 cut(s)	192, 266, 568, 714, 756, 787, 813, 865
MboII	GAAGA	7 cut(s)	73, 250, 307, 310, 427, 472, 517
MflI	RGATCY	4 cut(s)	192, 266, 568, 787
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	4 cut(s)	223, 446, 732, 752
MlyI	GAGTC	1 cut(s)	564
MmeI	TCCRAC	1 cut(s)	482
MseI	TTAA	6 cut(s)	291, 309, 479, 609, 735, 895
MspI	CCGG	2 cut(s)	37, 98
MspR9I	CCNGG	7 cut(s)	38, 50, 98, 155, 498, 552, 741
Mva1269I	GAATGC	1 cut(s)	777
MvaI	CCWGG	5 cut(s)	50, 155, 498, 552, 741
MvnI	CGCG	1 cut(s)	44
NciI	CCSGG	2 cut(s)	38, 98
NdeII	GATC	8 cut(s)	192, 266, 568, 714, 756, 787, 813, 865
NlaIII	CATG	1 cut(s)	749
NlaIV	GGNNCC	2 cut(s)	95, 406
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	2 cut(s)	230, 634
PaeR7I	CTCGAG	1 cut(s)	656
PagI	TCATGA	1 cut(s)	745
PceI	AGGCCT	1 cut(s)	158
PctI	GAATGC	1 cut(s)	777
PfeI	GAWTC	1 cut(s)	706
PflFI	GACNNNGTC	1 cut(s)	827
PkrI	GCNGC	1 cut(s)	358
PleI	GAGTC	1 cut(s)	563
PpsI	GAGTC	1 cut(s)	563
PpuMI	RGGWCCY	1 cut(s)	55
PshAI	GACNNNNGTC	1 cut(s)	677
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	5 cut(s)	48, 153, 496, 550, 739
PspEI	GGTNACC	1 cut(s)	230
PspGI	CCWGG	5 cut(s)	48, 153, 496, 550, 739
PspN4I	GGNNCC	2 cut(s)	95, 406
PspPI	GGNCC	2 cut(s)	55, 405
PspPPI	RGGWCCY	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	656
PsuI	RGATCY	4 cut(s)	192, 266, 568, 787
PsyI	GACNNNGTC	1 cut(s)	827
RsaI	GTAC	3 cut(s)	71, 398, 514
RsaNI	GTAC	3 cut(s)	70, 397, 513
SaqAI	TTAA	6 cut(s)	291, 309, 479, 609, 735, 895
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	8 cut(s)	192, 266, 568, 714, 756, 787, 813, 865
Sau96I	GGNCC	2 cut(s)	55, 405
SchI	GAGTC	1 cut(s)	564
ScrFI	CCNGG	7 cut(s)	38, 50, 98, 155, 498, 552, 741
SduI	GDGCHC	1 cut(s)	222
SexAI	ACCWGGT	1 cut(s)	739
Sfr274I	CTCGAG	1 cut(s)	656
SinI	GGWCC	2 cut(s)	55, 405
SlaI	CTCGAG	1 cut(s)	656
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
Sse9I	AATT	4 cut(s)	223, 446, 732, 752
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	4 cut(s)	264, 324, 330, 356
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	7 cut(s)	36, 48, 96, 153, 496, 550, 739
TaaI	ACNGT	3 cut(s)	436, 466, 602
TaiI	ACGT	2 cut(s)	24, 828
TaqI	TCGA	4 cut(s)	585, 657, 839, 886
TasI	AATT	4 cut(s)	223, 446, 732, 752
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	1 cut(s)	706
Tru1I	TTAA	6 cut(s)	291, 309, 479, 609, 735, 895
Tru9I	TTAA	6 cut(s)	291, 309, 479, 609, 735, 895
TscAI	CASTG	1 cut(s)	726
TseFI	GTSAC	2 cut(s)	230, 634
Tsp45I	GTSAC	2 cut(s)	230, 634
TspDTI	ATGAA	2 cut(s)	459, 603
TspGWI	ACGGA	1 cut(s)	714
TspRI	CASTG	1 cut(s)	726
Tth111I	GACNNNGTC	1 cut(s)	827
VpaK11BI	GGWCC	2 cut(s)	55, 405
XagI	CCTNNNNNAGG	1 cut(s)	62
XapI	RAATTY	1 cut(s)	446
XhoI	CTCGAG	1 cut(s)	656
ZraI	GACGTC	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.