Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010653

Physical Location & Seq

Genomic Coordinates Forward (+)

21950503 .. 21952491

Gene Structure 1989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G59725.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGGGGTTGATTACTACAATGTACTCAACGTGAATCCAAGCGCAACGGAAGACGATCTAAAGAAATCGTATCGAAGACTTGCAATGAAATGGCACCCTGACAAAAACCCTACTTCAATCAAGCAAGAAGCTGAAGCTAAGTTCAAACAAATCTCCGAAGCTTACGATGTTTTAAGCGATCCTAACAAACGTCAGATCTATGATCAATATGGTGAAGACGGACTTACGGCGACAGAAGCAACGGCGTCGTCTCAACAACATAATTACTCTTCTGGTAACAACAATAATTACAATGCAGGGTTTAGGTATTATCCACGTGATGCTGAAGATATTTTCGCTGAGTTTTTCGGTGCATCTGAGAAAGTCTTTGATGGTGGCGTCGGCGGTGGCGGGAGGTTTAAAAGTGCGGAGGCGGGAAGTCAGACGAATAGGAAAACTCCGGTGAACAGGAAAGCTCCGGCGATTGAGAGTAAATTGGCTTGTACTCTTGAGGAGTTGTATAAAGGTGGGAGGAGGAAGATGAAGATTTCCCGCGTTGTTCCTGATGGTCTTGGAAAGTCAAAGCCAGTGGAAGAGATCTTGAAGATAGATATAACACCAGGATGGAAGAAAGGAACTAAGATAACTTTTCCAGAGAAAGGAAACCAAGAACCCGGTGTTACTCCCGCAGATCTCATCTTTGTTATAGATGAGAAACCGCATTCGGTTTACAAAAGAGACGGTAACGATCTTATTGTAGACAAGAAAGTTTCGCTTTTGGAGGCTTTAACAGGGATCACTCTTAGCTTAACAACACTAGACGGGAGGAATCTGACTATCCCGGTTTTGGATATCGTTAAACCGGGTCAGGAGATAGTGATTCCTAGTGAAGGAATGCCCATCTCTAAAGAAGGTTCAAAGAGAGGAGATCTAAGAATCAACTTTGAGATATGTTTCCCCTCGAGGCTAACATCGGAACAGAAGACAGATCTCAAGAGAGTTCTTGGTGGTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

331

Amino Acids

36.61

Weight (kDa)

8.55

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 68	1.2e-26	DnaJ domain
DnaJ_C	PF01556	155 - 313	1.4e-39	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10350 AT1G59725
fragaria_vesca	FvH4_4g35640
malus_domestica	MD13G1081500.v1.1 MD13G1218800.v1.1 MD16G1080500.v1.1
prunus_persica	Prupe.1G265500_v2.0.a1 Prupe.1G265500_v2.0.a1
pyrus_communis	pycom13g07030 pycom16g06970
rosa_chinensis	RchiOBHm_Chr4g0445261
rosa_laevigata	RLG00000005754
rosa_multiflora	Rmu_sc0000050.1_g000026
rosa_roxburghii	Rroxscaffold_5G00385770
rosa_rugosa	Rorug04G0360000
rosa_samantha	Rh4AG421300 Rh4BG433200 Rh4CG447900 Rh4DG429300
rosa_wichuraiana	Rw4G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	940
AccB1I	GGYRCC	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	738
AccII	CGCG	1 cut(s)	534
AciI	CCGC	7 cut(s)	384, 390, 407, 413, 532, 666, 698
AclWI	GGATC	2 cut(s)	173, 782
AcuI	CTGAAG	2 cut(s)	153, 345
AcvI	CACGTG	1 cut(s)	317
AcyI	GRCGYC	2 cut(s)	245, 378
AfaI	GTAC	2 cut(s)	24, 484
AfiI	CCNNNNNNNGG	3 cut(s)	638, 826, 869
AgsI	TTSAA	4 cut(s)	117, 145, 583, 897
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	6 cut(s)	131, 137, 161, 455, 786, 993
AluI	AGCT	6 cut(s)	131, 137, 161, 455, 786, 993
Alw26I	GTCTC	2 cut(s)	255, 711
AlwI	GGATC	2 cut(s)	173, 782
Ama87I	CYCGRG	1 cut(s)	940
AspLEI	GCGC	1 cut(s)	44
AsuC2I	CCSGG	3 cut(s)	654, 821, 843
AsuHPI	GGTGA	2 cut(s)	224, 454
AvaI	CYCGRG	1 cut(s)	940
BanI	GGYRCC	1 cut(s)	93
BbrPI	CACGTG	1 cut(s)	317
BbsI	GAAGAC	4 cut(s)	57, 82, 222, 968
BccI	CCATC	4 cut(s)	365, 539, 597, 887
BceAI	ACGGC	2 cut(s)	243, 258
BcgI	CGANNNNNNTGC	2 cut(s)	228, 262
BciT130I	CCWGG	1 cut(s)	600
BclI	TGATCA	1 cut(s)	202
BcnI	CCSGG	3 cut(s)	654, 821, 843
BcoDI	GTCTC	2 cut(s)	255, 711
BfaI	CTAG	2 cut(s)	797, 864
BglII	AGATCT	5 cut(s)	195, 576, 670, 907, 967
Bme1390I	CCNGG	4 cut(s)	600, 654, 821, 843
BmeT110I	CYCGRG	1 cut(s)	940
BmiI	GGNNCC	1 cut(s)	95
BmrFI	CCNGG	4 cut(s)	600, 654, 821, 843
BmsI	GCATC	2 cut(s)	310, 362
BpiI	GAAGAC	4 cut(s)	57, 82, 222, 968
BpuEI	CTTGAG	2 cut(s)	509, 956
BpuMI	CCSGG	3 cut(s)	654, 821, 843
BsaAI	YACGTR	1 cut(s)	317
BsaHI	GRCGYC	2 cut(s)	245, 378
BsaWI	WCCGGW	1 cut(s)	439
Bsc4I	CCNNNNNNNGG	3 cut(s)	638, 826, 869
Bse1I	ACTGG	1 cut(s)	566
Bse3DI	GCAATG	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	600
BseGI	GGATG	1 cut(s)	608
BseLI	CCNNNNNNNGG	3 cut(s)	638, 826, 869
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	2 cut(s)	330, 348
BseNI	ACTGG	1 cut(s)	566
BseRI	GAGGAG	3 cut(s)	506, 526, 918
Bsh1236I	CGCG	1 cut(s)	534
BshNI	GGYRCC	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	940
BsiSI	CCGG	5 cut(s)	440, 458, 654, 821, 842
BslI	CCNNNNNNNGG	3 cut(s)	638, 826, 869
BsmAI	GTCTC	2 cut(s)	255, 711
BsmBI	CGTCTC	2 cut(s)	255, 711
BsmI	GAATGC	2 cut(s)	700, 879
BsoBI	CYCGRG	1 cut(s)	940
BspACI	CCGC	7 cut(s)	384, 390, 407, 413, 532, 666, 698
BspCNI	CTCAG	2 cut(s)	331, 349
BspFNI	CGCG	1 cut(s)	534
BspLI	GGNNCC	1 cut(s)	95
BspPI	GGATC	2 cut(s)	173, 782
BspT107I	GGYRCC	1 cut(s)	93
BsrDI	GCAATG	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	566
BssNI	GRCGYC	2 cut(s)	245, 378
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	1 cut(s)	722
Bst6I	CTCTTC	2 cut(s)	274, 567
BstACI	GRCGYC	2 cut(s)	245, 378
BstBAI	YACGTR	1 cut(s)	317
BstDEI	CTNAG	6 cut(s)	138, 339, 357, 618, 782, 911
BstENI	CCTNNNNNAGG	1 cut(s)	867
BstF5I	GGATG	1 cut(s)	608
BstFNI	CGCG	1 cut(s)	534
BstHHI	GCGC	1 cut(s)	44
BstMAI	GTCTC	2 cut(s)	255, 711
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	600
BstSCI	CCNGG	4 cut(s)	598, 652, 819, 841
BstUI	CGCG	1 cut(s)	534
BstV2I	GAAGAC	4 cut(s)	57, 82, 222, 968
BstX2I	RGATCY	5 cut(s)	195, 576, 670, 907, 967
BstYI	RGATCY	5 cut(s)	195, 576, 670, 907, 967
BtsCI	GGATG	1 cut(s)	608
BtsIMutI	CAGTG	1 cut(s)	573
CfoI	GCGC	1 cut(s)	44
CseI	GACGC	2 cut(s)	234, 367
Csp6I	GTAC	2 cut(s)	23, 483
CspCI	CAANNNNNGTGG	2 cut(s)	549, 584
CviQI	GTAC	2 cut(s)	23, 483
DdeI	CTNAG	6 cut(s)	138, 339, 357, 618, 782, 911
DraI	TTTAAA	1 cut(s)	400
Eam1104I	CTCTTC	2 cut(s)	274, 567
EarI	CTCTTC	2 cut(s)	274, 567
Eco32I	GATATC	1 cut(s)	832
Eco57I	CTGAAG	2 cut(s)	153, 345
Eco72I	CACGTG	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	940
EcoNI	CCTNNNNNAGG	1 cut(s)	867
EcoRII	CCWGG	1 cut(s)	598
EcoRV	GATATC	1 cut(s)	832
Esp3I	CGTCTC	2 cut(s)	255, 711
FaiI	YATR	7 cut(s)	201, 210, 261, 501, 593, 686, 931
FalI	AAGNNNNNCTT	4 cut(s)	207, 239, 738, 770
FauI	CCCGC	4 cut(s)	383, 406, 539, 673
FbaI	TGATCA	1 cut(s)	202
FblI	GTMKAC	1 cut(s)	738
FokI	GGATG	1 cut(s)	615
FspBI	CTAG	2 cut(s)	797, 864
GlaI	GCGC	1 cut(s)	43
HapII	CCGG	5 cut(s)	440, 458, 654, 821, 842
HgaI	GACGC	2 cut(s)	234, 367
HhaI	GCGC	1 cut(s)	44
Hin1I	GRCGYC	2 cut(s)	245, 378
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	4 cut(s)	34, 808, 859, 915
HpaII	CCGG	5 cut(s)	440, 458, 654, 821, 842
HphI	GGTGA	2 cut(s)	224, 454
Hpy166II	GTNNAC	3 cut(s)	445, 709, 739
Hpy188I	TCNGA	6 cut(s)	157, 195, 358, 423, 813, 955
Hpy188III	TCNNGA	6 cut(s)	488, 542, 580, 632, 848, 973
Hpy8I	GTNNAC	3 cut(s)	445, 709, 739
Hpy99I	CGWCG	2 cut(s)	250, 383
HpyAV	CCTTC	2 cut(s)	863, 884
HpyCH4III	ACNGT	1 cut(s)	722
HpyCH4IV	ACGT	3 cut(s)	30, 190, 316
HpyCH4V	TGCA	3 cut(s)	83, 296, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	6 cut(s)	138, 339, 357, 618, 782, 911
HpySE526I	ACGT	3 cut(s)	30, 190, 316
Hsp92I	GRCGYC	2 cut(s)	245, 378
HspAI	GCGC	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	460
LweI	GCATC	2 cut(s)	310, 362
MaeI	CTAG	2 cut(s)	797, 864
MaeII	ACGT	3 cut(s)	30, 190, 316
MaeIII	GTNAC	3 cut(s)	275, 658, 722
MflI	RGATCY	5 cut(s)	195, 576, 670, 907, 967
MluCI	AATT	3 cut(s)	262, 286, 473
MseI	TTAA	5 cut(s)	173, 399, 767, 788, 837
MslI	CAYNNNNRTG	1 cut(s)	601
MspI	CCGG	5 cut(s)	440, 458, 654, 821, 842
MspR9I	CCNGG	4 cut(s)	600, 654, 821, 843
Mva1269I	GAATGC	2 cut(s)	700, 879
MvaI	CCWGG	1 cut(s)	600
MvnI	CGCG	1 cut(s)	534
MwoI	GCNNNNNNNGC	1 cut(s)	236
NciI	CCSGG	3 cut(s)	654, 821, 843
NlaIV	GGNNCC	1 cut(s)	95
PaeR7I	CTCGAG	1 cut(s)	940
PctI	GAATGC	2 cut(s)	700, 879
PfeI	GAWTC	4 cut(s)	34, 808, 859, 915
PmaCI	CACGTG	1 cut(s)	317
PmlI	CACGTG	1 cut(s)	317
Ppu21I	YACGTR	1 cut(s)	317
Psp6I	CCWGG	1 cut(s)	598
PspCI	CACGTG	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	1 cut(s)	95
PspXI	VCTCGAGB	1 cut(s)	940
PsuI	RGATCY	5 cut(s)	195, 576, 670, 907, 967
RsaI	GTAC	2 cut(s)	24, 484
RsaNI	GTAC	2 cut(s)	23, 483
RseI	CAYNNNNRTG	1 cut(s)	601
SaqAI	TTAA	5 cut(s)	173, 399, 767, 788, 837
ScrFI	CCNGG	4 cut(s)	600, 654, 821, 843
SfaNI	GCATC	2 cut(s)	310, 362
Sfr274I	CTCGAG	1 cut(s)	940
SlaI	CTCGAG	1 cut(s)	940
SmiMI	CAYNNNNRTG	1 cut(s)	601
SmlI	CTYRAG	3 cut(s)	488, 940, 971
SmoI	CTYRAG	3 cut(s)	488, 940, 971
Sse9I	AATT	3 cut(s)	262, 286, 473
SsiI	CCGC	7 cut(s)	384, 390, 407, 413, 532, 666, 698
SspMI	CTAG	2 cut(s)	797, 864
StyD4I	CCNGG	4 cut(s)	598, 652, 819, 841
TaaI	ACNGT	1 cut(s)	722
TaiI	ACGT	3 cut(s)	33, 193, 319
TaqI	TCGA	2 cut(s)	73, 941
TasI	AATT	3 cut(s)	262, 286, 473
TatI	WGTACW	2 cut(s)	22, 482
TfiI	GAWTC	4 cut(s)	34, 808, 859, 915
Tru1I	TTAA	5 cut(s)	173, 399, 767, 788, 837
Tru9I	TTAA	5 cut(s)	173, 399, 767, 788, 837
TscAI	CASTG	1 cut(s)	573
TspDTI	ATGAA	2 cut(s)	101, 536
TspGWI	ACGGA	2 cut(s)	62, 234
TspRI	CASTG	1 cut(s)	573
XagI	CCTNNNNNAGG	1 cut(s)	867
XhoI	CTCGAG	1 cut(s)	940
XmiI	GTMKAC	1 cut(s)	738
XspI	CTAG	2 cut(s)	797, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.