Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0010653

Physical Location & Seq

Genomic Coordinates Reverse (-)

1481512 .. 1482894

Gene Structure 1383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005754

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCAGTTGACTACTACGCTGTTCTGAAGTTGACCCGGAACGCGAACCAGGAGGACGTGAAGAAGGCGTACAAGAGGTTGGCCATGAAGTGGCACCCGGATAAGAATCCGGTAGACCACAAGGAGGCGGAGGCCAAGTTCAAGCAAGTATGTGAGGCCTACGATGTGCTCAGTGATCCGCACAAGCGTCAGATCTACGACGTGTACGGCGAGGAGGGACTGAATGATGAGGTTGAGTTTGATGTGGCGCCGCCGCCGAGGAGGTCGGAGCCGGATGATATTTTTAATGAGTTTTTCGAGGAGCAGAATAGGTGGCAGAGGGCGTTTAAGAAGACTTGTAATGGCGGCGGCGGGAGTGGGAGGAGTCAGAAGAGCGGTGGTGGGAAGAAGGTTGCGGCGGTGGAGAGTAAGCTGGTGTGTAGTTTGGAGGATCTTTACAAGGGGGCGAGAAGGAAAATGAGGATTTCGAGAACTGTTCCTGATAATTCTGGTAAGTCAAAGACAATTGAGGAAACCTTAAAGATTGATATCAAGCCAGGATGGAAGAAGGGTACTAAGATCACGTTTCCAGAGAAGGGAAACCAAGAACCTGGCAGCTCTGCAGCAGATCTTATTTTCGTCGTGGACGAGAAACCCCATGATGTGTTCAAGAGGGATGGGAATGATCTTGTGGTCGATCATAAGTTAACTCTACTCGAGGCTCTCACTGGAACATTCATCAATCTGACAACCTTGGATGGAAGGGTTCTCCCTATCCCAGTCAGGAACATAATAAATCCTGGTTATGAGGAGGTGATCCCTAATGAGGGAATGCCAATATCAAAAGATCCCACCAAGAAAGGAAACCTCAGGATCAAGTTTGATGTTGTCTTTCCATCAAAGCTCAGCGCACAACAGAGATCTGATCTGAGAAGAGTGCTAGGTGAAGTTGATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

313

Amino Acids

35.19

Weight (kDa)

8.7

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 67	1.9e-25	DnaJ domain
DnaJ_C	PF01556	135 - 292	6.6e-40	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10350 AT1G59725
fragaria_vesca	FvH4_4g35640
malus_domestica	MD13G1081500.v1.1 MD13G1218800.v1.1 MD16G1080500.v1.1
prunus_persica	Prupe.1G265500_v2.0.a1 Prupe.1G265500_v2.0.a1
pyrus_communis	pycom13g07030 pycom16g06970
rosa_chinensis	RchiOBHm_Chr4g0445261
rosa_laevigata	RLG00000005754
rosa_multiflora	Rmu_sc0000050.1_g000026
rosa_roxburghii	Rroxscaffold_5G00385770
rosa_rugosa	Rorug04G0360000
rosa_samantha	Rh4AG421300 Rh4BG433200 Rh4CG447900 Rh4DG429300
rosa_wichuraiana	Rw4G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	93, 247
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccBSI	CCGCTC	1 cut(s)	375
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	44
AclWI	GGATC	5 cut(s)	170, 438, 790, 821, 860
AcoI	YGGCCR	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	248
AfaI	GTAC	3 cut(s)	71, 206, 553
AfiI	CCNNNNNNNGG	5 cut(s)	90, 124, 575, 805, 806
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	2 cut(s)	142, 649
AjiI	CACGTC	2 cut(s)	58, 202
AjnI	CCWGG	4 cut(s)	48, 535, 589, 778
AloI	GAACNNNNNNTCC	2 cut(s)	122, 154
AluBI	AGCT	3 cut(s)	412, 597, 883
AluI	AGCT	3 cut(s)	412, 597, 883
Alw21I	GWGCWC	1 cut(s)	171
AlwI	GGATC	5 cut(s)	170, 438, 790, 821, 860
Ama87I	CYCGRG	1 cut(s)	695
AoxI	GGCC	3 cut(s)	81, 132, 156
ApeKI	GCWGC	2 cut(s)	594, 602
AspLEI	GCGC	2 cut(s)	250, 890
AsuC2I	CCSGG	2 cut(s)	37, 98
AsuHPI	GGTGA	2 cut(s)	805, 935
AvaI	CYCGRG	1 cut(s)	695
AxyI	CCTNAGG	1 cut(s)	848
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	2 cut(s)	93, 247
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	606, 614
BccI	CCATC	4 cut(s)	534, 650, 731, 883
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	4 cut(s)	50, 537, 591, 780
BcnI	CCSGG	2 cut(s)	37, 98
BfaI	CTAG	1 cut(s)	920
BfmI	CTRYAG	1 cut(s)	600
BfoI	RGCGCY	1 cut(s)	251
BglII	AGATCT	3 cut(s)	192, 607, 899
BisI	GCNGC	7 cut(s)	251, 254, 346, 349, 396, 595, 603
BlpI	GCTNAGC	1 cut(s)	884
BlsI	GCNGC	7 cut(s)	252, 255, 347, 350, 397, 596, 604
Bme1390I	CCNGG	6 cut(s)	37, 50, 98, 537, 591, 780
BmeT110I	CYCGRG	1 cut(s)	695
BmgBI	CACGTC	2 cut(s)	58, 202
BmiI	GGNNCC	3 cut(s)	95, 249, 270
BmrFI	CCNGG	6 cut(s)	37, 50, 98, 537, 591, 780
BmrI	ACTGGG	1 cut(s)	752
BmuI	ACTGGG	1 cut(s)	752
BpiI	GAAGAC	1 cut(s)	338
Bpu1102I	GCTNAGC	1 cut(s)	884
BpuMI	CCSGG	2 cut(s)	37, 98
BsaBI	GATNNNNATC	2 cut(s)	105, 527
BsaHI	GRCGYC	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	257, 732
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	5 cut(s)	90, 124, 575, 805, 806
Bse1I	ACTGG	2 cut(s)	712, 758
Bse21I	CCTNAGG	1 cut(s)	848
Bse8I	GATNNNNATC	2 cut(s)	105, 527
BseBI	CCWGG	4 cut(s)	50, 537, 591, 780
BseDI	CCNNGG	2 cut(s)	257, 732
BseGI	GGATG	4 cut(s)	280, 545, 661, 742
BseJI	GATNNNNATC	2 cut(s)	105, 527
BseLI	CCNNNNNNNGG	5 cut(s)	90, 124, 575, 805, 806
BseMII	CTCAG	4 cut(s)	184, 862, 898, 899
BseNI	ACTGG	2 cut(s)	712, 758
BseRI	GAGGAG	5 cut(s)	227, 274, 314, 376, 803
BseXI	GCAGC	2 cut(s)	606, 614
Bsh1236I	CGCG	1 cut(s)	44
BshFI	GGCC	3 cut(s)	83, 134, 158
BshNI	GGYRCC	2 cut(s)	93, 247
BsiHKAI	GWGCWC	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	695
BsiSI	CCGG	4 cut(s)	37, 98, 110, 272
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	5 cut(s)	90, 124, 575, 805, 806
BsmFI	GGGAC	1 cut(s)	231
BsmI	GAATGC	1 cut(s)	816
BsnI	GGCC	3 cut(s)	83, 134, 158
BsoBI	CYCGRG	1 cut(s)	695
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp1720I	GCTNAGC	1 cut(s)	884
BspANI	GGCC	3 cut(s)	83, 134, 158
BspCNI	CTCAG	4 cut(s)	183, 861, 897, 900
BspFNI	CGCG	1 cut(s)	44
BspLI	GGNNCC	3 cut(s)	95, 249, 270
BspMAI	CTGCAG	1 cut(s)	604
BspPI	GGATC	5 cut(s)	170, 438, 790, 821, 860
BspQI	GCTCTTC	1 cut(s)	365
BspT107I	GGYRCC	2 cut(s)	93, 247
BsrBI	CCGCTC	1 cut(s)	375
BsrI	ACTGG	2 cut(s)	712, 758
BssECI	CCNNGG	2 cut(s)	257, 732
BssNI	GRCGYC	1 cut(s)	248
BssT1I	CCWWGG	1 cut(s)	732
Bst2UI	CCWGG	4 cut(s)	50, 537, 591, 780
Bst4CI	ACNGT	1 cut(s)	475
Bst6I	CTCTTC	2 cut(s)	365, 907
BstACI	GRCGYC	1 cut(s)	248
BstDEI	CTNAG	5 cut(s)	170, 555, 848, 884, 908
BstF5I	GGATG	4 cut(s)	280, 545, 661, 742
BstFNI	CGCG	1 cut(s)	44
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	2 cut(s)	250, 890
BstNI	CCWGG	4 cut(s)	50, 537, 591, 780
BstSCI	CCNGG	6 cut(s)	35, 48, 96, 535, 589, 778
BstSFI	CTRYAG	1 cut(s)	600
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	2 cut(s)	606, 614
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	5 cut(s)	192, 430, 607, 826, 899
BstXI	CCANNNNNNTGG	1 cut(s)	590
BstYI	RGATCY	5 cut(s)	192, 430, 607, 826, 899
Bsu36I	CCTNAGG	1 cut(s)	848
BsuRI	GGCC	3 cut(s)	83, 134, 158
BtrI	CACGTC	2 cut(s)	58, 202
BtsCI	GGATG	4 cut(s)	280, 545, 661, 742
BtsIMutI	CAGTG	2 cut(s)	178, 705
CfoI	GCGC	2 cut(s)	250, 890
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	3 cut(s)	70, 205, 552
CviAII	CATG	2 cut(s)	85, 638
CviJI	RGCY	9 cut(s)	83, 134, 158, 271, 412, 535, 597, 701, 883
CviKI_1	RGCY	9 cut(s)	83, 134, 158, 271, 412, 535, 597, 701, 883
CviQI	GTAC	3 cut(s)	70, 205, 552
DdeI	CTNAG	5 cut(s)	170, 555, 848, 884, 908
DinI	GGCGCC	1 cut(s)	249
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	365, 907
EarI	CTCTTC	2 cut(s)	365, 907
EciI	GGCGGA	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	732
Eco147I	AGGCCT	1 cut(s)	158
Eco32I	GATATC	1 cut(s)	529
Eco57I	CTGAAG	1 cut(s)	47
Eco81I	CCTNAGG	1 cut(s)	848
Eco88I	CYCGRG	1 cut(s)	695
EcoRII	CCWGG	4 cut(s)	48, 535, 589, 778
EcoRV	GATATC	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	732
EgeI	GGCGCC	1 cut(s)	249
EheI	GGCGCC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	732
FaeI	CATG	2 cut(s)	88, 641
FaiI	YATR	6 cut(s)	86, 151, 639, 681, 770, 786
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	2 cut(s)	84, 637
FauI	CCCGC	1 cut(s)	344
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	7 cut(s)	251, 254, 346, 349, 396, 595, 603
FokI	GGATG	4 cut(s)	287, 552, 668, 749
Fsp4HI	GCNGC	7 cut(s)	251, 254, 346, 349, 396, 595, 603
FspBI	CTAG	1 cut(s)	920
GlaI	GCGC	2 cut(s)	249, 889
GluI	GCNGC	7 cut(s)	251, 254, 346, 349, 396, 595, 603
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	3 cut(s)	83, 134, 158
HapII	CCGG	4 cut(s)	37, 98, 110, 272
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	2 cut(s)	250, 890
Hin1I	GRCGYC	1 cut(s)	248
Hin1II	CATG	2 cut(s)	88, 641
Hin6I	GCGC	2 cut(s)	248, 888
HinP1I	GCGC	2 cut(s)	248, 888
HincII	GTYRAC	3 cut(s)	10, 33, 687
HindII	GTYRAC	3 cut(s)	10, 33, 687
HinfI	GANTC	2 cut(s)	106, 364
HpaI	GTTAAC	1 cut(s)	687
HpaII	CCGG	4 cut(s)	37, 98, 110, 272
HphI	GGTGA	2 cut(s)	805, 935
Hpy166II	GTNNAC	6 cut(s)	10, 33, 115, 205, 625, 687
Hpy188I	TCNGA	7 cut(s)	27, 192, 268, 369, 726, 904, 909
Hpy188III	TCNNGA	6 cut(s)	468, 479, 569, 649, 763, 850
Hpy8I	GTNNAC	6 cut(s)	10, 33, 115, 205, 625, 687
Hpy99I	CGWCG	2 cut(s)	203, 623
HpyAV	CCTTC	6 cut(s)	58, 382, 444, 541, 568, 735
HpyCH4III	ACNGT	1 cut(s)	475
HpyCH4IV	ACGT	3 cut(s)	57, 201, 563
HpyCH4V	TGCA	1 cut(s)	602
HpyF3I	CTNAG	5 cut(s)	170, 555, 848, 884, 908
HpySE526I	ACGT	3 cut(s)	57, 201, 563
Hsp92I	GRCGYC	1 cut(s)	248
Hsp92II	CATG	2 cut(s)	88, 641
HspAI	GCGC	2 cut(s)	248, 888
KasI	GGCGCC	1 cut(s)	247
KspAI	GTTAAC	1 cut(s)	687
LguI	GCTCTTC	1 cut(s)	365
LmnI	GCTCC	2 cut(s)	268, 301
Lsp1109I	GCAGC	2 cut(s)	606, 614
MaeI	CTAG	1 cut(s)	920
MaeII	ACGT	3 cut(s)	57, 201, 563
MbiI	CCGCTC	1 cut(s)	375
MboII	GAAGA	6 cut(s)	73, 343, 382, 397, 556, 924
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	5 cut(s)	192, 430, 607, 826, 899
MhlI	GDGCHC	1 cut(s)	171
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	2 cut(s)	484, 504
MluNI	TGGCCA	1 cut(s)	83
Mly113I	GGCGCC	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	1 cut(s)	246
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	4 cut(s)	285, 327, 518, 686
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	4 cut(s)	37, 98, 110, 272
MspR9I	CCNGG	6 cut(s)	37, 50, 98, 537, 591, 780
MunI	CAATTG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	816
MvaI	CCWGG	4 cut(s)	50, 537, 591, 780
MvnI	CGCG	1 cut(s)	44
NarI	GGCGCC	1 cut(s)	248
NciI	CCSGG	2 cut(s)	37, 98
NlaIII	CATG	2 cut(s)	88, 641
NlaIV	GGNNCC	3 cut(s)	95, 249, 270
NmeAIII	GCCGAG	1 cut(s)	282
PaeR7I	CTCGAG	1 cut(s)	695
PceI	AGGCCT	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	365
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 624
PctI	GAATGC	1 cut(s)	816
PfeI	GAWTC	1 cut(s)	106
PflMI	CCANNNNNTGG	1 cut(s)	90
PkrI	GCNGC	7 cut(s)	252, 255, 347, 350, 397, 596, 604
PleI	GAGTC	1 cut(s)	372
PluTI	GGCGCC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	372
Psp6I	CCWGG	4 cut(s)	48, 535, 589, 778
PspGI	CCWGG	4 cut(s)	48, 535, 589, 778
PspN4I	GGNNCC	3 cut(s)	95, 249, 270
PspXI	VCTCGAGB	1 cut(s)	695
PstI	CTGCAG	1 cut(s)	604
PsuI	RGATCY	5 cut(s)	192, 430, 607, 826, 899
RsaI	GTAC	3 cut(s)	71, 206, 553
RsaNI	GTAC	3 cut(s)	70, 205, 552
SapI	GCTCTTC	1 cut(s)	365
SaqAI	TTAA	4 cut(s)	285, 327, 518, 686
SatI	GCNGC	7 cut(s)	251, 254, 346, 349, 396, 595, 603
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	6 cut(s)	37, 50, 98, 537, 591, 780
SduI	GDGCHC	1 cut(s)	171
SfcI	CTRYAG	1 cut(s)	600
SfoI	GGCGCC	1 cut(s)	249
Sfr274I	CTCGAG	1 cut(s)	695
SlaI	CTCGAG	1 cut(s)	695
SmlI	CTYRAG	1 cut(s)	695
SmoI	CTYRAG	1 cut(s)	695
Sse9I	AATT	2 cut(s)	484, 504
SseBI	AGGCCT	1 cut(s)	158
SspDI	GGCGCC	1 cut(s)	247
SspMI	CTAG	1 cut(s)	920
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	6 cut(s)	35, 48, 96, 535, 589, 778
StyI	CCWWGG	1 cut(s)	732
TaaI	ACNGT	1 cut(s)	475
TaiI	ACGT	3 cut(s)	60, 204, 566
TaqI	TCGA	4 cut(s)	297, 467, 675, 696
TasI	AATT	2 cut(s)	484, 504
TauI	GCSGC	5 cut(s)	253, 256, 348, 351, 398
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	4 cut(s)	285, 327, 518, 686
Tru9I	TTAA	4 cut(s)	285, 327, 518, 686
TscAI	CASTG	2 cut(s)	178, 712
TseI	GCWGC	2 cut(s)	594, 602
TspDTI	ATGAA	2 cut(s)	101, 706
TspRI	CASTG	2 cut(s)	178, 712
Van91I	CCANNNNNTGG	1 cut(s)	90
XhoI	CTCGAG	1 cut(s)	695
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.