Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0010653

Physical Location & Seq

Genomic Coordinates Reverse (-)

21120660 .. 21121070

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1218800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAGATGGAACCCCGATAAGAACTTGATCGACAATGAGGAAGTGGAGGCCAAGTTCAAGCAGGTGTACCAGGGGTACGATGTTCTCAGCGACCCGCAGCGGCGCCAGATCTACGACATCTATGGCGAGGAGGGGCTCAATTGCGGCGACCCGGATGACATTTTCATCGAGTTTTTCGATGGATCTGGCGGCGTTGGGAACAAGGTGTTCAAGAAGAGCAGTGTGAATGGCGAAGGGCATAATGGTAATTTGAAAAGTAAGAAGGTTGCGGCTATTGAGAGCAATTTGGTGTGCAGTTTGGAGGATCTTTACAGAGAGAAGTGCGAAGGAAAAGCAAAAAGAGCAAAGCATGGCTGCCCATTAAGTGCAGCAGAGAAAAGGAAAAAGAGAGATGATGGTTATTGCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

137

Amino Acids

15.32

Weight (kDa)

6.15

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	1 - 39	5.7e-09	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10350 AT1G59725
fragaria_vesca	FvH4_4g35640
malus_domestica	MD13G1081500.v1.1 MD13G1218800.v1.1 MD16G1080500.v1.1
prunus_persica	Prupe.1G265500_v2.0.a1 Prupe.1G265500_v2.0.a1
pyrus_communis	pycom13g07030 pycom16g06970
rosa_chinensis	RchiOBHm_Chr4g0445261
rosa_laevigata	RLG00000005754
rosa_multiflora	Rmu_sc0000050.1_g000026
rosa_roxburghii	Rroxscaffold_5G00385770
rosa_rugosa	Rorug04G0360000
rosa_samantha	Rh4AG421300 Rh4BG433200 Rh4CG447900 Rh4DG429300
rosa_wichuraiana	Rw4G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	52
Acc36I	ACCTGC	1 cut(s)	52
AccB1I	GGYRCC	1 cut(s)	102
AciI	CCGC	5 cut(s)	95, 100, 144, 189, 269
AclWI	GGATC	2 cut(s)	190, 312
AcyI	GRCGYC	1 cut(s)	103
AfaI	GTAC	2 cut(s)	68, 77
AgsI	TTSAA	3 cut(s)	58, 211, 253
AjnI	CCWGG	1 cut(s)	69
AloI	GAACNNNNNNTCC	2 cut(s)	38, 70
AlwI	GGATC	2 cut(s)	190, 312
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	3 cut(s)	97, 354, 368
AspLEI	GCGC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	138
BbvI	GCAGC	3 cut(s)	109, 341, 380
BccI	CCATC	2 cut(s)	173, 389
BciT130I	CCWGG	1 cut(s)	71
BcnI	CCSGG	1 cut(s)	152
BfoI	RGCGCY	1 cut(s)	106
BfuAI	ACCTGC	1 cut(s)	52
BglII	AGATCT	1 cut(s)	108
BisI	GCNGC	7 cut(s)	98, 101, 145, 190, 270, 355, 369
BlsI	GCNGC	7 cut(s)	99, 102, 146, 191, 271, 356, 370
Bme1390I	CCNGG	2 cut(s)	71, 152
BmiI	GGNNCC	2 cut(s)	11, 104
BmrFI	CCNGG	2 cut(s)	71, 152
BpuMI	CCSGG	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	70
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	3 cut(s)	109, 341, 380
BsgI	GTGCAG	2 cut(s)	313, 387
BshFI	GGCC	1 cut(s)	50
BshNI	GGYRCC	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	152
BsnI	GGCC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	4 cut(s)	27, 108, 182, 304
BspACI	CCGC	5 cut(s)	95, 100, 144, 189, 269
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	11, 104
BspMI	ACCTGC	1 cut(s)	52
BspPI	GGATC	2 cut(s)	190, 312
BspQI	GCTCTTC	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	4 cut(s)	27, 108, 182, 304
BssNI	GRCGYC	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	209
BstACI	GRCGYC	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	160
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	4 cut(s)	30, 111, 185, 307
BstMBI	GATC	4 cut(s)	27, 108, 182, 304
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	2 cut(s)	69, 150
BstV1I	GCAGC	3 cut(s)	109, 341, 380
BstX2I	RGATCY	3 cut(s)	108, 182, 304
BstYI	RGATCY	3 cut(s)	108, 182, 304
BsuRI	GGCC	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	160
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	226
BveI	ACCTGC	1 cut(s)	52
CfoI	GCGC	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	67, 76
CviAII	CATG	1 cut(s)	350
CviJI	RGCY	4 cut(s)	50, 136, 272, 354
CviKI_1	RGCY	4 cut(s)	50, 136, 272, 354
CviQI	GTAC	2 cut(s)	67, 76
DdeI	CTNAG	1 cut(s)	86
DinI	GGCGCC	1 cut(s)	104
DpnI	GATC	4 cut(s)	29, 110, 184, 306
DpnII	GATC	4 cut(s)	27, 108, 182, 304
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	138
EgeI	GGCGCC	1 cut(s)	104
EheI	GGCGCC	1 cut(s)	104
FaeI	CATG	1 cut(s)	353
FaiI	YATR	3 cut(s)	123, 240, 351
FatI	CATG	1 cut(s)	349
FauI	CCCGC	1 cut(s)	102
Fnu4HI	GCNGC	7 cut(s)	98, 101, 145, 190, 270, 355, 369
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	7 cut(s)	98, 101, 145, 190, 270, 355, 369
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	7 cut(s)	98, 101, 145, 190, 270, 355, 369
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	152
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	353
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HpaII	CCGG	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	1 cut(s)	67
HpyAV	CCTTC	3 cut(s)	227, 256, 320
HpyCH4V	TGCA	2 cut(s)	294, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	1 cut(s)	86
Hsp92I	GRCGYC	1 cut(s)	103
Hsp92II	CATG	1 cut(s)	353
HspAI	GCGC	1 cut(s)	103
KasI	GGCGCC	1 cut(s)	102
Kzo9I	GATC	4 cut(s)	27, 108, 182, 304
LguI	GCTCTTC	1 cut(s)	209
LpnPI	CCDG	6 cut(s)	47, 56, 83, 119, 165, 171
Lsp1109I	GCAGC	3 cut(s)	109, 341, 380
MalI	GATC	4 cut(s)	29, 110, 184, 306
MboI	GATC	4 cut(s)	27, 108, 182, 304
MboII	GAAGA	1 cut(s)	226
MfeI	CAATTG	1 cut(s)	139
MflI	RGATCY	3 cut(s)	108, 182, 304
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	3 cut(s)	139, 247, 283
Mly113I	GGCGCC	1 cut(s)	103
MnlI	CCTC	5 cut(s)	31, 40, 121, 124, 295
MseI	TTAA	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	100
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	2 cut(s)	71, 152
MunI	CAATTG	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	341
NarI	GGCGCC	1 cut(s)	103
NciI	CCSGG	1 cut(s)	152
NdeII	GATC	4 cut(s)	27, 108, 182, 304
NlaIII	CATG	1 cut(s)	353
NlaIV	GGNNCC	2 cut(s)	11, 104
PaqCI	CACCTGC	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PkrI	GCNGC	7 cut(s)	99, 102, 146, 191, 271, 356, 370
PluTI	GGCGCC	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	11, 104
PsuI	RGATCY	3 cut(s)	108, 182, 304
RsaI	GTAC	2 cut(s)	68, 77
RsaNI	GTAC	2 cut(s)	67, 76
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	362
SatI	GCNGC	7 cut(s)	98, 101, 145, 190, 270, 355, 369
Sau3AI	GATC	4 cut(s)	27, 108, 182, 304
ScrFI	CCNGG	2 cut(s)	71, 152
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	3 cut(s)	66, 207, 267
SfoI	GGCGCC	1 cut(s)	104
Sse9I	AATT	3 cut(s)	139, 247, 283
SsiI	CCGC	5 cut(s)	95, 100, 144, 189, 269
SspDI	GGCGCC	1 cut(s)	102
StyD4I	CCNGG	2 cut(s)	69, 150
TaqI	TCGA	3 cut(s)	30, 168, 177
TasI	AATT	3 cut(s)	139, 247, 283
TauI	GCSGC	4 cut(s)	103, 147, 192, 272
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	3 cut(s)	97, 354, 368
TspDTI	ATGAA	1 cut(s)	154
TspRI	CASTG	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.