Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000050.1

Orthogroup ID

OG0010653

Physical Location & Seq

Genomic Coordinates Reverse (-)

101121 .. 102514

Gene Structure 1394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000050.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atggcagttgactactacgctgttctgaagttgacccggaacgcgaaccaggaggacgtgaagaaggcgtacaagaggttggccatgaagtggcacccggataagaacccggtcgaccacaaggaggcggaggccaagttcaagcaagtatgtgaggcctacgatgtgcttagtgatccgcagaagcgtcagatctacgacgtgtacggcgaggagggactgaatgatgacgttgagtttgatgtggcggcgccgaggaggtcggagccggatgatatttttaatgagtttttcgaggaccagaatagctggcagagggcgtttaagaagacttgtaatggcggcggcgggagtgggaggagtcagaagagcggtggtgggattgggaagaaggttgcggcggtggagagtaagctggcgtgtagtttggaggatctttacaagggggcgagaaggaaaatgaggatttcgagaactgttcctgataattttggtaagtcaaagacagttgaggaaaccttaaagattgatatcaagccaggatggaagaagggtacgaagatcacgtttccagagaagggaaaccaagaacctggcagctctgcagcagatcttattttcgtcgtggacgagaaaccccatgatgtgttcaagagggatgggaatgatcttgtggtcgatcataagttaactctactcgaggctctcactggaacattcatcaatctgacaaccttggatggaagggttctccctatcccagtcaggaacataataaatcctggttatgaggaggtgatccctaatgagggaatgccaatatcaaaagatcccaccaagaaaggaaacctcaggatcaagtttgatgttgtctttccatcaaagctcagcgcacagcagagatctgatctgagaagagtgctaggtgaagttgataactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

313

Amino Acids

35.15

Weight (kDa)

8.51

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10350 AT1G59725
fragaria_vesca	FvH4_4g35640
malus_domestica	MD13G1081500.v1.1 MD13G1218800.v1.1 MD16G1080500.v1.1
prunus_persica	Prupe.1G265500_v2.0.a1 Prupe.1G265500_v2.0.a1
pyrus_communis	pycom13g07030 pycom16g06970
rosa_chinensis	RchiOBHm_Chr4g0445261
rosa_laevigata	RLG00000005754
rosa_multiflora	Rmu_sc0000050.1_g000026
rosa_roxburghii	Rroxscaffold_5G00385770
rosa_rugosa	Rorug04G0360000
rosa_samantha	Rh4AG421300 Rh4BG433200 Rh4CG447900 Rh4DG429300
rosa_wichuraiana	Rw4G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	93, 250
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccBSI	CCGCTC	1 cut(s)	372
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	44
AciI	CCGC	9 cut(s)	128, 179, 248, 342, 345, 348, 372, 398, 401
AclWI	GGATC	5 cut(s)	170, 441, 793, 824, 863
AcoI	YGGCCR	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	251
AfaI	GTAC	3 cut(s)	71, 206, 556
AfiI	CCNNNNNNNGG	5 cut(s)	90, 124, 578, 808, 809
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	2 cut(s)	142, 652
AjiI	CACGTC	2 cut(s)	58, 202
AjnI	CCWGG	4 cut(s)	48, 538, 592, 781
AloI	GAACNNNNNNTCC	2 cut(s)	122, 154
AluBI	AGCT	4 cut(s)	309, 415, 600, 886
AluI	AGCT	4 cut(s)	309, 415, 600, 886
AlwI	GGATC	5 cut(s)	170, 441, 793, 824, 863
Ama87I	CYCGRG	1 cut(s)	698
AoxI	GGCC	3 cut(s)	81, 132, 156
ApeKI	GCWGC	2 cut(s)	597, 605
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspLEI	GCGC	2 cut(s)	253, 893
AspS9I	GGNCC	1 cut(s)	298
AsuC2I	CCSGG	3 cut(s)	37, 98, 110
AsuHPI	GGTGA	2 cut(s)	808, 938
AvaI	CYCGRG	1 cut(s)	698
AvaII	GGWCC	1 cut(s)	298
AxyI	CCTNAGG	1 cut(s)	851
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	2 cut(s)	93, 250
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbsI	GAAGAC	1 cut(s)	335
BbvI	GCAGC	2 cut(s)	609, 617
BccI	CCATC	4 cut(s)	537, 653, 734, 886
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	4 cut(s)	50, 540, 594, 783
BcnI	CCSGG	3 cut(s)	37, 98, 110
BfaI	CTAG	1 cut(s)	923
BfmI	CTRYAG	1 cut(s)	603
BfoI	RGCGCY	1 cut(s)	254
BglII	AGATCT	3 cut(s)	192, 610, 902
BisI	GCNGC	6 cut(s)	249, 343, 346, 399, 598, 606
BlpI	GCTNAGC	1 cut(s)	887
BlsI	GCNGC	6 cut(s)	250, 344, 347, 400, 599, 607
Bme1390I	CCNGG	7 cut(s)	37, 50, 98, 110, 540, 594, 783
Bme18I	GGWCC	1 cut(s)	298
BmeT110I	CYCGRG	1 cut(s)	698
BmgBI	CACGTC	2 cut(s)	58, 202
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	3 cut(s)	95, 252, 267
BmrFI	CCNGG	7 cut(s)	37, 50, 98, 110, 540, 594, 783
BmrI	ACTGGG	1 cut(s)	755
BmuI	ACTGGG	1 cut(s)	755
BpiI	GAAGAC	1 cut(s)	335
Bpu1102I	GCTNAGC	1 cut(s)	887
BpuMI	CCSGG	3 cut(s)	37, 98, 110
BsaBI	GATNNNNATC	1 cut(s)	530
BsaHI	GRCGYC	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	254, 735
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	5 cut(s)	90, 124, 578, 808, 809
Bse1I	ACTGG	2 cut(s)	715, 761
Bse21I	CCTNAGG	1 cut(s)	851
Bse8I	GATNNNNATC	1 cut(s)	530
BseBI	CCWGG	4 cut(s)	50, 540, 594, 783
BseDI	CCNNGG	2 cut(s)	254, 735
BseGI	GGATG	4 cut(s)	277, 548, 664, 745
BseJI	GATNNNNATC	1 cut(s)	530
BseLI	CCNNNNNNNGG	5 cut(s)	90, 124, 578, 808, 809
BseMII	CTCAG	3 cut(s)	865, 901, 902
BseNI	ACTGG	2 cut(s)	715, 761
BseRI	GAGGAG	4 cut(s)	227, 271, 373, 806
BseXI	GCAGC	2 cut(s)	609, 617
Bsh1236I	CGCG	1 cut(s)	44
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	3 cut(s)	83, 134, 158
BshNI	GGYRCC	2 cut(s)	93, 250
BsiEI	CGRYCG	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	698
BsiSI	CCGG	4 cut(s)	37, 98, 110, 269
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	5 cut(s)	90, 124, 578, 808, 809
BsmFI	GGGAC	1 cut(s)	231
BsmI	GAATGC	1 cut(s)	819
BsnI	GGCC	3 cut(s)	83, 134, 158
BsoBI	CYCGRG	1 cut(s)	698
Bsp1720I	GCTNAGC	1 cut(s)	887
BspACI	CCGC	9 cut(s)	128, 179, 248, 342, 345, 348, 372, 398, 401
BspANI	GGCC	3 cut(s)	83, 134, 158
BspCNI	CTCAG	3 cut(s)	864, 900, 903
BspFNI	CGCG	1 cut(s)	44
BspLI	GGNNCC	3 cut(s)	95, 252, 267
BspMAI	CTGCAG	1 cut(s)	607
BspPI	GGATC	5 cut(s)	170, 441, 793, 824, 863
BspQI	GCTCTTC	1 cut(s)	362
BspT107I	GGYRCC	2 cut(s)	93, 250
BsrBI	CCGCTC	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	715, 761
BssECI	CCNNGG	2 cut(s)	254, 735
BssNI	GRCGYC	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	735
Bst2UI	CCWGG	4 cut(s)	50, 540, 594, 783
Bst4CI	ACNGT	2 cut(s)	478, 508
Bst6I	CTCTTC	2 cut(s)	362, 910
BstACI	GRCGYC	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	311, 417
BstDEI	CTNAG	4 cut(s)	170, 851, 887, 911
BstF5I	GGATG	4 cut(s)	277, 548, 664, 745
BstFNI	CGCG	1 cut(s)	44
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	2 cut(s)	253, 893
BstMCI	CGRYCG	1 cut(s)	114
BstNI	CCWGG	4 cut(s)	50, 540, 594, 783
BstSCI	CCNGG	7 cut(s)	35, 48, 96, 108, 538, 592, 781
BstSFI	CTRYAG	1 cut(s)	603
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	2 cut(s)	609, 617
BstV2I	GAAGAC	1 cut(s)	335
BstX2I	RGATCY	5 cut(s)	192, 433, 610, 829, 902
BstXI	CCANNNNNNTGG	1 cut(s)	593
BstYI	RGATCY	5 cut(s)	192, 433, 610, 829, 902
Bsu36I	CCTNAGG	1 cut(s)	851
BsuRI	GGCC	3 cut(s)	83, 134, 158
BtrI	CACGTC	2 cut(s)	58, 202
BtsCI	GGATG	4 cut(s)	277, 548, 664, 745
BtsIMutI	CAGTG	1 cut(s)	708
Cac8I	GCNNGC	2 cut(s)	311, 417
CfoI	GCGC	2 cut(s)	253, 893
Cfr13I	GGNCC	1 cut(s)	298
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	3 cut(s)	70, 205, 555
CviAII	CATG	2 cut(s)	85, 641
CviQI	GTAC	3 cut(s)	70, 205, 555
DdeI	CTNAG	4 cut(s)	170, 851, 887, 911
DinI	GGCGCC	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	362, 910
EarI	CTCTTC	2 cut(s)	362, 910
EciI	GGCGGA	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	735
Eco147I	AGGCCT	1 cut(s)	158
Eco32I	GATATC	1 cut(s)	532
Eco47I	GGWCC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	47
Eco81I	CCTNAGG	1 cut(s)	851
Eco88I	CYCGRG	1 cut(s)	698
EcoRII	CCWGG	4 cut(s)	48, 538, 592, 781
EcoRV	GATATC	1 cut(s)	532
EcoT14I	CCWWGG	1 cut(s)	735
EgeI	GGCGCC	1 cut(s)	252
EheI	GGCGCC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	735
FaeI	CATG	2 cut(s)	88, 644
FaiI	YATR	6 cut(s)	86, 151, 642, 684, 773, 789
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	2 cut(s)	84, 640
FauI	CCCGC	1 cut(s)	341
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	6 cut(s)	249, 343, 346, 399, 598, 606
FokI	GGATG	4 cut(s)	284, 555, 671, 752
Fsp4HI	GCNGC	6 cut(s)	249, 343, 346, 399, 598, 606
FspBI	CTAG	1 cut(s)	923
GlaI	GCGC	2 cut(s)	252, 892
GluI	GCNGC	6 cut(s)	249, 343, 346, 399, 598, 606
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	3 cut(s)	83, 134, 158
HapII	CCGG	4 cut(s)	37, 98, 110, 269
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	2 cut(s)	253, 893
Hin1I	GRCGYC	1 cut(s)	251
Hin1II	CATG	2 cut(s)	88, 644
Hin6I	GCGC	2 cut(s)	251, 891
HinP1I	GCGC	2 cut(s)	251, 891
HincII	GTYRAC	4 cut(s)	10, 33, 115, 690
HindII	GTYRAC	4 cut(s)	10, 33, 115, 690
HinfI	GANTC	1 cut(s)	361
HpaI	GTTAAC	1 cut(s)	690
HpaII	CCGG	4 cut(s)	37, 98, 110, 269
HphI	GGTGA	2 cut(s)	808, 938
Hpy166II	GTNNAC	6 cut(s)	10, 33, 115, 205, 628, 690
Hpy188I	TCNGA	7 cut(s)	27, 192, 265, 366, 729, 907, 912
Hpy188III	TCNNGA	6 cut(s)	471, 482, 572, 652, 766, 853
Hpy8I	GTNNAC	6 cut(s)	10, 33, 115, 205, 628, 690
Hpy99I	CGWCG	2 cut(s)	203, 626
HpyAV	CCTTC	6 cut(s)	58, 385, 447, 544, 571, 738
HpyCH4III	ACNGT	2 cut(s)	478, 508
HpyCH4IV	ACGT	4 cut(s)	57, 201, 231, 566
HpyCH4V	TGCA	1 cut(s)	605
HpyF3I	CTNAG	4 cut(s)	170, 851, 887, 911
HpySE526I	ACGT	4 cut(s)	57, 201, 231, 566
Hsp92I	GRCGYC	1 cut(s)	251
Hsp92II	CATG	2 cut(s)	88, 644
HspAI	GCGC	2 cut(s)	251, 891
KasI	GGCGCC	1 cut(s)	250
KspAI	GTTAAC	1 cut(s)	690
LguI	GCTCTTC	1 cut(s)	362
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	2 cut(s)	609, 617
MaeI	CTAG	1 cut(s)	923
MaeII	ACGT	4 cut(s)	57, 201, 231, 566
MbiI	CCGCTC	1 cut(s)	372
MboII	GAAGA	7 cut(s)	73, 340, 379, 400, 559, 571, 927
MflI	RGATCY	5 cut(s)	192, 433, 610, 829, 902
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	1 cut(s)	487
MluNI	TGGCCA	1 cut(s)	83
Mly113I	GGCGCC	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	370
MmeI	TCCRAC	1 cut(s)	243
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	4 cut(s)	282, 324, 521, 689
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	4 cut(s)	37, 98, 110, 269
MspR9I	CCNGG	7 cut(s)	37, 50, 98, 110, 540, 594, 783
Mva1269I	GAATGC	1 cut(s)	819
MvaI	CCWGG	4 cut(s)	50, 540, 594, 783
MvnI	CGCG	1 cut(s)	44
NarI	GGCGCC	1 cut(s)	251
NciI	CCSGG	3 cut(s)	37, 98, 110
NlaIII	CATG	2 cut(s)	88, 644
NlaIV	GGNNCC	3 cut(s)	95, 252, 267
NmeAIII	GCCGAG	1 cut(s)	279
PaeR7I	CTCGAG	1 cut(s)	698
PceI	AGGCCT	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	362
PcsI	WCGNNNNNNNCGW	3 cut(s)	207, 563, 627
PctI	GAATGC	1 cut(s)	819
PflMI	CCANNNNNTGG	1 cut(s)	90
PkrI	GCNGC	6 cut(s)	250, 344, 347, 400, 599, 607
PleI	GAGTC	1 cut(s)	369
PluTI	GGCGCC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	369
Psp6I	CCWGG	4 cut(s)	48, 538, 592, 781
PspGI	CCWGG	4 cut(s)	48, 538, 592, 781
PspN4I	GGNNCC	3 cut(s)	95, 252, 267
PspPI	GGNCC	1 cut(s)	298
PspXI	VCTCGAGB	1 cut(s)	698
PstI	CTGCAG	1 cut(s)	607
PsuI	RGATCY	5 cut(s)	192, 433, 610, 829, 902
RsaI	GTAC	3 cut(s)	71, 206, 556
RsaNI	GTAC	3 cut(s)	70, 205, 555
SalI	GTCGAC	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	362
SaqAI	TTAA	4 cut(s)	282, 324, 521, 689
SatI	GCNGC	6 cut(s)	249, 343, 346, 399, 598, 606
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	7 cut(s)	37, 50, 98, 110, 540, 594, 783
SfcI	CTRYAG	1 cut(s)	603
SfoI	GGCGCC	1 cut(s)	252
Sfr274I	CTCGAG	1 cut(s)	698
SinI	GGWCC	1 cut(s)	298
SlaI	CTCGAG	1 cut(s)	698
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
Sse9I	AATT	1 cut(s)	487
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	9 cut(s)	128, 179, 248, 342, 345, 348, 372, 398, 401
SspDI	GGCGCC	1 cut(s)	250
SspMI	CTAG	1 cut(s)	923
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	7 cut(s)	35, 48, 96, 108, 538, 592, 781
StyI	CCWWGG	1 cut(s)	735
TaaI	ACNGT	2 cut(s)	478, 508
TaiI	ACGT	4 cut(s)	60, 204, 234, 569
TaqI	TCGA	5 cut(s)	114, 294, 470, 678, 699
TasI	AATT	1 cut(s)	487
TauI	GCSGC	4 cut(s)	251, 345, 348, 401
Tru1I	TTAA	4 cut(s)	282, 324, 521, 689
Tru9I	TTAA	4 cut(s)	282, 324, 521, 689
TscAI	CASTG	1 cut(s)	715
TseI	GCWGC	2 cut(s)	597, 605
TspDTI	ATGAA	2 cut(s)	101, 709
TspRI	CASTG	1 cut(s)	715
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	298
XhoI	CTCGAG	1 cut(s)	698
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.