Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010653

Physical Location & Seq

Genomic Coordinates Forward (+)

32900485 .. 32902586

Gene Structure 2102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCGGTTGACTACTATGCCGTTCTGAAGCTGACACGGACAGCGAACCAGGAGGACGTGAAGAAGGCCTACAAGAGGCTGGCGATGAAATGGCACCCGGACAAGAACCCGGCGGACAACAAGGAGGCCGAGGCCAAGTTCAAGCAAGTGTGTCAGGCCTACGATGTGCTTAGTGATCCGCAGAAGCGTCAGATCTACGACGTGTACGGCGAGGAAGGGCTAAACGAGGTTGAGTTTGATGCGGCGGAGACACGGCCGCCGCCGCGGCGGGCGGACCCGGATGATATATTGCTTGGGGAGTTTTTTGAGGAGCAGAATAGCTGGCAGAGGGCGTTTAAGAAGACTTGTAATGGCGGCGGAGGCGGCGGAGGGAGTGGTCGGAGTCAGAAGAGTGGTGGCGGGAAGAAGGTTGCGGCGGTGGAGAGTAAGCTGGTGTGTAGTTTGGAGGATCTTTACAAGGGGGCTAGGAGGAAAATGAAGATTTCGAGAACTGTTCCGGATGATTTTGGCAAGTCAAAGACCATTGAGGAAACCTTAAAGATTGATATCAAGCCGGGTTGGAAGAAGGGTACTAAGATCACGTTTCCGCAGAAGGGAAACCAAGAACCTGGCAGCTCTGCAGCTGATCTTATTTTCGTTGTGGATGAGAAACCCCATGATGTGTTCACAAGGGATGGGAATGATCTCTCGGTTGATCATAAGTTAACACTACTCGAGGCTCTCACTGGAACAATCGTCAATCTGACAACTTTAGATGGAAGGGTACTCCCTATCCCAGTCAGGAACATAATAAATCCTGGCTATGAGGAGGTGATCCCTAACGAGGGAATGCCAATATCAAAAGATCCCACCAAGAAAGGAAACCTCAGGATCAAGTTTGATGTGGTCTTTCCATCAAAGCTCAGCGCACAACAGAGGTCTGATCTGAGAAGGGTGCTAGGTGAAGTTGATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

319

Amino Acids

35.39

Weight (kDa)

8.7

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 67	4.8e-26	DnaJ domain
DnaJ_C	PF01556	141 - 298	6.4e-39	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10350 AT1G59725
fragaria_vesca	FvH4_4g35640
malus_domestica	MD13G1081500.v1.1 MD13G1218800.v1.1 MD16G1080500.v1.1
prunus_persica	Prupe.1G265500_v2.0.a1 Prupe.1G265500_v2.0.a1
pyrus_communis	pycom13g07030 pycom16g06970
rosa_chinensis	RchiOBHm_Chr4g0445261
rosa_laevigata	RLG00000005754
rosa_multiflora	Rmu_sc0000050.1_g000026
rosa_roxburghii	Rroxscaffold_5G00385770
rosa_rugosa	Rorug04G0360000
rosa_samantha	Rh4AG421300 Rh4BG433200 Rh4CG447900 Rh4DG429300
rosa_wichuraiana	Rw4G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	93
AccII	CGCG	1 cut(s)	265
AccIII	TCCGGA	1 cut(s)	496
AclWI	GGATC	5 cut(s)	170, 456, 808, 839, 878
AcoI	YGGCCR	1 cut(s)	254
AcuI	CTGAAG	1 cut(s)	47
AfaI	GTAC	3 cut(s)	206, 571, 765
AfiI	CCNNNNNNNGG	4 cut(s)	75, 593, 823, 824
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	1 cut(s)	142
AjiI	CACGTC	2 cut(s)	58, 202
AjnI	CCWGG	3 cut(s)	48, 607, 796
AluBI	AGCT	6 cut(s)	31, 321, 430, 615, 623, 901
AluI	AGCT	6 cut(s)	31, 321, 430, 615, 623, 901
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	5 cut(s)	170, 456, 808, 839, 878
Ama87I	CYCGRG	1 cut(s)	713
Aor13HI	TCCGGA	1 cut(s)	496
AoxI	GGCC	5 cut(s)	66, 126, 132, 156, 254
ApeKI	GCWGC	2 cut(s)	612, 620
AspLEI	GCGC	1 cut(s)	908
AspS9I	GGNCC	1 cut(s)	274
AsuC2I	CCSGG	4 cut(s)	98, 110, 278, 555
AsuHPI	GGTGA	2 cut(s)	823, 953
AvaI	CYCGRG	1 cut(s)	713
AvaII	GGWCC	1 cut(s)	274
AxyI	CCTNAGG	1 cut(s)	866
BanI	GGYRCC	1 cut(s)	93
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbsI	GAAGAC	1 cut(s)	347
BbvI	GCAGC	2 cut(s)	624, 632
BccI	CCATC	3 cut(s)	668, 749, 901
BceAI	ACGGC	3 cut(s)	5, 223, 269
BciT130I	CCWGG	3 cut(s)	50, 609, 798
BclI	TGATCA	1 cut(s)	694
BcnI	CCSGG	4 cut(s)	98, 110, 278, 555
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	2 cut(s)	465, 938
BfmI	CTRYAG	1 cut(s)	618
BglI	GCCNNNNNGGC	1 cut(s)	265
BglII	AGATCT	1 cut(s)	192
BlpI	GCTNAGC	1 cut(s)	902
Bme1390I	CCNGG	7 cut(s)	50, 98, 110, 278, 555, 609, 798
Bme18I	GGWCC	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	713
BmgBI	CACGTC	2 cut(s)	58, 202
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	2 cut(s)	95, 276
BmrFI	CCNGG	7 cut(s)	50, 98, 110, 278, 555, 609, 798
BmrI	ACTGGG	1 cut(s)	770
BmsI	GCATC	1 cut(s)	229
BmuI	ACTGGG	1 cut(s)	770
BpiI	GAAGAC	1 cut(s)	347
Bpu1102I	GCTNAGC	1 cut(s)	902
BpuMI	CCSGG	4 cut(s)	98, 110, 278, 555
BsaBI	GATNNNNATC	1 cut(s)	545
BsaJI	CCNNGG	2 cut(s)	129, 263
BsaWI	WCCGGW	1 cut(s)	496
Bsc4I	CCNNNNNNNGG	4 cut(s)	75, 593, 823, 824
Bse1I	ACTGG	2 cut(s)	730, 776
Bse21I	CCTNAGG	1 cut(s)	866
Bse8I	GATNNNNATC	1 cut(s)	545
BseAI	TCCGGA	1 cut(s)	496
BseBI	CCWGG	3 cut(s)	50, 609, 798
BseDI	CCNNGG	2 cut(s)	129, 263
BseGI	GGATG	4 cut(s)	286, 505, 649, 679
BseJI	GATNNNNATC	1 cut(s)	545
BseLI	CCNNNNNNNGG	4 cut(s)	75, 593, 823, 824
BseMII	CTCAG	3 cut(s)	880, 916, 917
BseNI	ACTGG	2 cut(s)	730, 776
BseRI	GAGGAG	2 cut(s)	323, 821
BseX3I	CGGCCG	1 cut(s)	254
BseXI	GCAGC	2 cut(s)	624, 632
Bsh1236I	CGCG	1 cut(s)	265
Bsh1285I	CGRYCG	1 cut(s)	257
BshFI	GGCC	5 cut(s)	68, 128, 134, 158, 256
BshNI	GGYRCC	1 cut(s)	93
BsiEI	CGRYCG	1 cut(s)	257
BsiHKCI	CYCGRG	1 cut(s)	713
BsiSI	CCGG	5 cut(s)	98, 110, 278, 497, 554
BslI	CCNNNNNNNGG	4 cut(s)	75, 593, 823, 824
BsmAI	GTCTC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	834
BsnI	GGCC	5 cut(s)	68, 128, 134, 158, 256
BsoBI	CYCGRG	1 cut(s)	713
Bsp13I	TCCGGA	1 cut(s)	496
Bsp1720I	GCTNAGC	1 cut(s)	902
BspANI	GGCC	5 cut(s)	68, 128, 134, 158, 256
BspCNI	CTCAG	3 cut(s)	879, 915, 918
BspEI	TCCGGA	1 cut(s)	496
BspFNI	CGCG	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	95, 276
BspMAI	CTGCAG	1 cut(s)	622
BspPI	GGATC	5 cut(s)	170, 456, 808, 839, 878
BspT107I	GGYRCC	1 cut(s)	93
BsrI	ACTGG	2 cut(s)	730, 776
BssECI	CCNNGG	2 cut(s)	129, 263
Bst2UI	CCWGG	3 cut(s)	50, 609, 798
Bst4CI	ACNGT	1 cut(s)	493
Bst6I	CTCTTC	1 cut(s)	383
BstC8I	GCNNGC	3 cut(s)	81, 270, 323
BstDEI	CTNAG	5 cut(s)	170, 573, 866, 902, 926
BstDSI	CCRYGG	1 cut(s)	263
BstENI	CCTNNNNNAGG	1 cut(s)	73
BstF5I	GGATG	4 cut(s)	286, 505, 649, 679
BstFNI	CGCG	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	908
BstMAI	GTCTC	1 cut(s)	242
BstMCI	CGRYCG	1 cut(s)	257
BstMWI	GCNNNNNNNGC	4 cut(s)	262, 265, 360, 363
BstNI	CCWGG	3 cut(s)	50, 609, 798
BstSCI	CCNGG	7 cut(s)	48, 96, 108, 276, 553, 607, 796
BstSFI	CTRYAG	1 cut(s)	618
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	2 cut(s)	624, 632
BstV2I	GAAGAC	1 cut(s)	347
BstX2I	RGATCY	3 cut(s)	192, 448, 844
BstXI	CCANNNNNNTGG	1 cut(s)	608
BstYI	RGATCY	3 cut(s)	192, 448, 844
BstZI	CGGCCG	1 cut(s)	254
Bsu36I	CCTNAGG	1 cut(s)	866
BsuRI	GGCC	5 cut(s)	68, 128, 134, 158, 256
BtgI	CCRYGG	1 cut(s)	263
BtgZI	GCGATG	1 cut(s)	98
BtrI	CACGTC	2 cut(s)	58, 202
BtsCI	GGATG	4 cut(s)	286, 505, 649, 679
BtsIMutI	CAGTG	1 cut(s)	723
Cac8I	GCNNGC	3 cut(s)	81, 270, 323
CfoI	GCGC	1 cut(s)	908
Cfr13I	GGNCC	1 cut(s)	274
Cfr42I	CCGCGG	1 cut(s)	266
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	3 cut(s)	205, 570, 764
CviAII	CATG	1 cut(s)	656
CviQI	GTAC	3 cut(s)	205, 570, 764
DdeI	CTNAG	5 cut(s)	170, 573, 866, 902, 926
EaeI	YGGCCR	1 cut(s)	254
EagI	CGGCCG	1 cut(s)	254
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
EciI	GGCGGA	5 cut(s)	128, 260, 287, 372, 381
EclXI	CGGCCG	1 cut(s)	254
Eco147I	AGGCCT	2 cut(s)	68, 158
Eco32I	GATATC	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	274
Eco52I	CGGCCG	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	47
Eco81I	CCTNAGG	1 cut(s)	866
Eco88I	CYCGRG	1 cut(s)	713
EcoNI	CCTNNNNNAGG	1 cut(s)	73
EcoRII	CCWGG	3 cut(s)	48, 607, 796
EcoRV	GATATC	1 cut(s)	547
FaeI	CATG	1 cut(s)	659
FaiI	YATR	6 cut(s)	18, 287, 657, 699, 788, 804
FatI	CATG	1 cut(s)	655
FauI	CCCGC	2 cut(s)	261, 392
FbaI	TGATCA	1 cut(s)	694
FokI	GGATG	4 cut(s)	293, 512, 656, 686
FspBI	CTAG	2 cut(s)	465, 938
GlaI	GCGC	1 cut(s)	907
HaeIII	GGCC	5 cut(s)	68, 128, 134, 158, 256
HapII	CCGG	5 cut(s)	98, 110, 278, 497, 554
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	908
Hin1II	CATG	1 cut(s)	659
Hin6I	GCGC	1 cut(s)	906
HinP1I	GCGC	1 cut(s)	906
HincII	GTYRAC	2 cut(s)	10, 705
HindII	GTYRAC	2 cut(s)	10, 705
HinfI	GANTC	1 cut(s)	382
HpaI	GTTAAC	1 cut(s)	705
HpaII	CCGG	5 cut(s)	98, 110, 278, 497, 554
HphI	GGTGA	2 cut(s)	823, 953
Hpy166II	GTNNAC	4 cut(s)	10, 205, 666, 705
Hpy188I	TCNGA	7 cut(s)	27, 192, 381, 387, 744, 922, 927
Hpy188III	TCNNGA	4 cut(s)	486, 497, 781, 868
Hpy8I	GTNNAC	4 cut(s)	10, 205, 666, 705
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	7 cut(s)	58, 209, 400, 559, 586, 753, 924
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4IV	ACGT	3 cut(s)	57, 201, 581
HpyCH4V	TGCA	1 cut(s)	620
HpyF10VI	GCNNNNNNNGC	4 cut(s)	262, 265, 360, 363
HpyF3I	CTNAG	5 cut(s)	170, 573, 866, 902, 926
HpySE526I	ACGT	3 cut(s)	57, 201, 581
Hsp92II	CATG	1 cut(s)	659
HspAI	GCGC	1 cut(s)	906
Kpn2I	TCCGGA	1 cut(s)	496
Ksp22I	TGATCA	1 cut(s)	694
KspAI	GTTAAC	1 cut(s)	705
KspI	CCGCGG	1 cut(s)	266
LmnI	GCTCC	1 cut(s)	310
Lsp1109I	GCAGC	2 cut(s)	624, 632
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	2 cut(s)	465, 938
MaeII	ACGT	3 cut(s)	57, 201, 581
MboII	GAAGA	6 cut(s)	73, 352, 400, 415, 490, 574
MflI	RGATCY	3 cut(s)	192, 448, 844
MlyI	GAGTC	1 cut(s)	391
MmeI	TCCRAC	2 cut(s)	359, 539
MroI	TCCGGA	1 cut(s)	496
MseI	TTAA	3 cut(s)	336, 536, 704
MspA1I	CMGCKG	2 cut(s)	265, 623
MspI	CCGG	5 cut(s)	98, 110, 278, 497, 554
MspR9I	CCNGG	7 cut(s)	50, 98, 110, 278, 555, 609, 798
Mva1269I	GAATGC	1 cut(s)	834
MvaI	CCWGG	3 cut(s)	50, 609, 798
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	4 cut(s)	262, 265, 360, 363
NciI	CCSGG	4 cut(s)	98, 110, 278, 555
NlaIII	CATG	1 cut(s)	659
NlaIV	GGNNCC	2 cut(s)	95, 276
NmeAIII	GCCGAG	1 cut(s)	154
PaeR7I	CTCGAG	1 cut(s)	713
PceI	AGGCCT	2 cut(s)	68, 158
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PctI	GAATGC	1 cut(s)	834
PleI	GAGTC	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	390
Psp6I	CCWGG	3 cut(s)	48, 607, 796
PspGI	CCWGG	3 cut(s)	48, 607, 796
PspN4I	GGNNCC	2 cut(s)	95, 276
PspPI	GGNCC	1 cut(s)	274
PspXI	VCTCGAGB	1 cut(s)	713
PstI	CTGCAG	1 cut(s)	622
PsuI	RGATCY	3 cut(s)	192, 448, 844
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	3 cut(s)	206, 571, 765
RsaNI	GTAC	3 cut(s)	205, 570, 764
SacII	CCGCGG	1 cut(s)	266
SaqAI	TTAA	3 cut(s)	336, 536, 704
Sau96I	GGNCC	1 cut(s)	274
SchI	GAGTC	1 cut(s)	391
ScrFI	CCNGG	7 cut(s)	50, 98, 110, 278, 555, 609, 798
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	618
Sfr274I	CTCGAG	1 cut(s)	713
Sfr303I	CCGCGG	1 cut(s)	266
SgrBI	CCGCGG	1 cut(s)	266
SinI	GGWCC	1 cut(s)	274
SlaI	CTCGAG	1 cut(s)	713
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
SseBI	AGGCCT	2 cut(s)	68, 158
SspMI	CTAG	2 cut(s)	465, 938
StuI	AGGCCT	2 cut(s)	68, 158
StyD4I	CCNGG	7 cut(s)	48, 96, 108, 276, 553, 607, 796
TaaI	ACNGT	1 cut(s)	493
TaiI	ACGT	3 cut(s)	60, 204, 584
TaqI	TCGA	2 cut(s)	485, 714
TauI	GCSGC	8 cut(s)	245, 259, 262, 265, 268, 357, 366, 416
Tru1I	TTAA	3 cut(s)	336, 536, 704
Tru9I	TTAA	3 cut(s)	336, 536, 704
TscAI	CASTG	1 cut(s)	730
TseI	GCWGC	2 cut(s)	612, 620
TspDTI	ATGAA	2 cut(s)	101, 491
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	1 cut(s)	730
VpaK11BI	GGWCC	1 cut(s)	274
XagI	CCTNNNNNAGG	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	713
XspI	CTAG	2 cut(s)	465, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.