Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0010653

Physical Location & Seq

Genomic Coordinates Forward (+)

68245491 .. 68248835

Gene Structure 3345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG447900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCAGTTGACTACTACGCTGTTCTGAAGTTGACCCGGAACGCGAACCAGGAGGACGTGAAGAAGGCGTACAAGAGGTTGGCCATGAAGTGGCACCCGGATAAGAATCCGGTCGACCACAAGGAGGCGGAGGCCAAGTTCAAGCAAGTATGTGAGGCCTACGATGTGCTCAGTGATCCGCAGAAGCGTCAGATCTACGACGTGTACGGCGAGGAGGGACTGAATGATGAGGTTGAGTTTGATGTGGCGCCGCCGCCGCCGAGGAGGTCGGAGCCGGATGATATTTTTAATGAGTTTTTCGAGGACCGGAATAGCTGGCAGAGGGCGTTTAAGAAGACTTGTAATGGCGGCGGCGGCGGGAGTGGGAGGAGTCAGAAGAGCGGTGGTGGGAAGAAGGTTGCGGCGGTGGAGAGTAAGCTGGCGTGTAGTTTGGAGGATCTTTACAAGGGGGCGAGAAGGAAAATGAGGATTTCGAGAACTGTTCCTGATAATTTTGGCAAGTCAAAGACAATTGAGGAAACCTTAAAGATTGATATCAAGCCAGGATGGAAGAAGGGTACTAAGATCACGTTTCCAGAGAAGGGAATCCAAGAACCTGGCAGCTCTGCAGCAGATCTTATTTTCGTCGTGGACGAGAAACCCCATGATGTGTTCAAGAGGGATGGGAATGATCTTGTGGTCGATCATAAGTTAACTCTACTCGAGGCTCTCACTGGAACATTCGTCAATCTGACAACCTTGGATGGAAGGGTTCTCCCTATCCCAGTCAGGAACATAATAAATCCTGGTTATGAGGAGGTGATCCCTAATGAGGGAATGCCAATATCAAAAGATCCCACCAAGAAAGGAAACCTCAGGATCAAGTTTGATGTTGTCTTTCCATCAAAGCTCAGCGCACAACAGAGATCTGATCTGAGAAGAGTGCTAGGTGAAGTTGATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

314

Amino Acids

35.29

Weight (kDa)

8.7

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 67	6.3e-26	DnaJ domain
DnaJ_C	PF01556	136 - 294	4.2e-39	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10350 AT1G59725
fragaria_vesca	FvH4_4g35640
malus_domestica	MD13G1081500.v1.1 MD13G1218800.v1.1 MD16G1080500.v1.1
prunus_persica	Prupe.1G265500_v2.0.a1 Prupe.1G265500_v2.0.a1
pyrus_communis	pycom13g07030 pycom16g06970
rosa_chinensis	RchiOBHm_Chr4g0445261
rosa_laevigata	RLG00000005754
rosa_multiflora	Rmu_sc0000050.1_g000026
rosa_roxburghii	Rroxscaffold_5G00385770
rosa_rugosa	Rorug04G0360000
rosa_samantha	Rh4AG421300 Rh4BG433200 Rh4CG447900 Rh4DG429300
rosa_wichuraiana	Rw4G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	93, 247
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccBSI	CCGCTC	1 cut(s)	381
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	44
AclWI	GGATC	5 cut(s)	170, 444, 796, 827, 866
AcoI	YGGCCR	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	248
AfaI	GTAC	3 cut(s)	71, 206, 559
AfiI	CCNNNNNNNGG	5 cut(s)	90, 124, 581, 811, 812
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	2 cut(s)	142, 655
AjiI	CACGTC	2 cut(s)	58, 202
AjnI	CCWGG	4 cut(s)	48, 541, 595, 784
AloI	GAACNNNNNNTCC	2 cut(s)	122, 154
AluBI	AGCT	4 cut(s)	315, 418, 603, 889
AluI	AGCT	4 cut(s)	315, 418, 603, 889
Alw21I	GWGCWC	1 cut(s)	171
AlwI	GGATC	5 cut(s)	170, 444, 796, 827, 866
Ama87I	CYCGRG	1 cut(s)	701
AoxI	GGCC	3 cut(s)	81, 132, 156
ApeKI	GCWGC	2 cut(s)	600, 608
AspLEI	GCGC	2 cut(s)	250, 896
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	2 cut(s)	37, 98
AsuHPI	GGTGA	2 cut(s)	811, 941
AvaI	CYCGRG	1 cut(s)	701
AvaII	GGWCC	1 cut(s)	304
AxyI	CCTNAGG	1 cut(s)	854
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	2 cut(s)	93, 247
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbsI	GAAGAC	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	612, 620
BccI	CCATC	4 cut(s)	540, 656, 737, 889
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	4 cut(s)	50, 543, 597, 786
BcnI	CCSGG	2 cut(s)	37, 98
BfaI	CTAG	1 cut(s)	926
BfmI	CTRYAG	1 cut(s)	606
BfoI	RGCGCY	1 cut(s)	251
BglII	AGATCT	3 cut(s)	192, 613, 905
BisI	GCNGC	9 cut(s)	251, 254, 257, 349, 352, 355, 402, 601, 609
BlpI	GCTNAGC	1 cut(s)	890
BlsI	GCNGC	9 cut(s)	252, 255, 258, 350, 353, 356, 403, 602, 610
Bme1390I	CCNGG	6 cut(s)	37, 50, 98, 543, 597, 786
Bme18I	GGWCC	1 cut(s)	304
BmeT110I	CYCGRG	1 cut(s)	701
BmgBI	CACGTC	2 cut(s)	58, 202
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	3 cut(s)	95, 249, 273
BmrFI	CCNGG	6 cut(s)	37, 50, 98, 543, 597, 786
BmrI	ACTGGG	1 cut(s)	758
BmuI	ACTGGG	1 cut(s)	758
BpiI	GAAGAC	1 cut(s)	341
Bpu1102I	GCTNAGC	1 cut(s)	890
BpuMI	CCSGG	2 cut(s)	37, 98
BsaBI	GATNNNNATC	2 cut(s)	105, 533
BsaHI	GRCGYC	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	260, 738
BsaWI	WCCGGW	2 cut(s)	109, 306
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	5 cut(s)	90, 124, 581, 811, 812
Bse1I	ACTGG	2 cut(s)	718, 764
Bse21I	CCTNAGG	1 cut(s)	854
Bse8I	GATNNNNATC	2 cut(s)	105, 533
BseBI	CCWGG	4 cut(s)	50, 543, 597, 786
BseDI	CCNNGG	2 cut(s)	260, 738
BseGI	GGATG	4 cut(s)	283, 551, 667, 748
BseJI	GATNNNNATC	2 cut(s)	105, 533
BseLI	CCNNNNNNNGG	5 cut(s)	90, 124, 581, 811, 812
BseMII	CTCAG	4 cut(s)	184, 868, 904, 905
BseNI	ACTGG	2 cut(s)	718, 764
BseRI	GAGGAG	4 cut(s)	227, 277, 382, 809
BseXI	GCAGC	2 cut(s)	612, 620
Bsh1236I	CGCG	1 cut(s)	44
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	3 cut(s)	83, 134, 158
BshNI	GGYRCC	2 cut(s)	93, 247
BsiEI	CGRYCG	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	701
BsiSI	CCGG	5 cut(s)	37, 98, 110, 275, 307
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	5 cut(s)	90, 124, 581, 811, 812
BsmFI	GGGAC	1 cut(s)	231
BsmI	GAATGC	1 cut(s)	822
BsnI	GGCC	3 cut(s)	83, 134, 158
BsoBI	CYCGRG	1 cut(s)	701
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp1720I	GCTNAGC	1 cut(s)	890
BspANI	GGCC	3 cut(s)	83, 134, 158
BspCNI	CTCAG	4 cut(s)	183, 867, 903, 906
BspFNI	CGCG	1 cut(s)	44
BspLI	GGNNCC	3 cut(s)	95, 249, 273
BspMAI	CTGCAG	1 cut(s)	610
BspPI	GGATC	5 cut(s)	170, 444, 796, 827, 866
BspQI	GCTCTTC	1 cut(s)	371
BspT107I	GGYRCC	2 cut(s)	93, 247
BsrBI	CCGCTC	1 cut(s)	381
BsrI	ACTGG	2 cut(s)	718, 764
BssECI	CCNNGG	2 cut(s)	260, 738
BssNI	GRCGYC	1 cut(s)	248
BssT1I	CCWWGG	1 cut(s)	738
Bst2UI	CCWGG	4 cut(s)	50, 543, 597, 786
Bst4CI	ACNGT	1 cut(s)	481
Bst6I	CTCTTC	2 cut(s)	371, 913
BstACI	GRCGYC	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	317, 420
BstDEI	CTNAG	5 cut(s)	170, 561, 854, 890, 914
BstF5I	GGATG	4 cut(s)	283, 551, 667, 748
BstFNI	CGCG	1 cut(s)	44
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	2 cut(s)	250, 896
BstMCI	CGRYCG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 354
BstNI	CCWGG	4 cut(s)	50, 543, 597, 786
BstSCI	CCNGG	6 cut(s)	35, 48, 96, 541, 595, 784
BstSFI	CTRYAG	1 cut(s)	606
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	2 cut(s)	612, 620
BstV2I	GAAGAC	1 cut(s)	341
BstX2I	RGATCY	5 cut(s)	192, 436, 613, 832, 905
BstXI	CCANNNNNNTGG	1 cut(s)	596
BstYI	RGATCY	5 cut(s)	192, 436, 613, 832, 905
Bsu36I	CCTNAGG	1 cut(s)	854
BsuRI	GGCC	3 cut(s)	83, 134, 158
BtrI	CACGTC	2 cut(s)	58, 202
BtsCI	GGATG	4 cut(s)	283, 551, 667, 748
BtsIMutI	CAGTG	2 cut(s)	178, 711
Cac8I	GCNNGC	2 cut(s)	317, 420
CfoI	GCGC	2 cut(s)	250, 896
Cfr13I	GGNCC	1 cut(s)	304
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	3 cut(s)	70, 205, 558
CviAII	CATG	2 cut(s)	85, 644
CviQI	GTAC	3 cut(s)	70, 205, 558
DdeI	CTNAG	5 cut(s)	170, 561, 854, 890, 914
DinI	GGCGCC	1 cut(s)	249
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	371, 913
EarI	CTCTTC	2 cut(s)	371, 913
EciI	GGCGGA	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	738
Eco147I	AGGCCT	1 cut(s)	158
Eco32I	GATATC	1 cut(s)	535
Eco47I	GGWCC	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	47
Eco81I	CCTNAGG	1 cut(s)	854
Eco88I	CYCGRG	1 cut(s)	701
EcoRII	CCWGG	4 cut(s)	48, 541, 595, 784
EcoRV	GATATC	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	738
EgeI	GGCGCC	1 cut(s)	249
EheI	GGCGCC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	738
FaeI	CATG	2 cut(s)	88, 647
FaiI	YATR	6 cut(s)	86, 151, 645, 687, 776, 792
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	2 cut(s)	84, 643
FauI	CCCGC	1 cut(s)	350
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	9 cut(s)	251, 254, 257, 349, 352, 355, 402, 601, 609
FokI	GGATG	4 cut(s)	290, 558, 674, 755
Fsp4HI	GCNGC	9 cut(s)	251, 254, 257, 349, 352, 355, 402, 601, 609
FspBI	CTAG	1 cut(s)	926
GlaI	GCGC	2 cut(s)	249, 895
GluI	GCNGC	9 cut(s)	251, 254, 257, 349, 352, 355, 402, 601, 609
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	3 cut(s)	83, 134, 158
HapII	CCGG	5 cut(s)	37, 98, 110, 275, 307
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	2 cut(s)	250, 896
Hin1I	GRCGYC	1 cut(s)	248
Hin1II	CATG	2 cut(s)	88, 647
Hin6I	GCGC	2 cut(s)	248, 894
HinP1I	GCGC	2 cut(s)	248, 894
HincII	GTYRAC	4 cut(s)	10, 33, 115, 693
HindII	GTYRAC	4 cut(s)	10, 33, 115, 693
HinfI	GANTC	3 cut(s)	106, 370, 585
HpaI	GTTAAC	1 cut(s)	693
HpaII	CCGG	5 cut(s)	37, 98, 110, 275, 307
HphI	GGTGA	2 cut(s)	811, 941
Hpy166II	GTNNAC	6 cut(s)	10, 33, 115, 205, 631, 693
Hpy188I	TCNGA	7 cut(s)	27, 192, 271, 375, 732, 910, 915
Hpy188III	TCNNGA	6 cut(s)	474, 485, 575, 655, 769, 856
Hpy8I	GTNNAC	6 cut(s)	10, 33, 115, 205, 631, 693
Hpy99I	CGWCG	2 cut(s)	203, 629
HpyAV	CCTTC	6 cut(s)	58, 388, 450, 547, 574, 741
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4IV	ACGT	3 cut(s)	57, 201, 569
HpyCH4V	TGCA	1 cut(s)	608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 354
HpyF3I	CTNAG	5 cut(s)	170, 561, 854, 890, 914
HpySE526I	ACGT	3 cut(s)	57, 201, 569
Hsp92I	GRCGYC	1 cut(s)	248
Hsp92II	CATG	2 cut(s)	88, 647
HspAI	GCGC	2 cut(s)	248, 894
KasI	GGCGCC	1 cut(s)	247
KspAI	GTTAAC	1 cut(s)	693
LguI	GCTCTTC	1 cut(s)	371
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	2 cut(s)	612, 620
MaeI	CTAG	1 cut(s)	926
MaeII	ACGT	3 cut(s)	57, 201, 569
MbiI	CCGCTC	1 cut(s)	381
MboII	GAAGA	6 cut(s)	73, 346, 388, 403, 562, 930
MfeI	CAATTG	1 cut(s)	510
MflI	RGATCY	5 cut(s)	192, 436, 613, 832, 905
MhlI	GDGCHC	1 cut(s)	171
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	2 cut(s)	490, 510
MluNI	TGGCCA	1 cut(s)	83
Mly113I	GGCGCC	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	379
MmeI	TCCRAC	1 cut(s)	249
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	4 cut(s)	288, 330, 524, 692
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	5 cut(s)	37, 98, 110, 275, 307
MspR9I	CCNGG	6 cut(s)	37, 50, 98, 543, 597, 786
MunI	CAATTG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	822
MvaI	CCWGG	4 cut(s)	50, 543, 597, 786
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	256, 354
NarI	GGCGCC	1 cut(s)	248
NciI	CCSGG	2 cut(s)	37, 98
NlaIII	CATG	2 cut(s)	88, 647
NlaIV	GGNNCC	3 cut(s)	95, 249, 273
NmeAIII	GCCGAG	1 cut(s)	285
PaeR7I	CTCGAG	1 cut(s)	701
PceI	AGGCCT	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 630
PctI	GAATGC	1 cut(s)	822
PfeI	GAWTC	2 cut(s)	106, 585
PflMI	CCANNNNNTGG	1 cut(s)	90
PkrI	GCNGC	9 cut(s)	252, 255, 258, 350, 353, 356, 403, 602, 610
PleI	GAGTC	1 cut(s)	378
PluTI	GGCGCC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	378
Psp6I	CCWGG	4 cut(s)	48, 541, 595, 784
PspGI	CCWGG	4 cut(s)	48, 541, 595, 784
PspN4I	GGNNCC	3 cut(s)	95, 249, 273
PspPI	GGNCC	1 cut(s)	304
PspXI	VCTCGAGB	1 cut(s)	701
PstI	CTGCAG	1 cut(s)	610
PsuI	RGATCY	5 cut(s)	192, 436, 613, 832, 905
RsaI	GTAC	3 cut(s)	71, 206, 559
RsaNI	GTAC	3 cut(s)	70, 205, 558
SalI	GTCGAC	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	371
SaqAI	TTAA	4 cut(s)	288, 330, 524, 692
SatI	GCNGC	9 cut(s)	251, 254, 257, 349, 352, 355, 402, 601, 609
Sau96I	GGNCC	1 cut(s)	304
SchI	GAGTC	1 cut(s)	379
ScrFI	CCNGG	6 cut(s)	37, 50, 98, 543, 597, 786
SduI	GDGCHC	1 cut(s)	171
SfcI	CTRYAG	1 cut(s)	606
SfoI	GGCGCC	1 cut(s)	249
Sfr274I	CTCGAG	1 cut(s)	701
SinI	GGWCC	1 cut(s)	304
SlaI	CTCGAG	1 cut(s)	701
SmlI	CTYRAG	1 cut(s)	701
SmoI	CTYRAG	1 cut(s)	701
Sse9I	AATT	2 cut(s)	490, 510
SseBI	AGGCCT	1 cut(s)	158
SspDI	GGCGCC	1 cut(s)	247
SspMI	CTAG	1 cut(s)	926
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	6 cut(s)	35, 48, 96, 541, 595, 784
StyI	CCWWGG	1 cut(s)	738
TaaI	ACNGT	1 cut(s)	481
TaiI	ACGT	3 cut(s)	60, 204, 572
TaqI	TCGA	5 cut(s)	114, 300, 473, 681, 702
TasI	AATT	2 cut(s)	490, 510
TauI	GCSGC	7 cut(s)	253, 256, 259, 351, 354, 357, 404
TfiI	GAWTC	2 cut(s)	106, 585
Tru1I	TTAA	4 cut(s)	288, 330, 524, 692
Tru9I	TTAA	4 cut(s)	288, 330, 524, 692
TscAI	CASTG	2 cut(s)	178, 718
TseI	GCWGC	2 cut(s)	600, 608
TspDTI	ATGAA	1 cut(s)	101
TspRI	CASTG	2 cut(s)	178, 718
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	304
XhoI	CTCGAG	1 cut(s)	701
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.