Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010653

Physical Location & Seq

Genomic Coordinates Reverse (-)

4523203 .. 4524645

Gene Structure 1443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGGTGTGGATTTCTACAACGTGCTGAGGGTGAACCGGAACGCGACGCAGGAGGACCTGAAGAAGGCGTACAAGAAGCTGGCGATGAGGTGGCACCCCGACAAGAACCCAGTCGACAACGAGGAAGCGGAGGCCAAGTTCAAGCAAGTGTGCCAGGCGTACGATGTTCTCAGCGACCCCCAGCGGCGCCAGATCTACGACATCTACGGCGAGGAGGGGCTCAATTGCGGCGACCCGGAAGACCTTTTTGCCGAGTTTTTCGGCGGATCTGGCGGCGTCGGGGACAGGGCGTTCAAGAAGAGCAGTGTGAATGGTGCAGGGCGTAATGGTAATTTGAAGAATAAGAAGGTTGCGGCGATTGAGAGCAAGTTGACGTGCAGTTTGGAGGATCTTTACAGAGGCGCGAGGAGGAAGATGAGGATTTCGAGAACCGTTCCTGATGAGTTCGGTAAGCCAAAGACTATTGAGGAAACCCTAAAGATAGACATCAAGCCTGGCTGGAAGAAGGGTACAAAGATCACATTCCCAGAGAAAGGCAACCAAGAACCCGGCTCTTCTCCGGCTGATCTCATTTTCGTCGTTGACGAGAAGCCCCACCATCTTTTCAAGCGTGACGGGAATGATCTTATGGTCACTCAGAAACTCTCTCTACTCGAGGCTCTCACCGGAGCGTTCGTCAATCTGACAATGTTGGACGGAAGGGTTCTCGTGATCCCGGTGAAGAACATTATTATCAAACCTGGCCATGAGGAGGTGGTTCCTAATGAGGGAATGCCAATCTCTAAAGATCCGACTAAGAAAGGAAACCTAAGGGTCAAGTTCGACGTCGTCTTTCCGGCGAAGCTTAGTGCAGAGCAGAAGGATGATCTGAGGAGAGTGCTGGGTGGGGGTGATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

300

Amino Acids

33.37

Weight (kDa)

8.99

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10350 AT1G59725
fragaria_vesca	FvH4_4g35640
malus_domestica	MD13G1081500.v1.1 MD13G1218800.v1.1 MD16G1080500.v1.1
prunus_persica	Prupe.1G265500_v2.0.a1 Prupe.1G265500_v2.0.a1
pyrus_communis	pycom13g07030 pycom16g06970
rosa_chinensis	RchiOBHm_Chr4g0445261
rosa_laevigata	RLG00000005754
rosa_multiflora	Rmu_sc0000050.1_g000026
rosa_roxburghii	Rroxscaffold_5G00385770
rosa_rugosa	Rorug04G0360000
rosa_samantha	Rh4AG421300 Rh4BG433200 Rh4CG447900 Rh4DG429300
rosa_wichuraiana	Rw4G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	828
AccB1I	GGYRCC	2 cut(s)	93, 186
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	2 cut(s)	44, 404
AciI	CCGC	6 cut(s)	128, 184, 228, 264, 273, 353
AclWI	GGATC	4 cut(s)	274, 396, 706, 782
AcoI	YGGCCR	1 cut(s)	742
AcuI	CTGAAG	1 cut(s)	80
AcyI	GRCGYC	3 cut(s)	187, 276, 825
AfaI	GTAC	3 cut(s)	71, 161, 511
AfiI	CCNNNNNNNGG	4 cut(s)	64, 533, 751, 767
AgsI	TTSAA	4 cut(s)	142, 295, 337, 607
AjiI	CACGTC	1 cut(s)	375
AjnI	CCWGG	3 cut(s)	153, 493, 739
AloI	GAACNNNNNNTCC	4 cut(s)	122, 154, 275, 307
AluBI	AGCT	2 cut(s)	79, 844
AluI	AGCT	2 cut(s)	79, 844
AlwI	GGATC	4 cut(s)	274, 396, 706, 782
Ama87I	CYCGRG	1 cut(s)	653
AoxI	GGCC	2 cut(s)	132, 742
ArsI	GACNNNNNNTTYG	2 cut(s)	364, 396
AspLEI	GCGC	2 cut(s)	189, 404
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	3 cut(s)	236, 549, 716
AsuHPI	GGTGA	3 cut(s)	43, 655, 730
AvaI	CYCGRG	1 cut(s)	653
AvaII	GGWCC	1 cut(s)	55
AxyI	CCTNAGG	1 cut(s)	809
BalI	TGGCCA	1 cut(s)	744
BanI	GGYRCC	2 cut(s)	93, 186
BanII	GRGCYC	1 cut(s)	222
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BauI	CACGAG	1 cut(s)	707
BbsI	GAAGAC	1 cut(s)	246
BbvCI	CCTCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	606
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	3 cut(s)	155, 495, 741
BcnI	CCSGG	3 cut(s)	236, 549, 716
BfoI	RGCGCY	1 cut(s)	190
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	4 cut(s)	185, 229, 274, 354
BlsI	GCNGC	4 cut(s)	186, 230, 275, 355
Bme1390I	CCNGG	6 cut(s)	155, 236, 495, 549, 716, 741
Bme18I	GGWCC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	653
BmgBI	CACGTC	1 cut(s)	375
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	3 cut(s)	95, 188, 759
BmrFI	CCNGG	6 cut(s)	155, 236, 495, 549, 716, 741
BmrI	ACTGGG	1 cut(s)	104
BmuI	ACTGGG	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	26
BpuMI	CCSGG	3 cut(s)	236, 549, 716
BsaBI	GATNNNNATC	1 cut(s)	485
BsaHI	GRCGYC	3 cut(s)	187, 276, 825
BsaWI	WCCGGW	2 cut(s)	36, 665
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 660, 690
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 533, 751, 767
Bse1I	ACTGG	1 cut(s)	110
Bse21I	CCTNAGG	1 cut(s)	809
Bse8I	GATNNNNATC	1 cut(s)	485
BseBI	CCWGG	3 cut(s)	155, 495, 741
BseGI	GGATG	1 cut(s)	868
BseJI	GATNNNNATC	1 cut(s)	485
BseLI	CCNNNNNNNGG	4 cut(s)	64, 533, 751, 767
BseMII	CTCAG	4 cut(s)	17, 184, 650, 860
BseNI	ACTGG	1 cut(s)	110
BseRI	GAGGAG	4 cut(s)	227, 421, 764, 886
BseYI	CCCAGC	2 cut(s)	180, 880
BsgI	GTGCAG	3 cut(s)	336, 397, 870
Bsh1236I	CGCG	2 cut(s)	44, 404
BshFI	GGCC	2 cut(s)	134, 744
BshNI	GGYRCC	2 cut(s)	93, 186
BsiHKCI	CYCGRG	1 cut(s)	653
BsiSI	CCGG	7 cut(s)	37, 236, 549, 560, 666, 716, 836
BsiWI	CGTACG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	4 cut(s)	64, 533, 751, 767
BsmFI	GGGAC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	777
BsnI	GGCC	2 cut(s)	134, 744
BsoBI	CYCGRG	1 cut(s)	653
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	9 cut(s)	192, 266, 388, 516, 565, 622, 711, 787, 865
BspACI	CCGC	6 cut(s)	128, 184, 228, 264, 273, 353
BspANI	GGCC	2 cut(s)	134, 744
BspCNI	CTCAG	4 cut(s)	18, 183, 649, 861
BspFNI	CGCG	2 cut(s)	44, 404
BspLI	GGNNCC	3 cut(s)	95, 188, 759
BspPI	GGATC	4 cut(s)	274, 396, 706, 782
BspQI	GCTCTTC	2 cut(s)	293, 559
BspT107I	GGYRCC	2 cut(s)	93, 186
BsrI	ACTGG	1 cut(s)	110
BssMI	GATC	9 cut(s)	192, 266, 388, 516, 565, 622, 711, 787, 865
BssNI	GRCGYC	3 cut(s)	187, 276, 825
BssSI	CACGAG	1 cut(s)	707
Bst2BI	CACGAG	1 cut(s)	707
Bst2UI	CCWGG	3 cut(s)	155, 495, 741
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	2 cut(s)	293, 559
BstACI	GRCGYC	3 cut(s)	187, 276, 825
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	7 cut(s)	26, 170, 636, 795, 809, 845, 869
BstENI	CCTNNNNNAGG	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	868
BstFNI	CGCG	2 cut(s)	44, 404
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	2 cut(s)	189, 404
BstKTI	GATC	9 cut(s)	195, 269, 391, 519, 568, 625, 714, 790, 868
BstMBI	GATC	9 cut(s)	192, 266, 388, 516, 565, 622, 711, 787, 865
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstNI	CCWGG	3 cut(s)	155, 495, 741
BstSCI	CCNGG	6 cut(s)	153, 234, 493, 547, 714, 739
BstUI	CGCG	2 cut(s)	44, 404
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	4 cut(s)	192, 266, 388, 787
BstYI	RGATCY	4 cut(s)	192, 266, 388, 787
Bsu36I	CCTNAGG	1 cut(s)	809
BsuRI	GGCC	2 cut(s)	134, 744
BtgZI	GCGATG	1 cut(s)	98
BtrI	CACGTC	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	868
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	81
CfoI	GCGC	2 cut(s)	189, 404
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	2 cut(s)	55, 265
Csp6I	GTAC	3 cut(s)	70, 160, 510
CviAII	CATG	1 cut(s)	746
CviQI	GTAC	3 cut(s)	70, 160, 510
DdeI	CTNAG	7 cut(s)	26, 170, 636, 795, 809, 845, 869
DinI	GGCGCC	1 cut(s)	188
DpnI	GATC	9 cut(s)	194, 268, 390, 518, 567, 624, 713, 789, 867
DpnII	GATC	9 cut(s)	192, 266, 388, 516, 565, 622, 711, 787, 865
EaeI	YGGCCR	1 cut(s)	742
Eam1104I	CTCTTC	2 cut(s)	293, 559
EarI	CTCTTC	2 cut(s)	293, 559
EciI	GGCGGA	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	80
Eco81I	CCTNAGG	1 cut(s)	809
Eco88I	CYCGRG	1 cut(s)	653
EcoNI	CCTNNNNNAGG	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRII	CCWGG	3 cut(s)	153, 493, 739
EcoT38I	GRGCYC	1 cut(s)	222
EgeI	GGCGCC	1 cut(s)	188
EheI	GGCGCC	1 cut(s)	188
FaeI	CATG	1 cut(s)	749
FaiI	YATR	2 cut(s)	629, 747
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	1 cut(s)	745
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	185, 229, 274, 354
FokI	GGATG	1 cut(s)	875
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	4 cut(s)	185, 229, 274, 354
GlaI	GCGC	2 cut(s)	188, 403
GluI	GCNGC	4 cut(s)	185, 229, 274, 354
GsaI	CCCAGC	2 cut(s)	184, 884
HaeII	RGCGCY	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	134, 744
HapII	CCGG	7 cut(s)	37, 236, 549, 560, 666, 716, 836
HgaI	GACGC	2 cut(s)	55, 265
HhaI	GCGC	2 cut(s)	189, 404
Hin1I	GRCGYC	3 cut(s)	187, 276, 825
Hin1II	CATG	1 cut(s)	749
Hin6I	GCGC	2 cut(s)	187, 402
HinP1I	GCGC	2 cut(s)	187, 402
HincII	GTYRAC	3 cut(s)	115, 372, 583
HindII	GTYRAC	3 cut(s)	115, 372, 583
HindIII	AAGCTT	1 cut(s)	842
HpaII	CCGG	7 cut(s)	37, 236, 549, 560, 666, 716, 836
HphI	GGTGA	3 cut(s)	43, 655, 730
Hpy166II	GTNNAC	4 cut(s)	34, 115, 372, 583
Hpy188I	TCNGA	4 cut(s)	639, 684, 792, 870
Hpy188III	TCNNGA	4 cut(s)	295, 426, 437, 709
Hpy8I	GTNNAC	4 cut(s)	34, 115, 372, 583
Hpy99I	CGWCG	5 cut(s)	49, 281, 581, 827, 830
HpyAV	CCTTC	5 cut(s)	58, 340, 499, 693, 853
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4IV	ACGT	3 cut(s)	21, 374, 825
HpyCH4V	TGCA	3 cut(s)	317, 378, 851
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	7 cut(s)	26, 170, 636, 795, 809, 845, 869
HpySE526I	ACGT	3 cut(s)	21, 374, 825
Hsp92I	GRCGYC	3 cut(s)	187, 276, 825
Hsp92II	CATG	1 cut(s)	749
HspAI	GCGC	2 cut(s)	187, 402
KasI	GGCGCC	1 cut(s)	186
Kzo9I	GATC	9 cut(s)	192, 266, 388, 516, 565, 622, 711, 787, 865
LguI	GCTCTTC	2 cut(s)	293, 559
LmnI	GCTCC	1 cut(s)	668
MaeII	ACGT	3 cut(s)	21, 374, 825
MaeIII	GTNAC	2 cut(s)	611, 631
MalI	GATC	9 cut(s)	194, 268, 390, 518, 567, 624, 713, 789, 867
MboI	GATC	9 cut(s)	192, 266, 388, 516, 565, 622, 711, 787, 865
MboII	GAAGA	8 cut(s)	73, 251, 310, 349, 424, 514, 546, 733
MfeI	CAATTG	1 cut(s)	223
MflI	RGATCY	4 cut(s)	192, 266, 388, 787
MhlI	GDGCHC	1 cut(s)	222
MlsI	TGGCCA	1 cut(s)	744
MluCI	AATT	2 cut(s)	223, 331
MluNI	TGGCCA	1 cut(s)	744
Mly113I	GGCGCC	1 cut(s)	187
MmeI	TCCRAC	2 cut(s)	672, 815
Mox20I	TGGCCA	1 cut(s)	744
MscI	TGGCCA	1 cut(s)	744
Msp20I	TGGCCA	1 cut(s)	744
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	7 cut(s)	37, 236, 549, 560, 666, 716, 836
MspR9I	CCNGG	6 cut(s)	155, 236, 495, 549, 716, 741
MunI	CAATTG	1 cut(s)	223
Mva1269I	GAATGC	1 cut(s)	777
MvaI	CCWGG	3 cut(s)	155, 495, 741
MvnI	CGCG	2 cut(s)	44, 404
MwoI	GCNNNNNNNGC	1 cut(s)	270
NarI	GGCGCC	1 cut(s)	187
NciI	CCSGG	3 cut(s)	236, 549, 716
NdeII	GATC	9 cut(s)	192, 266, 388, 516, 565, 622, 711, 787, 865
NlaIII	CATG	1 cut(s)	749
NlaIV	GGNNCC	3 cut(s)	95, 188, 759
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	2 cut(s)	611, 631
PaeR7I	CTCGAG	1 cut(s)	653
PciSI	GCTCTTC	2 cut(s)	293, 559
PcsI	WCGNNNNNNNCGW	1 cut(s)	582
PctI	GAATGC	1 cut(s)	777
Pfl23II	CGTACG	1 cut(s)	159
PflFI	GACNNNGTC	1 cut(s)	827
PkrI	GCNGC	4 cut(s)	186, 230, 275, 355
PluTI	GGCGCC	1 cut(s)	190
PpuMI	RGGWCCY	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	3 cut(s)	153, 493, 739
PspFI	CCCAGC	2 cut(s)	180, 880
PspGI	CCWGG	3 cut(s)	153, 493, 739
PspLI	CGTACG	1 cut(s)	159
PspN4I	GGNNCC	3 cut(s)	95, 188, 759
PspPI	GGNCC	1 cut(s)	55
PspPPI	RGGWCCY	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	653
PsuI	RGATCY	4 cut(s)	192, 266, 388, 787
PsyI	GACNNNGTC	1 cut(s)	827
RsaI	GTAC	3 cut(s)	71, 161, 511
RsaNI	GTAC	3 cut(s)	70, 160, 510
SalI	GTCGAC	1 cut(s)	113
SapI	GCTCTTC	2 cut(s)	293, 559
SatI	GCNGC	4 cut(s)	185, 229, 274, 354
Sau3AI	GATC	9 cut(s)	192, 266, 388, 516, 565, 622, 711, 787, 865
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	6 cut(s)	155, 236, 495, 549, 716, 741
SduI	GDGCHC	1 cut(s)	222
SfoI	GGCGCC	1 cut(s)	188
Sfr274I	CTCGAG	1 cut(s)	653
SinI	GGWCC	1 cut(s)	55
SlaI	CTCGAG	1 cut(s)	653
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
Sse9I	AATT	2 cut(s)	223, 331
SsiI	CCGC	6 cut(s)	128, 184, 228, 264, 273, 353
SspDI	GGCGCC	1 cut(s)	186
StyD4I	CCNGG	6 cut(s)	153, 234, 493, 547, 714, 739
TaaI	ACNGT	1 cut(s)	433
TaiI	ACGT	3 cut(s)	24, 377, 828
TaqI	TCGA	4 cut(s)	114, 425, 654, 822
TasI	AATT	2 cut(s)	223, 331
TauI	GCSGC	4 cut(s)	187, 231, 276, 356
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	2 cut(s)	611, 631
Tsp45I	GTSAC	2 cut(s)	611, 631
TspGWI	ACGGA	1 cut(s)	711
TspRI	CASTG	1 cut(s)	310
Tth111I	GACNNNGTC	1 cut(s)	827
VpaK11BI	GGWCC	1 cut(s)	55
XagI	CCTNNNNNAGG	1 cut(s)	62
XhoI	CTCGAG	1 cut(s)	653
XmiI	GTMKAC	1 cut(s)	114
ZraI	GACGTC	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.