Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0010653

Physical Location & Seq

Genomic Coordinates Forward (+)

63398804 .. 63400512

Gene Structure 1709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG429300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCAGTTGACTACTACGCTGTTCTGAAGTTGACCCGGAACGCGAACCAGGAGGACGTGAAGAAGGCGTACAAGAGGTTGGCCATGAAGTGGCACCCGGATAAGAACCCGGTCGACCACAAGGAGGCGGAGGCCAAGTTCAAGCAAGTATGTGAGGCCTACGATGTGCTCAGTGATCCGCAGAAGCGTCAGATCTACGACGTGTACGGCGAGGAGGGGCTGAATGATGAGGTTGAGTTTGATGTGGCGGCGCCGCCGCCGCCGCCGAGGAGGTCGGAGCCGGATGATATTTTTAATGAGTTTTTCGAGGACCAGAATAGCTGGCAGAGGGCGTTTAAGAAGACTTGTAATGGCGGCGGCGGGAGTGGGAGGAGTCAGAAGAGCGGTGGTGGGAAGAAGGCTGCGGCGGTGGAGAGTAAGCTGGCGTGTAGTTTGGAGGATCTTTACAAGGGGGCGAGAAGGAAAATGAGGATTTCGAGAACTGTTCCTGATAATTTTGGTAAGTCAAAGACAGTTGAGGAAACCTTAAAGATTGATATCAAGCCAGGATGGAAGAAGGGTACTAAGATCACGTTTCCAGAGAAGGGAAACCAAGAACCTGGCAGCTCTGCAGCAGATCTTATTTTCGTCGTGGACGAGAAACCCCATGATGTGTTCAAGAGGGATGGGAATGATCTTGTGGTTGATCATAAGTTAACTCTACTCGAGGCTCTCACTGGAACATTCATCAATCTGACAACCTTGGATGGAAGGGTTCTCCCTATCCCAGTCAGGAACATAATAAATCCTGGTTATGAGGAGGTGATCCCTAATGAGGGAATGCCAATATCAAAAGATCCCACTAAGAAAGGAAATCTCAGGATCAAGTTTGATGTTGTCTTTCCATCAAAGCTCAGCGCACAGCAGAGATCTGATCTGAGAAGAGTGCTAGGTGAAGTTGATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

315

Amino Acids

35.35

Weight (kDa)

8.51

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 67	6.3e-26	DnaJ domain
DnaJ_C	PF01556	137 - 295	2.1e-40	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10350 AT1G59725
fragaria_vesca	FvH4_4g35640
malus_domestica	MD13G1081500.v1.1 MD13G1218800.v1.1 MD16G1080500.v1.1
prunus_persica	Prupe.1G265500_v2.0.a1 Prupe.1G265500_v2.0.a1
pyrus_communis	pycom13g07030 pycom16g06970
rosa_chinensis	RchiOBHm_Chr4g0445261
rosa_laevigata	RLG00000005754
rosa_multiflora	Rmu_sc0000050.1_g000026
rosa_roxburghii	Rroxscaffold_5G00385770
rosa_rugosa	Rorug04G0360000
rosa_samantha	Rh4AG421300 Rh4BG433200 Rh4CG447900 Rh4DG429300
rosa_wichuraiana	Rw4G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	93, 250
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccBSI	CCGCTC	1 cut(s)	384
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	44
AclWI	GGATC	5 cut(s)	170, 447, 799, 830, 869
AcoI	YGGCCR	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	251
AfaI	GTAC	3 cut(s)	71, 206, 562
AfiI	CCNNNNNNNGG	5 cut(s)	90, 124, 584, 814, 815
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	2 cut(s)	142, 658
AjiI	CACGTC	2 cut(s)	58, 202
AjnI	CCWGG	4 cut(s)	48, 544, 598, 787
AloI	GAACNNNNNNTCC	2 cut(s)	122, 154
AluBI	AGCT	4 cut(s)	321, 421, 606, 892
AluI	AGCT	4 cut(s)	321, 421, 606, 892
Alw21I	GWGCWC	1 cut(s)	171
AlwI	GGATC	5 cut(s)	170, 447, 799, 830, 869
Ama87I	CYCGRG	1 cut(s)	704
AoxI	GGCC	3 cut(s)	81, 132, 156
ApeKI	GCWGC	3 cut(s)	401, 603, 611
AspLEI	GCGC	2 cut(s)	253, 899
AspS9I	GGNCC	1 cut(s)	310
AsuC2I	CCSGG	3 cut(s)	37, 98, 110
AsuHPI	GGTGA	2 cut(s)	814, 944
AvaI	CYCGRG	1 cut(s)	704
AvaII	GGWCC	1 cut(s)	310
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	2 cut(s)	93, 250
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbsI	GAAGAC	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	3 cut(s)	388, 615, 623
BccI	CCATC	4 cut(s)	543, 659, 740, 892
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	4 cut(s)	50, 546, 600, 789
BclI	TGATCA	1 cut(s)	685
BcnI	CCSGG	3 cut(s)	37, 98, 110
BfaI	CTAG	1 cut(s)	929
BfmI	CTRYAG	1 cut(s)	609
BfoI	RGCGCY	1 cut(s)	254
BglII	AGATCT	3 cut(s)	192, 616, 908
BlpI	GCTNAGC	1 cut(s)	893
Bme1390I	CCNGG	7 cut(s)	37, 50, 98, 110, 546, 600, 789
Bme18I	GGWCC	1 cut(s)	310
BmeT110I	CYCGRG	1 cut(s)	704
BmgBI	CACGTC	2 cut(s)	58, 202
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	3 cut(s)	95, 252, 279
BmrFI	CCNGG	7 cut(s)	37, 50, 98, 110, 546, 600, 789
BmrI	ACTGGG	1 cut(s)	761
BmuI	ACTGGG	1 cut(s)	761
BpiI	GAAGAC	1 cut(s)	347
Bpu1102I	GCTNAGC	1 cut(s)	893
BpuMI	CCSGG	3 cut(s)	37, 98, 110
BsaBI	GATNNNNATC	1 cut(s)	536
BsaHI	GRCGYC	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	266, 741
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	5 cut(s)	90, 124, 584, 814, 815
Bse1I	ACTGG	2 cut(s)	721, 767
Bse8I	GATNNNNATC	1 cut(s)	536
BseBI	CCWGG	4 cut(s)	50, 546, 600, 789
BseDI	CCNNGG	2 cut(s)	266, 741
BseGI	GGATG	4 cut(s)	289, 554, 670, 751
BseJI	GATNNNNATC	1 cut(s)	536
BseLI	CCNNNNNNNGG	5 cut(s)	90, 124, 584, 814, 815
BseMII	CTCAG	4 cut(s)	184, 871, 907, 908
BseNI	ACTGG	2 cut(s)	721, 767
BseRI	GAGGAG	4 cut(s)	227, 283, 385, 812
BseXI	GCAGC	3 cut(s)	388, 615, 623
Bsh1236I	CGCG	1 cut(s)	44
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	3 cut(s)	83, 134, 158
BshNI	GGYRCC	2 cut(s)	93, 250
BsiEI	CGRYCG	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	704
BsiSI	CCGG	4 cut(s)	37, 98, 110, 281
BslI	CCNNNNNNNGG	5 cut(s)	90, 124, 584, 814, 815
BsmI	GAATGC	1 cut(s)	825
BsnI	GGCC	3 cut(s)	83, 134, 158
BsoBI	CYCGRG	1 cut(s)	704
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp1720I	GCTNAGC	1 cut(s)	893
BspANI	GGCC	3 cut(s)	83, 134, 158
BspCNI	CTCAG	4 cut(s)	183, 870, 906, 909
BspFNI	CGCG	1 cut(s)	44
BspLI	GGNNCC	3 cut(s)	95, 252, 279
BspMAI	CTGCAG	1 cut(s)	613
BspPI	GGATC	5 cut(s)	170, 447, 799, 830, 869
BspQI	GCTCTTC	1 cut(s)	374
BspT107I	GGYRCC	2 cut(s)	93, 250
BsrBI	CCGCTC	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	721, 767
BssECI	CCNNGG	2 cut(s)	266, 741
BssNI	GRCGYC	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	741
Bst2UI	CCWGG	4 cut(s)	50, 546, 600, 789
Bst4CI	ACNGT	2 cut(s)	484, 514
Bst6I	CTCTTC	2 cut(s)	374, 916
BstACI	GRCGYC	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	323, 423
BstDEI	CTNAG	6 cut(s)	170, 564, 843, 857, 893, 917
BstF5I	GGATG	4 cut(s)	289, 554, 670, 751
BstFNI	CGCG	1 cut(s)	44
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	2 cut(s)	253, 899
BstMCI	CGRYCG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	2 cut(s)	259, 262
BstNI	CCWGG	4 cut(s)	50, 546, 600, 789
BstSCI	CCNGG	7 cut(s)	35, 48, 96, 108, 544, 598, 787
BstSFI	CTRYAG	1 cut(s)	609
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	3 cut(s)	388, 615, 623
BstV2I	GAAGAC	1 cut(s)	347
BstX2I	RGATCY	5 cut(s)	192, 439, 616, 835, 908
BstXI	CCANNNNNNTGG	1 cut(s)	599
BstYI	RGATCY	5 cut(s)	192, 439, 616, 835, 908
BsuRI	GGCC	3 cut(s)	83, 134, 158
BtrI	CACGTC	2 cut(s)	58, 202
BtsCI	GGATG	4 cut(s)	289, 554, 670, 751
BtsIMutI	CAGTG	2 cut(s)	178, 714
Cac8I	GCNNGC	2 cut(s)	323, 423
CfoI	GCGC	2 cut(s)	253, 899
Cfr13I	GGNCC	1 cut(s)	310
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	3 cut(s)	70, 205, 561
CviAII	CATG	2 cut(s)	85, 647
CviQI	GTAC	3 cut(s)	70, 205, 561
DdeI	CTNAG	6 cut(s)	170, 564, 843, 857, 893, 917
DinI	GGCGCC	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	374, 916
EarI	CTCTTC	2 cut(s)	374, 916
EciI	GGCGGA	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	741
Eco147I	AGGCCT	1 cut(s)	158
Eco32I	GATATC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	704
EcoRII	CCWGG	4 cut(s)	48, 544, 598, 787
EcoRV	GATATC	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	741
EgeI	GGCGCC	1 cut(s)	252
EheI	GGCGCC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	741
FaeI	CATG	2 cut(s)	88, 650
FaiI	YATR	6 cut(s)	86, 151, 648, 690, 779, 795
FatI	CATG	2 cut(s)	84, 646
FauI	CCCGC	1 cut(s)	353
FbaI	TGATCA	1 cut(s)	685
FblI	GTMKAC	1 cut(s)	114
FokI	GGATG	4 cut(s)	296, 561, 677, 758
FspBI	CTAG	1 cut(s)	929
GlaI	GCGC	2 cut(s)	252, 898
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	3 cut(s)	83, 134, 158
HapII	CCGG	4 cut(s)	37, 98, 110, 281
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	2 cut(s)	253, 899
Hin1I	GRCGYC	1 cut(s)	251
Hin1II	CATG	2 cut(s)	88, 650
Hin6I	GCGC	2 cut(s)	251, 897
HinP1I	GCGC	2 cut(s)	251, 897
HincII	GTYRAC	4 cut(s)	10, 33, 115, 696
HindII	GTYRAC	4 cut(s)	10, 33, 115, 696
HinfI	GANTC	1 cut(s)	373
HpaI	GTTAAC	1 cut(s)	696
HpaII	CCGG	4 cut(s)	37, 98, 110, 281
HphI	GGTGA	2 cut(s)	814, 944
Hpy166II	GTNNAC	6 cut(s)	10, 33, 115, 205, 634, 696
Hpy188I	TCNGA	7 cut(s)	27, 192, 277, 378, 735, 913, 918
Hpy188III	TCNNGA	6 cut(s)	477, 488, 578, 658, 772, 859
Hpy8I	GTNNAC	6 cut(s)	10, 33, 115, 205, 634, 696
Hpy99I	CGWCG	2 cut(s)	203, 632
HpyAV	CCTTC	6 cut(s)	58, 391, 453, 550, 577, 744
HpyCH4III	ACNGT	2 cut(s)	484, 514
HpyCH4IV	ACGT	3 cut(s)	57, 201, 572
HpyCH4V	TGCA	1 cut(s)	611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	259, 262
HpyF3I	CTNAG	6 cut(s)	170, 564, 843, 857, 893, 917
HpySE526I	ACGT	3 cut(s)	57, 201, 572
Hsp92I	GRCGYC	1 cut(s)	251
Hsp92II	CATG	2 cut(s)	88, 650
HspAI	GCGC	2 cut(s)	251, 897
KasI	GGCGCC	1 cut(s)	250
Ksp22I	TGATCA	1 cut(s)	685
KspAI	GTTAAC	1 cut(s)	696
LguI	GCTCTTC	1 cut(s)	374
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	3 cut(s)	388, 615, 623
MaeI	CTAG	1 cut(s)	929
MaeII	ACGT	3 cut(s)	57, 201, 572
MbiI	CCGCTC	1 cut(s)	384
MboII	GAAGA	6 cut(s)	73, 352, 391, 406, 565, 933
MflI	RGATCY	5 cut(s)	192, 439, 616, 835, 908
MhlI	GDGCHC	1 cut(s)	171
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	1 cut(s)	493
MluNI	TGGCCA	1 cut(s)	83
Mly113I	GGCGCC	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	382
MmeI	TCCRAC	1 cut(s)	255
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	4 cut(s)	294, 336, 527, 695
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	4 cut(s)	37, 98, 110, 281
MspR9I	CCNGG	7 cut(s)	37, 50, 98, 110, 546, 600, 789
Mva1269I	GAATGC	1 cut(s)	825
MvaI	CCWGG	4 cut(s)	50, 546, 600, 789
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	259, 262
NarI	GGCGCC	1 cut(s)	251
NciI	CCSGG	3 cut(s)	37, 98, 110
NlaIII	CATG	2 cut(s)	88, 650
NlaIV	GGNNCC	3 cut(s)	95, 252, 279
NmeAIII	GCCGAG	1 cut(s)	291
PaeR7I	CTCGAG	1 cut(s)	704
PceI	AGGCCT	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	374
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 633
PctI	GAATGC	1 cut(s)	825
PflMI	CCANNNNNTGG	1 cut(s)	90
PleI	GAGTC	1 cut(s)	381
PluTI	GGCGCC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	381
Psp6I	CCWGG	4 cut(s)	48, 544, 598, 787
PspGI	CCWGG	4 cut(s)	48, 544, 598, 787
PspN4I	GGNNCC	3 cut(s)	95, 252, 279
PspPI	GGNCC	1 cut(s)	310
PspXI	VCTCGAGB	1 cut(s)	704
PstI	CTGCAG	1 cut(s)	613
PsuI	RGATCY	5 cut(s)	192, 439, 616, 835, 908
RsaI	GTAC	3 cut(s)	71, 206, 562
RsaNI	GTAC	3 cut(s)	70, 205, 561
SalI	GTCGAC	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	374
SaqAI	TTAA	4 cut(s)	294, 336, 527, 695
Sau96I	GGNCC	1 cut(s)	310
SchI	GAGTC	1 cut(s)	382
ScrFI	CCNGG	7 cut(s)	37, 50, 98, 110, 546, 600, 789
SduI	GDGCHC	1 cut(s)	171
SfcI	CTRYAG	1 cut(s)	609
SfoI	GGCGCC	1 cut(s)	252
Sfr274I	CTCGAG	1 cut(s)	704
SinI	GGWCC	1 cut(s)	310
SlaI	CTCGAG	1 cut(s)	704
SmlI	CTYRAG	1 cut(s)	704
SmoI	CTYRAG	1 cut(s)	704
Sse9I	AATT	1 cut(s)	493
SseBI	AGGCCT	1 cut(s)	158
SspDI	GGCGCC	1 cut(s)	250
SspMI	CTAG	1 cut(s)	929
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	7 cut(s)	35, 48, 96, 108, 544, 598, 787
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	2 cut(s)	484, 514
TaiI	ACGT	3 cut(s)	60, 204, 575
TaqI	TCGA	4 cut(s)	114, 306, 476, 705
TasI	AATT	1 cut(s)	493
TauI	GCSGC	8 cut(s)	251, 256, 259, 262, 265, 357, 360, 407
Tru1I	TTAA	4 cut(s)	294, 336, 527, 695
Tru9I	TTAA	4 cut(s)	294, 336, 527, 695
TscAI	CASTG	2 cut(s)	178, 721
TseI	GCWGC	3 cut(s)	401, 603, 611
TspDTI	ATGAA	2 cut(s)	101, 715
TspRI	CASTG	2 cut(s)	178, 721
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	310
XhoI	CTCGAG	1 cut(s)	704
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.