AT1G10890

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007060
Physical Location & Seq
Forward (+)
3627646 .. 3630808
3163 bp
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UTR
Exon/CDS
Intron
AT1G10890.1

Sequence Viewer

Length: 867 bp
ATGCCTCGGGACTTGTCAAGATCGAGGTCACCGTCTCCATCACCTTCACGTCGTAGAAAGCACTCGAGGTCTCCCGTAAGGCAGAGGCATAGCAGGAGGAGTAGAAGAGACAGAAGCCCTTCTCCATACTCATCTCATTCGTATAGCAGGCGAAAAAGTCGTTCTATTTCTCCTAGGCGCCATCGAAGTCGATCTGTTACTCCTAAGAGACGTTCTCCAACCCCAAAACGTTACAAAAGACAAAAGAGTAGGAGTTCAACTCCATCTCCTGCAAAAAGATCTCCCGCCGCAACCCTTGAGTCAGCCAAAAATAGGAATGGAGAAAAACTTAAAAGAGAAGAGGAAGAACGAAAAAGGCGACAGCGTGAAGCAGAACTGAAGCTAATAGAGGAAGAAACTGTGAAACGGGTTGAAGAAGCTATTCGAAAGAAGGTCGAAGAAAGCTTACAGTCTGAGAAAATCAAAATGGAAATTCTAACGCTGTTGGAGGAAGGGCGAAAGAGACTTAATGAAGAAGTCGCGGCTCAACTTGAGGAGGAGAAAGAGGCTTCTCTTATTGAGGCTAAAGAAAAAGAGGGTGTTATGCGGTGTTTGTCACAGGAAAGAGAGCAACAAGAGAAAGAAGAGAGGGAGAGAATAGCAGAGGAGAACCTAAAGAGAGTGGAAGAAGCTCAGAGAAAAGAAGCAATGGAGAGGCAAAGGAAAGAGGAGGAACGGTATCGAGAGCTAGAGGAGCTGCAACGACAGAAAGAAGAAGCGATGCGAAGGAAGAAAGCTGAAGAGGAAGAAGAACGTCTCAAACAGATGAAACTGTTGGGTAAAAACAAATCACGGCCTAAATTATCCTTTGCCTTAAGCTCCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

288

Amino Acids

34.57

Weight (kDa)

10.43

Isoelectric Point (pI)

126.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARGLU PF15346 122 - 285 2e-36 Arginine and glutamate-rich 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 177
AccII CGCG 1 cut(s) 521
AciI CCGC 4 cut(s) 285, 288, 521, 586
AclI AACGTT 1 cut(s) 229
AcsI RAATTY 1 cut(s) 471
AcuI CTGAAG 2 cut(s) 398, 798
AcyI GRCGYC 1 cut(s) 178
AfiI CCNNNNNNNGG 1 cut(s) 312
AflII CTTAAG 1 cut(s) 853
AgsI TTSAA 2 cut(s) 258, 413
AjiI CACGTC 1 cut(s) 50
AluBI AGCT 8 cut(s) 382, 419, 444, 671, 727, 736, 776, 858
AluI AGCT 8 cut(s) 382, 419, 444, 671, 727, 736, 776, 858
Alw26I GTCTC 6 cut(s) 39, 75, 102, 202, 496, 800
Ama87I CYCGRG 2 cut(s) 6, 64
AoxI GGCC 1 cut(s) 833
ApeKI GCWGC 1 cut(s) 736
ApoI RAATTY 1 cut(s) 471
Asp700I GAANNNNTTC 2 cut(s) 118, 420
AspA2I CCTAGG 1 cut(s) 173
AspLEI GCGC 1 cut(s) 180
AsuHPI GGTGA 2 cut(s) 21, 33
AsuII TTCGAA 1 cut(s) 424
AvaI CYCGRG 2 cut(s) 6, 64
AvrII CCTAGG 1 cut(s) 173
BanI GGYRCC 1 cut(s) 177
BarI GAAGNNNNNNTAC 2 cut(s) 429, 461
BbvI GCAGC 1 cut(s) 723
BccI CCATC 3 cut(s) 46, 189, 271
BceAI ACGGC 1 cut(s) 848
BcoDI GTCTC 6 cut(s) 39, 75, 102, 202, 496, 800
BfaI CTAG 2 cut(s) 174, 728
BfoI RGCGCY 1 cut(s) 181
BfrI CTTAAG 1 cut(s) 853
BglII AGATCT 1 cut(s) 278
BisI GCNGC 3 cut(s) 288, 522, 737
BlnI CCTAGG 1 cut(s) 173
BlsI GCNGC 3 cut(s) 289, 523, 738
BmeT110I CYCGRG 2 cut(s) 6, 64
BmgBI CACGTC 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 179
BmsI GCATC 1 cut(s) 750
BplI GAGNNNNNCTC 4 cut(s) 199, 231, 244, 276
Bpu14I TTCGAA 1 cut(s) 424
BpuEI CTTGAG 2 cut(s) 317, 551
BsaHI GRCGYC 1 cut(s) 178
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 5, 173
BsaXI ACNNNNNCTCC 4 cut(s) 250, 280, 701, 731
Bsc4I CCNNNNNNNGG 1 cut(s) 312
Bse3DI GCAATG 1 cut(s) 693
BseDI CCNNGG 2 cut(s) 5, 173
BseLI CCNNNNNNNGG 1 cut(s) 312
BseMI GCAATG 1 cut(s) 693
BseMII CTCAG 2 cut(s) 444, 686
BseRI GAGGAG 6 cut(s) 112, 548, 551, 659, 722, 746
BseXI GCAGC 1 cut(s) 723
Bsh1236I CGCG 1 cut(s) 521
BshFI GGCC 1 cut(s) 835
BshNI GGYRCC 1 cut(s) 177
BsiHKCI CYCGRG 2 cut(s) 6, 64
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 312
BsmAI GTCTC 6 cut(s) 39, 75, 102, 202, 496, 800
BsmBI CGTCTC 3 cut(s) 39, 202, 800
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 1 cut(s) 835
Bso31I GGTCTC 1 cut(s) 75
BsoBI CYCGRG 2 cut(s) 6, 64
Bsp119I TTCGAA 1 cut(s) 424
Bsp143I GATC 3 cut(s) 20, 191, 278
BspACI CCGC 4 cut(s) 285, 288, 521, 586
BspANI GGCC 1 cut(s) 835
BspCNI CTCAG 2 cut(s) 445, 685
BspFNI CGCG 1 cut(s) 521
BspLI GGNNCC 1 cut(s) 179
BspT104I TTCGAA 1 cut(s) 424
BspT107I GGYRCC 1 cut(s) 177
BspTI CTTAAG 1 cut(s) 853
BspTNI GGTCTC 1 cut(s) 75
BsrDI GCAATG 1 cut(s) 693
BssECI CCNNGG 2 cut(s) 5, 173
BssMI GATC 3 cut(s) 20, 191, 278
BssNI GRCGYC 1 cut(s) 178
BssT1I CCWWGG 1 cut(s) 173
Bst4CI ACNGT 5 cut(s) 33, 400, 450, 717, 813
Bst6I CTCTTC 4 cut(s) 100, 333, 618, 774
BstACI GRCGYC 1 cut(s) 178
BstAFI CTTAAG 1 cut(s) 853
BstBI TTCGAA 1 cut(s) 424
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 3 cut(s) 204, 453, 672
BstEII GGTNACC 1 cut(s) 27
BstFNI CGCG 1 cut(s) 521
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 3 cut(s) 23, 194, 281
BstMAI GTCTC 6 cut(s) 39, 75, 102, 202, 496, 800
BstMBI GATC 3 cut(s) 20, 191, 278
BstMWI GCNNNNNNNGC 1 cut(s) 733
BstPI GGTNACC 1 cut(s) 27
BstUI CGCG 1 cut(s) 521
BstV1I GCAGC 1 cut(s) 723
BstX2I RGATCY 1 cut(s) 278
BstYI RGATCY 1 cut(s) 278
BsuRI GGCC 1 cut(s) 835
BtgZI GCGATG 1 cut(s) 773
BtrI CACGTC 1 cut(s) 50
Cac8I GCNNGC 1 cut(s) 149
CfoI GCGC 1 cut(s) 180
DdeI CTNAG 3 cut(s) 204, 453, 672
DinI GGCGCC 1 cut(s) 179
DpnI GATC 3 cut(s) 22, 193, 280
DpnII GATC 3 cut(s) 20, 191, 278
Eam1104I CTCTTC 4 cut(s) 100, 333, 618, 774
EarI CTCTTC 4 cut(s) 100, 333, 618, 774
Eco130I CCWWGG 1 cut(s) 173
Eco31I GGTCTC 1 cut(s) 75
Eco57I CTGAAG 2 cut(s) 398, 798
Eco88I CYCGRG 2 cut(s) 6, 64
Eco91I GGTNACC 1 cut(s) 27
EcoO65I GGTNACC 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 173
EgeI GGCGCC 1 cut(s) 179
EheI GGCGCC 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 173
Esp3I CGTCTC 3 cut(s) 39, 202, 800
FaiI YATR 4 cut(s) 90, 127, 144, 584
FaqI GGGAC 1 cut(s) 23
FauI CCCGC 1 cut(s) 292
Fnu4HI GCNGC 3 cut(s) 288, 522, 737
Fsp4HI GCNGC 3 cut(s) 288, 522, 737
FspBI CTAG 2 cut(s) 174, 728
GlaI GCGC 1 cut(s) 179
GluI GCNGC 3 cut(s) 288, 522, 737
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 1 cut(s) 835
HhaI GCGC 1 cut(s) 180
Hin1I GRCGYC 1 cut(s) 178
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 442
HinfI GANTC 1 cut(s) 299
HphI GGTGA 2 cut(s) 21, 33
Hpy188I TCNGA 2 cut(s) 454, 675
Hpy188III TCNNGA 3 cut(s) 8, 18, 722
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 5 cut(s) 54, 129, 424, 485, 759
HpyCH4III ACNGT 5 cut(s) 33, 400, 450, 717, 813
HpyCH4IV ACGT 4 cut(s) 49, 211, 229, 793
HpyCH4V TGCA 2 cut(s) 272, 739
HpyF10VI GCNNNNNNNGC 1 cut(s) 733
HpyF3I CTNAG 3 cut(s) 204, 453, 672
HpySE526I ACGT 4 cut(s) 49, 211, 229, 793
Hsp92I GRCGYC 1 cut(s) 178
HspAI GCGC 1 cut(s) 178
KasI GGCGCC 1 cut(s) 177
Kzo9I GATC 3 cut(s) 20, 191, 278
LmnI GCTCC 2 cut(s) 733, 863
LpnPI CCDG 4 cut(s) 79, 133, 282, 584
Lsp1109I GCAGC 1 cut(s) 723
LweI GCATC 1 cut(s) 750
MaeI CTAG 2 cut(s) 174, 728
MaeII ACGT 4 cut(s) 49, 211, 229, 793
MaeIII GTNAC 4 cut(s) 27, 196, 230, 594
MalI GATC 3 cut(s) 22, 193, 280
MboI GATC 3 cut(s) 20, 191, 278
MflI RGATCY 1 cut(s) 278
MluCI AATT 2 cut(s) 471, 839
Mly113I GGCGCC 1 cut(s) 178
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 2 cut(s) 242, 465
MroXI GAANNNNTTC 2 cut(s) 118, 420
MseI TTAA 3 cut(s) 330, 507, 854
MspCI CTTAAG 1 cut(s) 853
MvnI CGCG 1 cut(s) 521
MwoI GCNNNNNNNGC 1 cut(s) 733
NarI GGCGCC 1 cut(s) 178
NdeII GATC 3 cut(s) 20, 191, 278
NlaIV GGNNCC 1 cut(s) 179
NmuCI GTSAC 2 cut(s) 27, 594
NspV TTCGAA 1 cut(s) 424
PaeR7I CTCGAG 1 cut(s) 64
PcsI WCGNNNNNNNCGW 2 cut(s) 29, 355
PdmI GAANNNNTTC 2 cut(s) 118, 420
PkrI GCNGC 3 cut(s) 289, 523, 738
PleI GAGTC 1 cut(s) 307
PluTI GGCGCC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 307
Psp1406I AACGTT 1 cut(s) 229
PspEI GGTNACC 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 179
PspXI VCTCGAGB 1 cut(s) 64
PsuI RGATCY 1 cut(s) 278
SaqAI TTAA 3 cut(s) 330, 507, 854
SatI GCNGC 3 cut(s) 288, 522, 737
Sau3AI GATC 3 cut(s) 20, 191, 278
SchI GAGTC 1 cut(s) 308
SfaNI GCATC 1 cut(s) 750
SfoI GGCGCC 1 cut(s) 179
Sfr274I CTCGAG 1 cut(s) 64
SfuI TTCGAA 1 cut(s) 424
SlaI CTCGAG 1 cut(s) 64
SmlI CTYRAG 4 cut(s) 64, 296, 530, 853
SmoI CTYRAG 4 cut(s) 64, 296, 530, 853
Sse9I AATT 2 cut(s) 471, 839
SsiI CCGC 4 cut(s) 285, 288, 521, 586
SspDI GGCGCC 1 cut(s) 177
SspMI CTAG 2 cut(s) 174, 728
StyI CCWWGG 1 cut(s) 173
TaaI ACNGT 5 cut(s) 33, 400, 450, 717, 813
TaiI ACGT 4 cut(s) 52, 214, 232, 796
TaqI TCGA 7 cut(s) 23, 65, 184, 190, 424, 435, 721
TasI AATT 2 cut(s) 471, 839
TauI GCSGC 2 cut(s) 290, 524
Tru1I TTAA 3 cut(s) 330, 507, 854
Tru9I TTAA 3 cut(s) 330, 507, 854
TseFI GTSAC 2 cut(s) 27, 594
TseI GCWGC 1 cut(s) 736
Tsp45I GTSAC 2 cut(s) 27, 594
TspDTI ATGAA 2 cut(s) 525, 821
Vha464I CTTAAG 1 cut(s) 853
XapI RAATTY 1 cut(s) 471
XhoI CTCGAG 1 cut(s) 64
XmaJI CCTAGG 1 cut(s) 173
XmnI GAANNNNTTC 2 cut(s) 118, 420
XspI CTAG 2 cut(s) 174, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.